© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6179.t1 |
| Gene name | |
| Location | scaffold_16:158060..160393 |
| Strand | - |
| Gene length (bp) | 2333 |
| Transcript length (bp) | 2223 |
| Coding sequence length (bp) | 2223 |
| Protein length (aa) | 741 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-17 | 47 | 116 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.8E-17 | 135 | 202 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.2E-19 | 228 | 296 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.7E-08 | 331 | 368 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.7E-06 | 424 | 460 |
| PF00658 | PABP | Poly-adenylate binding protein, unique domain | 1.3E-28 | 645 | 709 |
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.7E-03 | 32 | 123 |
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.4E-02 | 133 | 214 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 73.14 | 44.89 | 101.40 |
| 5d_25C | Five days - 25 degrees Celsius | 80.67 | 49.16 | 112.18 |
| 7d_25C | Seven days - 25 degrees Celsius | 101.26 | 61.55 | 140.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 101.74 | 60.66 | 142.83 |
| 7d_15C | Seven days - 15 degrees Celsius | 95.35 | 58.25 | 132.45 |
| 7d_30C | Seven days - 30 degrees Celsius | 93.25 | 56.87 | 129.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.731631 | no |
| 3d_25C | 7d_25C | 0.132943 | no |
| 3d_25C | 7d_15C | 0.241077 | no |
| 3d_25C | 7d_30C | 0.289651 | no |
| 3d_25C | 10d_25C | 0.134450 | no |
| 5d_25C | 7d_25C | 0.341928 | no |
| 5d_25C | 7d_15C | 0.513810 | no |
| 5d_25C | 7d_30C | 0.582790 | no |
| 5d_25C | 10d_25C | 0.343855 | no |
| 7d_25C | 7d_15C | 0.847375 | no |
| 7d_25C | 7d_30C | 0.778570 | no |
| 7d_25C | 10d_25C | 0.990082 | no |
| 7d_15C | 7d_30C | 0.948504 | no |
| 7d_15C | 10d_25C | 0.844652 | no |
| 7d_30C | 10d_25C | 0.775534 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6179.t1 MSAEAPATAPVTDNVVAATPEANGAPVEATSEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALH DTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF TNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKDVKTQKLYVGR AQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRDAAERSPSPEAEE KEADKETKDSEEKEVKTEESTEAKTEEPTEEKKTEEEGEDTEEKKTEKKAFGKSKGFGFVCFSSPDEASKAVTEM NQRMVNAKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYGAGQQGFMPPGQRGGMPF APQGGMPMPNMPAGRPQYPGPFPQGGRGMPPNQQLPPNFQGMPMGMQAPGGIPNGMGYPMPQAFGRGGGGRGVPG MPMNMRGGPGFGRGGPQMGRGGGRGQPAPGGQPAGGEPASANQALLTAPPAQQKQMLGEALYPKIQAQQPELAGK ITGMLLEMDNAELLGLLDDEEALRGKVDEALNVYDEYMKNKGDGETTEPKPQEAAKEAPVEENKS* |
