© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6189.t1 |
| Gene name | |
| Location | scaffold_16:181208..184020 |
| Strand | - |
| Gene length (bp) | 2812 |
| Transcript length (bp) | 2550 |
| Coding sequence length (bp) | 2550 |
| Protein length (aa) | 850 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03105 | SPX | SPX domain | 1.4E-11 | 1 | 43 |
| PF03105 | SPX | SPX domain | 2.6E-26 | 46 | 265 |
| PF00939 | Na_sulph_symp | Sodium:sulfate symporter transmembrane region | 1.9E-31 | 389 | 841 |
| PF03600 | CitMHS | Citrate transporter | 8.5E-18 | 422 | 616 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 382 | 404 | 22 |
| 2 | 417 | 448 | 31 |
| 3 | 468 | 490 | 22 |
| 4 | 523 | 545 | 22 |
| 5 | 560 | 582 | 22 |
| 6 | 595 | 617 | 22 |
| 7 | 637 | 656 | 19 |
| 8 | 663 | 685 | 22 |
| 9 | 695 | 717 | 22 |
| 10 | 730 | 752 | 22 |
| 11 | 778 | 800 | 22 |
| 12 | 821 | 843 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 27.15 | 16.05 | 38.24 |
| 5d_25C | Five days - 25 degrees Celsius | 21.39 | 12.40 | 30.39 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.79 | 12.00 | 29.59 |
| 10d_25C | Ten days - 25 degrees Celsius | 15.92 | 8.74 | 23.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.91 | 10.07 | 25.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.13 | 11.52 | 28.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.352919 | no |
| 3d_25C | 7d_25C | 0.282120 | no |
| 3d_25C | 7d_15C | 0.078956 | no |
| 3d_25C | 7d_30C | 0.229307 | no |
| 3d_25C | 10d_25C | 0.018295 | yes |
| 5d_25C | 7d_25C | 0.937436 | no |
| 5d_25C | 7d_15C | 0.532159 | no |
| 5d_25C | 7d_30C | 0.859314 | no |
| 5d_25C | 10d_25C | 0.250020 | no |
| 7d_25C | 7d_15C | 0.608903 | no |
| 7d_25C | 7d_30C | 0.930753 | no |
| 7d_25C | 10d_25C | 0.308059 | no |
| 7d_15C | 7d_30C | 0.709518 | no |
| 7d_15C | 10d_25C | 0.715099 | no |
| 7d_30C | 10d_25C | 0.395516 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6189.t1 MKFSHSIQFNAVPDWSSNYIAYSNLKKLIYTLEKQVNRVEGPSTTDVESAPLLGAEPSNPDAIFKRALDVEMDKI CSFYQKKEAEIFELADELIKDAGVYLSETDGVNMDPVSETIIKASSRRGNNVSAPRRRSSAVSNDSMADDEGEGG DSDDDRSPAAVSHRPRVSQSIDGESGTEDHYGDLVDSSYFGPATSREPHESYLNDEDFRALYNTGISLKKRLIEC