| Coding | >Pro_DTO377G3_2|g6179.t1 ATGTCTGCTGAAGCCCCCGCCACCGCTCCTGTCACTGACAACGTTGTCGCCGCTACCCCTGAGGCCAATGGCGCC CCCGTCGAGGCCACTTCCGAGGCCGCCGGTGATGCTGCCAACAACCAGCCCCACTCGGCTTCCCTCTACGTCGGC GAGCTTGACCCCTCCGTGACTGAGGCTATGCTCTACGAGCTATTCTCTTCCATCGGCCAGGTCGCCTCTATCCGT GTCTGCCGTGATGCCGTCACCCGCCGGTCCTTGGGCTACGCCTACGTCAACTACAACAACACCGCTGACGGCGAG CGTGCTCTTGAGGATCTGAACTACACTCTCATCAAGGGAAAGCCTTGCCGCATCATGTGGTCCCAGCGTGACCCC GCTCTGCGCAAGACTGGCCAGGGCAACGTGTTCATCAAGAACCTTGACAACGCCATTGACAACAAGGCTCTCCAC GACACCTTCGCTGCCTTCGGCAACATTCTCAGCTGCAAGGTCGCCCAGGATGAGTTCGCCAACTCCAAGGGCTAC GGTTTCGTCCACTACGAGACCGCCGAAGCCGCCAACAACGCCATCAAGCACGTTAACGGTATGCTGCTGAATGAC AAGAAGGTCTTCGTCGGACACCACATCTCCAAGAAGGACCGCCAAAGCAAGTTCGAGGAGATGAAGGCCAACTTC ACCAACATCTACATCAAGAACATCGATCTCGAGATTACCGACGACGAGTTCCGCGTCATGTTCGAGGCCTTTGGT GAGATCACCTCCGCCACCCTCAGCCACGACCAGGATGGCAAGAGCCGCGGTTTCGGCTTTGTTAACTACGCCAAC CACGAGAGCGCCGAGGCCGCTGTGGCTGAGATGAACGAGAAGGACGTCAAGACTCAGAAGCTTTACGTTGGCCGT GCCCAGAAGAAGCACGAGCGTGAGGAGGAGCTGCGCAAGCAGTACGAGGCTGCCCGCATGGAGAAGGCCTCCAAG TACCAGGGTGTCAACCTCTACGTTAAGAACTTGACCGACGACATTGATGATGAGAAGCTCCGTGACCTCTTCACT CCTTACGGTACTATCACTTCCGCCAAGGTTATGCGTGATGCCGCCGAACGTTCTCCCTCCCCCGAGGCCGAGGAG AAGGAGGCCGACAAGGAGACCAAGGACTCCGAGGAGAAGGAGGTGAAGACCGAGGAGAGCACCGAGGCGAAGACT GAGGAGCCTACCGAGGAGAAGAAGACCGAGGAGGAGGGCGAGGACACCGAGGAGAAGAAGACAGAGAAGAAGGCC TTCGGTAAGAGCAAGGGCTTCGGTTTCGTCTGCTTCAGCAGCCCCGATGAGGCTTCCAAGGCTGTCACCGAGATG AACCAGCGTATGGTCAACGCCAAGCCCCTCTACGTTGCTCTCGCTCAGCGCAAGGATGTCCGCCGCAGCCAGCTC GAGGCTAGCATCCAGGCTCGCAACACTATCCGCCAGCAGCAGGCCGCAGCCGCTGCCGGTATGCCCCAGCCTTTC ATGCAGCCCGCCGTCTTCTACGGTGCTGGCCAGCAGGGCTTCATGCCCCCTGGACAGCGTGGTGGTATGCCATTC GCCCCCCAGGGCGGTATGCCCATGCCTAACATGCCCGCTGGACGTCCCCAGTACCCCGGTCCCTTCCCCCAAGGT GGTCGTGGTATGCCCCCCAACCAACAGCTTCCTCCCAACTTCCAGGGTATGCCTATGGGCATGCAGGCCCCTGGT GGCATTCCTAACGGCATGGGCTACCCTATGCCCCAGGCTTTCGGACGTGGCGGCGGTGGCCGTGGTGTTCCCGGT ATGCCCATGAACATGCGTGGTGGCCCCGGTTTCGGCCGTGGTGGTCCTCAGATGGGTCGTGGTGGTGGTCGCGGC CAGCCCGCCCCTGGTGGTCAGCCCGCTGGTGGCGAGCCCGCCTCTGCCAACCAGGCTCTTCTCACCGCTCCCCCC GCTCAGCAGAAGCAGATGCTCGGCGAGGCTCTTTACCCCAAGATCCAGGCTCAGCAGCCCGAGCTTGCTGGCAAG ATCACTGGTATGCTTCTTGAGATGGATAACGCTGAGTTGCTTGGCCTGCTCGATGATGAGGAGGCTCTCCGCGGC AAGGTCGATGAGGCCCTTAACGTCTATGATGAGTACATGAAGAACAAGGGTGATGGCGAGACCACCGAACCCAAG CCCCAGGAAGCCGCCAAGGAGGCCCCTGTTGAGGAGAACAAGTCTTAA |