YVSLCELRSFIELNKTGFAKALKKYDKTLDRSLRRDYLATVVHPAPPFTESTMAEIDRHIENVEGVYAGIVTKND KQSARRELRLHLREHVVWERNTVWREMIEIERRAQAANVGIRRTLLGGDDPASSRRQGDKNEIRTQEMSTPLGRF QFPLWLCSLSFGTLIFSIAIFGVMLSLNVMETPEEQNCLAMLVLVSILWATEAIPLFVTSLLIPFLVVTLGIMRS DEEPHTRLGPKESVGKVFAAMWTPVIMLLLGGFSIAAALSKYDIARRMAMFVLSKAGSKPSVMLLTNMFVSMFLS MWISNVASPVLCYSIIQPLLRNMPPESDFAKALVLGIALAANVGGAASPIASPQNIIALQNMQPNISWGTWFFIA LPVCIISILLIWVLLLVTFRPGRNSTVMPIRPVKDRWTGMQSFISIVTLLTIVLWCASHQLEHIFGDMGVIAIIP LVIFFGTGILNKEDFNNFLWTIIILAAGGLCLGKAVTSSGLLHTIAMGITARVENLSLYSVLLVFCSLILVMATF ISHTVAALIILPLVRQIGVSMENPHPNLLVMASALMCSVAMALPTSGFPNMTAIMTEVPQTGQRYLQVHHFLTRG IPASLMCFVVIVTIGYGLMYVAGL* |
| Coding | >Pro_DTO377G3_2|g6189.t1 ATGAAGTTCTCGCATAGTATTCAGTTTAATGCTGTGCCCGATTGGAGCTCGAACTACATCGCGTACAGCAATTTG AAGAAATTGATCTACACCCTCGAGAAACAGGTCAATCGCGTTGAGGGACCGTCTACCACAGATGTAGAGTCCGCT CCGCTGCTGGGCGCTGAGCCGAGCAACCCGGATGCAATCTTTAAAAGGGCTCTTGACGTTGAGATGGATAAGATC TGTTCCTTCTATCAGAAGAAGGAGGCGGAGATTTTTGAACTCGCAGATGAGCTCATAAAAGACGCTGGTGTATAT CTTTCCGAAACGGACGGTGTTAATATGGACCCCGTCAGCGAGACAATCATAAAGGCAAGCTCCCGCCGCGGCAAC AATGTCTCGGCTCCGCGCCGGCGGTCTAGTGCTGTGAGCAATGACTCGATGGCGGACGATGAAGGAGAAGGTGGT GATAGCGACGACGATCGTTCCCCGGCGGCCGTCTCACATCGCCCGAGAGTGTCGCAGTCGATCGATGGCGAGTCT GGCACGGAGGACCACTACGGTGATTTGGTAGACTCTTCCTACTTTGGACCGGCGACCAGCCGAGAACCGCACGAG TCGTACTTGAACGACGAGGATTTCCGCGCTCTTTATAATACCGGTATATCGTTAAAAAAGCGCCTGATCGAATGC TACGTCTCACTCTGCGAACTTCGCTCCTTCATCGAGCTGAACAAGACTGGCTTCGCCAAGGCCCTGAAGAAGTAT GACAAAACCTTGGACCGCAGCCTGCGCCGAGACTACCTAGCCACTGTTGTCCATCCCGCACCACCTTTCACTGAA AGTACCATGGCTGAAATCGATCGCCATATTGAGAACGTGGAGGGTGTGTACGCGGGCATCGTCACGAAGAACGAT AAACAGTCTGCTAGGCGCGAGCTGCGTCTGCATCTGCGTGAGCATGTCGTTTGGGAGCGGAACACTGTCTGGCGC GAGATGATCGAAATCGAACGACGTGCGCAGGCCGCCAATGTTGGTATTCGCCGGACCCTCCTGGGCGGCGATGAC CCGGCTAGCTCCCGGCGCCAGGGCGACAAGAACGAGATCCGCACCCAGGAGATGTCAACCCCGCTTGGTCGATTC CAGTTTCCGTTATGGCTCTGTAGCTTGAGCTTTGGTACGCTGATATTTAGTATCGCCATATTCGGCGTAATGCTT TCCTTGAACGTGATGGAAACTCCCGAGGAGCAGAACTGCTTGGCTATGCTAGTCCTCGTTAGTATCTTGTGGGCC ACTGAGGCCATTCCGCTGTTTGTCACTTCGCTTCTTATCCCATTCCTAGTCGTGACTCTAGGCATCATGCGGTCA GACGAAGAGCCGCACACGCGGCTGGGACCCAAGGAATCAGTCGGCAAGGTGTTCGCGGCGATGTGGACTCCTGTG ATTATGCTACTCCTGGGTGGTTTCTCAATCGCAGCGGCGCTGTCCAAGTACGACATCGCACGGCGCATGGCCATG TTTGTGCTAAGCAAAGCTGGATCGAAGCCATCTGTGATGTTATTGACCAACATGTTTGTGAGTATGTTCTTGAGT ATGTGGATCAGCAATGTTGCGTCCCCTGTGCTCTGCTACTCTATCATCCAGCCTTTGCTGCGCAACATGCCTCCC GAGTCGGACTTCGCCAAGGCACTCGTGCTGGGTATCGCGTTAGCCGCCAATGTCGGTGGTGCAGCGTCCCCGATT GCCTCGCCGCAGAATATCATTGCCCTGCAGAACATGCAGCCGAACATCAGCTGGGGCACATGGTTCTTCATCGCA TTGCCCGTCTGCATCATCTCCATTCTACTCATCTGGGTTCTGCTGCTGGTGACATTCCGCCCGGGCCGCAACTCA ACCGTGATGCCCATCCGCCCTGTCAAAGACCGCTGGACCGGCATGCAGTCCTTTATCAGCATCGTCACGCTCCTG ACGATCGTCCTCTGGTGCGCCAGCCACCAGCTCGAGCACATTTTCGGCGACATGGGCGTCATCGCCATCATCCCT CTCGTCATCTTCTTCGGCACCGGCATCCTCAACAAAGAGGACTTCAACAACTTCCTCTGGACGATCATAATCCTC GCCGCCGGTGGTCTGTGTCTGGGCAAGGCCGTCACTTCATCGGGCTTGCTGCACACCATCGCCATGGGTATCACC GCGCGTGTCGAGAACCTCAGCCTATACAGCGTCCTCTTAGTCTTCTGTTCTCTCATCCTTGTCATGGCCACCTTC ATCTCGCATACCGTCGCCGCCCTTATCATCCTACCGCTTGTCCGCCAGATCGGCGTTAGCATGGAAAATCCTCAC CCCAACTTGTTGGTCATGGCTAGTGCCTTGATGTGCTCTGTTGCGATGGCATTGCCCACGAGTGGATTCCCTAAT ATGACTGCTATCATGACTGAAGTACCTCAGACCGGCCAGCGATATCTCCAAGTCCACCATTTCCTGACCCGCGGC ATCCCGGCCAGTCTCATGTGCTTTGTGGTTATTGTCACAATTGGATACGGACTGATGTATGTTGCGGGTTTGTAG |
| Transcript | >Pro_DTO377G3_2|g6189.t1 ATGAAGTTCTCGCATAGTATTCAGTTTAATGCTGTGCCCGATTGGAGCTCGAACTACATCGCGTACAGCAATTTG AAGAAATTGATCTACACCCTCGAGAAACAGGTCAATCGCGTTGAGGGACCGTCTACCACAGATGTAGAGTCCGCT CCGCTGCTGGGCGCTGAGCCGAGCAACCCGGATGCAATCTTTAAAAGGGCTCTTGACGTTGAGATGGATAAGATC TGTTCCTTCTATCAGAAGAAGGAGGCGGAGATTTTTGAACTCGCAGATGAGCTCATAAAAGACGCTGGTGTATAT CTTTCCGAAACGGACGGTGTTAATATGGACCCCGTCAGCGAGACAATCATAAAGGCAAGCTCCCGCCGCGGCAAC AATGTCTCGGCTCCGCGCCGGCGGTCTAGTGCTGTGAGCAATGACTCGATGGCGGACGATGAAGGAGAAGGTGGT GATAGCGACGACGATCGTTCCCCGGCGGCCGTCTCACATCGCCCGAGAGTGTCGCAGTCGATCGATGGCGAGTCT GGCACGGAGGACCACTACGGTGATTTGGTAGACTCTTCCTACTTTGGACCGGCGACCAGCCGAGAACCGCACGAG TCGTACTTGAACGACGAGGATTTCCGCGCTCTTTATAATACCGGTATATCGTTAAAAAAGCGCCTGATCGAATGC TACGTCTCACTCTGCGAACTTCGCTCCTTCATCGAGCTGAACAAGACTGGCTTCGCCAAGGCCCTGAAGAAGTAT GACAAAACCTTGGACCGCAGCCTGCGCCGAGACTACCTAGCCACTGTTGTCCATCCCGCACCACCTTTCACTGAA AGTACCATGGCTGAAATCGATCGCCATATTGAGAACGTGGAGGGTGTGTACGCGGGCATCGTCACGAAGAACGAT AAACAGTCTGCTAGGCGCGAGCTGCGTCTGCATCTGCGTGAGCATGTCGTTTGGGAGCGGAACACTGTCTGGCGC GAGATGATCGAAATCGAACGACGTGCGCAGGCCGCCAATGTTGGTATTCGCCGGACCCTCCTGGGCGGCGATGAC