| Transcript | >Pro_DTO377G3_2|g6179.t1 ATGTCTGCTGAAGCCCCCGCCACCGCTCCTGTCACTGACAACGTTGTCGCCGCTACCCCTGAGGCCAATGGCGCC CCCGTCGAGGCCACTTCCGAGGCCGCCGGTGATGCTGCCAACAACCAGCCCCACTCGGCTTCCCTCTACGTCGGC GAGCTTGACCCCTCCGTGACTGAGGCTATGCTCTACGAGCTATTCTCTTCCATCGGCCAGGTCGCCTCTATCCGT GTCTGCCGTGATGCCGTCACCCGCCGGTCCTTGGGCTACGCCTACGTCAACTACAACAACACCGCTGACGGCGAG CGTGCTCTTGAGGATCTGAACTACACTCTCATCAAGGGAAAGCCTTGCCGCATCATGTGGTCCCAGCGTGACCCC GCTCTGCGCAAGACTGGCCAGGGCAACGTGTTCATCAAGAACCTTGACAACGCCATTGACAACAAGGCTCTCCAC GACACCTTCGCTGCCTTCGGCAACATTCTCAGCTGCAAGGTCGCCCAGGATGAGTTCGCCAACTCCAAGGGCTAC GGTTTCGTCCACTACGAGACCGCCGAAGCCGCCAACAACGCCATCAAGCACGTTAACGGTATGCTGCTGAATGAC AAGAAGGTCTTCGTCGGACACCACATCTCCAAGAAGGACCGCCAAAGCAAGTTCGAGGAGATGAAGGCCAACTTC ACCAACATCTACATCAAGAACATCGATCTCGAGATTACCGACGACGAGTTCCGCGTCATGTTCGAGGCCTTTGGT GAGATCACCTCCGCCACCCTCAGCCACGACCAGGATGGCAAGAGCCGCGGTTTCGGCTTTGTTAACTACGCCAAC CACGAGAGCGCCGAGGCCGCTGTGGCTGAGATGAACGAGAAGGACGTCAAGACTCAGAAGCTTTACGTTGGCCGT GCCCAGAAGAAGCACGAGCGTGAGGAGGAGCTGCGCAAGCAGTACGAGGCTGCCCGCATGGAGAAGGCCTCCAAG TACCAGGGTGTCAACCTCTACGTTAAGAACTTGACCGACGACATTGATGATGAGAAGCTCCGTGACCTCTTCACT CCTTACGGTACTATCACTTCCGCCAAGGTTATGCGTGATGCCGCCGAACGTTCTCCCTCCCCCGAGGCCGAGGAG AAGGAGGCCGACAAGGAGACCAAGGACTCCGAGGAGAAGGAGGTGAAGACCGAGGAGAGCACCGAGGCGAAGACT GAGGAGCCTACCGAGGAGAAGAAGACCGAGGAGGAGGGCGAGGACACCGAGGAGAAGAAGACAGAGAAGAAGGCC TTCGGTAAGAGCAAGGGCTTCGGTTTCGTCTGCTTCAGCAGCCCCGATGAGGCTTCCAAGGCTGTCACCGAGATG AACCAGCGTATGGTCAACGCCAAGCCCCTCTACGTTGCTCTCGCTCAGCGCAAGGATGTCCGCCGCAGCCAGCTC GAGGCTAGCATCCAGGCTCGCAACACTATCCGCCAGCAGCAGGCCGCAGCCGCTGCCGGTATGCCCCAGCCTTTC ATGCAGCCCGCCGTCTTCTACGGTGCTGGCCAGCAGGGCTTCATGCCCCCTGGACAGCGTGGTGGTATGCCATTC GCCCCCCAGGGCGGTATGCCCATGCCTAACATGCCCGCTGGACGTCCCCAGTACCCCGGTCCCTTCCCCCAAGGT GGTCGTGGTATGCCCCCCAACCAACAGCTTCCTCCCAACTTCCAGGGTATGCCTATGGGCATGCAGGCCCCTGGT GGCATTCCTAACGGCATGGGCTACCCTATGCCCCAGGCTTTCGGACGTGGCGGCGGTGGCCGTGGTGTTCCCGGT ATGCCCATGAACATGCGTGGTGGCCCCGGTTTCGGCCGTGGTGGTCCTCAGATGGGTCGTGGTGGTGGTCGCGGC CAGCCCGCCCCTGGTGGTCAGCCCGCTGGTGGCGAGCCCGCCTCTGCCAACCAGGCTCTTCTCACCGCTCCCCCC GCTCAGCAGAAGCAGATGCTCGGCGAGGCTCTTTACCCCAAGATCCAGGCTCAGCAGCCCGAGCTTGCTGGCAAG ATCACTGGTATGCTTCTTGAGATGGATAACGCTGAGTTGCTTGGCCTGCTCGATGATGAGGAGGCTCTCCGCGGC AAGGTCGATGAGGCCCTTAACGTCTATGATGAGTACATGAAGAACAAGGGTGATGGCGAGACCACCGAACCCAAG CCCCAGGAAGCCGCCAAGGAGGCCCCTGTTGAGGAGAACAAGTCTTAA |