CCGGCTAGCTCCCGGCGCCAGGGCGACAAGAACGAGATCCGCACCCAGGAGATGTCAACCCCGCTTGGTCGATTC CAGTTTCCGTTATGGCTCTGTAGCTTGAGCTTTGGTACGCTGATATTTAGTATCGCCATATTCGGCGTAATGCTT TCCTTGAACGTGATGGAAACTCCCGAGGAGCAGAACTGCTTGGCTATGCTAGTCCTCGTTAGTATCTTGTGGGCC ACTGAGGCCATTCCGCTGTTTGTCACTTCGCTTCTTATCCCATTCCTAGTCGTGACTCTAGGCATCATGCGGTCA GACGAAGAGCCGCACACGCGGCTGGGACCCAAGGAATCAGTCGGCAAGGTGTTCGCGGCGATGTGGACTCCTGTG ATTATGCTACTCCTGGGTGGTTTCTCAATCGCAGCGGCGCTGTCCAAGTACGACATCGCACGGCGCATGGCCATG TTTGTGCTAAGCAAAGCTGGATCGAAGCCATCTGTGATGTTATTGACCAACATGTTTGTGAGTATGTTCTTGAGT ATGTGGATCAGCAATGTTGCGTCCCCTGTGCTCTGCTACTCTATCATCCAGCCTTTGCTGCGCAACATGCCTCCC GAGTCGGACTTCGCCAAGGCACTCGTGCTGGGTATCGCGTTAGCCGCCAATGTCGGTGGTGCAGCGTCCCCGATT GCCTCGCCGCAGAATATCATTGCCCTGCAGAACATGCAGCCGAACATCAGCTGGGGCACATGGTTCTTCATCGCA TTGCCCGTCTGCATCATCTCCATTCTACTCATCTGGGTTCTGCTGCTGGTGACATTCCGCCCGGGCCGCAACTCA ACCGTGATGCCCATCCGCCCTGTCAAAGACCGCTGGACCGGCATGCAGTCCTTTATCAGCATCGTCACGCTCCTG ACGATCGTCCTCTGGTGCGCCAGCCACCAGCTCGAGCACATTTTCGGCGACATGGGCGTCATCGCCATCATCCCT CTCGTCATCTTCTTCGGCACCGGCATCCTCAACAAAGAGGACTTCAACAACTTCCTCTGGACGATCATAATCCTC GCCGCCGGTGGTCTGTGTCTGGGCAAGGCCGTCACTTCATCGGGCTTGCTGCACACCATCGCCATGGGTATCACC GCGCGTGTCGAGAACCTCAGCCTATACAGCGTCCTCTTAGTCTTCTGTTCTCTCATCCTTGTCATGGCCACCTTC ATCTCGCATACCGTCGCCGCCCTTATCATCCTACCGCTTGTCCGCCAGATCGGCGTTAGCATGGAAAATCCTCAC CCCAACTTGTTGGTCATGGCTAGTGCCTTGATGTGCTCTGTTGCGATGGCATTGCCCACGAGTGGATTCCCTAAT ATGACTGCTATCATGACTGAAGTACCTCAGACCGGCCAGCGATATCTCCAAGTCCACCATTTCCTGACCCGCGGC ATCCCGGCCAGTCTCATGTGCTTTGTGGTTATTGTCACAATTGGATACGGACTGATGTATGTTGCGGGTTTGTAG |
| Gene | >Pro_DTO377G3_2|g6189.t1 ATGAAGTTCTCGCATAGTATTCAGTTTAATGCTGTGCCCGATTGGAGCTCGAACTACATCGCGTACAGCAATTTG AAGAAATTGTAAGTTGTTGGGTTGAATATCAGGGCGTCTGTGGCTGGGATAGTGTGTACATGCAGATTCGGGAAT CTGAATTGGTGTCACATTGCACAGGATCGATGCACCGGCCCGGATGATTATTTCGATGGTGCTAACGTTGCATCG TGACTAGGATCTACACCCTCGAGAAACAGGTCAATCGCGTTGAGGGACCGTCTACCACAGATGTAGAGTCCGCTC CGCTGCTGGGCGCTGAGCCGAGCAACCCGGATGCAATCTTTAAAAGGGCTCTTGACGTTGAGATGGATAAGATCT GTTCCTTCTATCAGAAGAAGGAGGCGGAGATTTTTGAACTCGCAGATGAGCTCATAAAAGACGCTGGTGTATATC TTTCCGAAACGGACGGTGTTAATATGGACCCCGTCAGCGAGACAATCATAAAGGCAAGCTCCCGCCGCGGCAACA ATGTCTCGGCTCCGCGCCGGCGGTCTAGTGCTGTGAGCAATGACTCGATGGCGGACGATGAAGGAGAAGGTGGTG ATAGCGACGACGATCGTTCCCCGGCGGCCGTCTCACATCGCCCGAGAGTGTCGCAGTCGATCGATGGCGAGTCTG GCACGGAGGACCACTACGGTGATTTGGTAGACTCTTCCTACTTTGGACCGGCGACCAGCCGAGAACCGCACGAGT CGTACTTGAACGACGAGGATTTCCGCGCTCTTTATAATACCGGTATATCGTTAAAAAAGCGCCTGATCGAATGCT ACGTCTCACTCTGCGAACTTCGCTCCTTCATCGAGCTGAACAAGACTGGCTTCGCCAAGGCCCTGAAGAAGTATG ACAAAACCTTGGACCGCAGCCTGCGCCGAGACTACCTAGCCACTGTTGTCCATCCCGCACCACCTTTCACTGAAA GTACCATGGCTGAAATCGATCGCCATATTGAGAACGTGGAGGGTGTGTACGCGGGCATCGTCACGAAGAACGATA AACAGTCTGCTAGGCGCGAGCTGCGTCTGCATCTGCGTGAGCATGTCGTTTGGGAGCGGAACACTGTCTGGCGCG AGATGATCGAAATCGAACGACGTGCGCAGGCCGCCAATGTTGGTATTCGCCGGACCCTCCTGGGCGGCGATGACC CGGCTAGCTCCCGGCGCCAGGGCGACAAGAACGAGATCCGCACCCAGGAGATGTCAACCCCGCTTGGTCGATTCC AGTTTCCGTTATGGCTCTGTAGCTTGAGCTTTGGTACGCTGATATTTAGTATCGCCATATTCGGCGTAATGCTTT CCTTGAACGTGATGGAAACTCCCGAGGAGCAGAACTGCTTGGCTATGCTAGTCCTCGTTAGTATCTTGTGGGCCA CTGAGGTATGGGTTACTGTTTGTTTATTGACTCACATTGAATGCTAACGTTGAGTGATAGGCCATTCCGCTGTTT GTCACTTCGCTTCTTATCCCATTCCTAGTCGTGACTCTAGGCATCATGCGGTCAGACGAAGAGCCGCACACGCGG CTGGGACCCAAGGAATCAGTCGGCAAGGTGTTCGCGGCGATGTGGACTCCTGTGATTATGCTACTCCTGGGTGGT TTCTCAATCGCAGCGGCGCTGTCCAAGTACGACATCGCACGGCGCATGGCCATGTTTGTGCTAAGCAAAGCTGGA TCGAAGCCATCTGTGATGTTATTGACCAACATGTTTGTGAGTATGTTCTTGAGTATGTGGATCAGCAATGTTGCG TCCCCTGTGCTCTGCTACTCTATCATCCAGCCTTTGCTGCGCAACATGCCTCCCGAGTCGGACTTCGCCAAGGCA CTCGTGCTGGGTATCGCGTTAGCCGCCAATGTCGGTGGTGCAGCGTCCCCGATTGCCTCGCCGCAGAATATCATT GCCCTGCAGAACATGCAGCCGAACATCAGCTGGGGCACATGGTTCTTCATCGCATTGCCCGTCTGCATCATCTCC ATTCTACTCATCTGGGTTCTGCTGCTGGTGACATTCCGCCCGGGCCGCAACTCAACCGTGATGCCCATCCGCCCT GTCAAAGACCGCTGGACCGGCATGCAGTCCTTTATCAGCATCGTCACGCTCCTGACGATCGTCCTCTGGTGCGCC AGCCACCAGCTCGAGCACATTTTCGGCGACATGGGCGTCATCGCCATCATCCCTCTCGTCATCTTCTTCGGCACC GGCATCCTCAACAAAGAGGACTTCAACAACTTCCTCTGGACGATCATAATCCTCGCCGCCGGTGGTCTGTGTCTG GGCAAGGCCGTCACTTCATCGGGCTTGCTGCACACCATCGCCATGGGTATCACCGCGCGTGTCGAGAACCTCAGC CTATACAGCGTCCTCTTAGTCTTCTGTTCTCTCATCCTTGTCATGGCCACCTTCATCTCGCATACCGTCGCCGCC CTTATCATCCTACCGCTTGTCCGCCAGATCGGCGTTAGCATGGAAAATCCTCACCCCAACTTGTTGGTCATGGCT AGTGCCTTGATGTGCTCTGTTGCGATGGCATTGCCCACGAGTGGATTCCCTAATATGAGTATGTCCTTCCTTCAG TTCACTTGTATCGAGCTCTCTTGCTAACTTGTTTCTCCTAGCTGCTATCATGACTGAAGTACCTCAGACCGGCCA GCGATATCTCCAAGTCCACCATTTCCTGACCCGCGGCATCCCGGCCAGTCTCATGTGCTTTGTGGTTATTGTCAC AATTGGATACGGACTGATGTATGTTGCGGGTTTGTAG |