| Gene | >Pro_DTO377G3_2|g6179.t1 ATGTCTGCTGAAGCCCCCGCCACCGCTCCTGTCACTGACAACGTTGTCGCCGCTACCCCTGAGGCCAATGGCGCC CCCGTCGAGGCCACTTCCGAGGCCGCCGGTGATGCTGCCAACAACCAGCCCCACTCGGCTTCCCTCTACGTCGGC GAGCTTGACCCCTCCGTGACTGAGGCTATGCTCTACGAGCTATTCTCTTCCATCGGCCAGGTCGCCTCTATCCGT GTCTGCCGTGATGCCGTCACCCGCCGGTCCTTGGGCTACGCCTACGTCAACTACAACAACACCGCTGACGGCGAG CGTGCTCTTGAGGATCTGAACTACACTCTCATCAAGGGAAAGCCTTGCCGCATCATGTGGTCCCAGCGTGACCCC GCTCTGCGCAAGACTGGCCAGGGCAACGTGTTCATCAAGAACCTTGACAACGCCATTGACAACAAGGCTCTCCAC GACACCTTCGCTGCCTTCGGCAACATTCTCAGCTGCAAGGTCGCCCAGGATGAGTTCGCCAACTCCAAGGGCTAC GGTTTCGTCCACTACGAGACCGCCGAAGCCGCCAACAACGCCATCAAGCACGTTAACGGTATGCTGCTGAATGAC AAGAAGGTCTTCGTCGGACACCACATCTCCAAGAAGGACCGCCAAAGCAAGTTCGAGGAGATGAAGGCCAACTTC ACCAACATCTACATCAAGAACATCGATCTCGAGATTACCGACGACGAGTTCCGCGTCATGTTCGAGGCCTTTGGT GAGATCACCTCCGCCACCCTCAGCCACGACCAGGATGGCAAGAGCCGCGGTTTCGGCTTTGTTAACTACGCCAAC CACGAGAGCGCCGAGGCCGCTGTGGCTGAGATGAACGAGAAGGACGTCAAGACTCAGAAGCTTTACGTTGGCCGT GCCCAGAAGAAGCACGAGCGTGAGGAGGAGCTGCGCAAGCAGTACGAGGCTGCCCGCATGGAGAAGGCCTCCAAG TACCAGGGTGTCAACCTCTACGTTAAGAACTTGACCGACGACATTGATGATGAGAAGCTCCGTGACCTCTTCACT CCTTACGGTACTATCACTTCCGCCAAGGTTATGCGTGATGCCGCCGAACGTTCTCCCTCCCCCGAGGCCGAGGAG AAGGAGGCCGACAAGGAGACCAAGGACTCCGAGGAGAAGGAGGTGAAGACCGAGGAGAGCACCGAGGCGAAGACT GAGGAGCCTACCGAGGAGAAGAAGACCGAGGAGGAGGGCGAGGACACCGAGGAGAAGAAGACAGAGAAGAAGGCC TTCGGTAAGAGCAAGGGCTTCGGTTTCGTCTGCTTCAGCAGCCCCGATGAGGCTTCCAAGGCTGTCACCGAGATG AACCAGCGTATGGTCAACGCCAAGCCCCTCTACGTTGCTCTCGCTCAGCGCAAGGATGTCCGCCGCAGCCAGCTC GAGGCTAGCATCCAGGCTCGCAACACTATCCGCCAGCAGCAGGCCGCAGCCGCTGCCGGTATGCCCCAGCCTGTA AGTTGCAACTTTCCTGTTCAGCCCGCTCAATTACTAACTTGACTAGTTCATGCAGCCCGCCGTCTTCTACGGTGC TGGCCAGCAGGGCTTCATGCCCCCTGGACAGCGTGGTGGTATGCCATTCGCCCCCCAGGGCGGTATGCCCATGCC TAACATGCCCGCTGGACGTCCCCAGTACCCCGGTCCCTTCCCCCAAGGTGGTCGTGGTATGCCCCCCAACCAACA GCTTCCTCCCAACTTCCAGGGTATGCCTATGGGCATGCAGGCCCCTGGTGGCATTCCTAACGGCATGGGCTACCC TATGCCCCAGGCTTTCGGACGTGGCGGCGGTGGCCGTGGTGTTCCCGGTATGCCCATGAACATGCGTGGTGGCCC CGGTTTCGGCCGTGGTGGTCCTCAGATGGGTCGTGGTGGTGGTCGCGGCCAGCCCGCCCCTGGTGGTCAGCCCGC TGGTGGCGAGCCCGCCTCTGCCAACCAGGCTCTTCTCACCGCTCCCCCCGCTCAGCAGAAGCAGATGCTCGGCGA GGCTCTTTACCCCAAGATCCAGGCTCAGCAGCCCGAGCTTGCTGGCAAGATCACTGGTATGCTTCTTGAGATGGA TAACGCTGAGTTGCTTGGCCTGTAAGTTACACTGCCCATTTTTTTGAGTTATGTGTGACAAGATTTACTAACATT CTTCCAGGCTCGATGATGAGGAGGCTCTCCGCGGCAAGGTCGATGAGGCCCTTAACGTCTATGATGAGTACATGA AGAACAAGGGTGATGGCGAGACCACCGAACCCAAGCCCCAGGAAGCCGCCAAGGAGGCCCCTGTTGAGGAGAACA AGTCTTAA |