Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g6148.t1
Gene name
Location	scaffold_16:86590..88622
Strand	-
Gene length (bp)	2032
Transcript length (bp)	1674
Coding sequence length (bp)	1674
Protein length (aa)	558

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00152	tRNA-synt_2	tRNA synthetases class II (D, K and N)	1.5E-64	200	543
PF01336	tRNA_anti-codon	OB-fold nucleic acid binding domain	1.0E-10	103	182

GO

GO Term	Description	Terminal node
GO:0005524	ATP binding	Yes
GO:0004812	aminoacyl-tRNA ligase activity	Yes
GO:0000166	nucleotide binding	Yes
GO:0006418	tRNA aminoacylation for protein translation	Yes
GO:0003676	nucleic acid binding	Yes
GO:0043039	tRNA aminoacylation	No
GO:0005488	binding	No
GO:0016875	ligase activity, forming carbon-oxygen bonds	No
GO:0006520	cellular amino acid metabolic process	No
GO:0008152	metabolic process	No
GO:0006399	tRNA metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0030554	adenyl nucleotide binding	No
GO:0006082	organic acid metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:0036094	small molecule binding	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0097367	carbohydrate derivative binding	No
GO:0017076	purine nucleotide binding	No
GO:0008150	biological_process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0043167	ion binding	No
GO:0019752	carboxylic acid metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0032559	adenyl ribonucleotide binding	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0003824	catalytic activity	No
GO:0043038	amino acid activation	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0044238	primary metabolic process	No
GO:0034660	ncRNA metabolic process	No
GO:0009987	cellular process	No
GO:1901564	organonitrogen compound metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0043168	anion binding	No
GO:1901363	heterocyclic compound binding	No
GO:0140101	catalytic activity, acting on a tRNA	No
GO:0043436	oxoacid metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0140098	catalytic activity, acting on RNA	No
GO:0032555	purine ribonucleotide binding	No
GO:0032553	ribonucleotide binding	No
GO:0097159	organic cyclic compound binding	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016874	ligase activity	No
GO:0006807	nitrogen compound metabolic process	No
GO:0044281	small molecule metabolic process	No
GO:0003674	molecular_function	No
GO:0046483	heterocycle metabolic process	No
GO:1901265	nucleoside phosphate binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	36.40	21.21	51.59
5d_25C	Five days - 25 degrees Celsius	33.43	19.31	47.55
7d_25C	Seven days - 25 degrees Celsius	26.09	14.38	37.80
10d_25C	Ten days - 25 degrees Celsius	20.79	10.93	30.64
7d_15C	Seven days - 15 degrees Celsius	35.11	20.33	49.89
7d_30C	Seven days - 30 degrees Celsius	30.74	17.53	43.95

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.790214	no
3d_25C	7d_25C	0.181805	no
3d_25C	7d_15C	0.918684	no
3d_25C	7d_30C	0.555886	no
3d_25C	10d_25C	0.017762	yes
5d_25C	7d_25C	0.355827	no
5d_25C	7d_15C	0.886579	no
5d_25C	7d_30C	0.798956	no
5d_25C	10d_25C	0.047696	yes
7d_25C	7d_15C	0.244828	no
7d_25C	7d_30C	0.589614	no
7d_25C	10d_25C	0.442064	no
7d_15C	7d_30C	0.661355	no
7d_15C	10d_25C	0.028409	yes
7d_30C	10d_25C	0.129118	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g6148.t1 MLSIRPRWALSGFGLRNSAGLRLARQSRIQTFFTSRLTTQPIRKHSSAVLPGKKALQDRVQQIKDACADPYPRLA VDTRTLSCAEFRSRYAELADNDSVEDTVIVSGRIRTYRLAGSKLIFFDIVQDGHKVQVMCNKRRLENVSPEDFKK FYRLLRRGDAFSVTGRPHRTGRGELTIDVSELPQLLSPCLHDVPIHDIEHETSPYPRHVQFLANPATADIIRARA ALVQYLRQFFIDRSFMEVSTPIIGSVAGGAIARPFYTSATEFPDRQLSLRIAPELWLKRLVVGGFDKIFEIGPSF RNEGLDKTHNAEFTTCEFYHAYANLENLMAMTEDLLSGMAAHIRALNTTGTLNPTTADFTAPFRRIDFLIGIEEG TGHKLPDLESPDALDKVYAIFTKLSLPLPTNPTLPRLLDELCSIYVESQCINPTFIINPPECLSPLSKSFVHPTT KQRVAARGELFIEGKEVVNTYEEENSPFEQRRKFEDQLRFSKAADEPGEVDESYLEALEWGLPPTGGWGCGVDRL CMLFTGAKRITDVLPFGNLRAVTRRHGQSGSE*
Coding	>Pro_DTO377G3_2\|g6148.t1 ATGCTTTCAATTCGCCCTAGATGGGCTTTATCTGGCTTTGGCCTACGAAACAGTGCAGGACTGCGACTCGCTAGA CAATCCCGCATTCAGACTTTCTTTACATCACGACTAACCACACAGCCAATTCGAAAGCATAGCTCTGCAGTATTA CCAGGAAAGAAGGCTTTACAGGATCGCGTACAGCAGATCAAAGATGCCTGCGCAGACCCATACCCTCGCCTAGCG GTGGACACACGCACACTGAGCTGCGCCGAATTTCGCTCTCGCTACGCCGAGCTCGCCGACAATGATTCAGTAGAA GACACAGTCATCGTCTCTGGAAGAATCCGTACCTATAGACTCGCCGGAAGCAAATTGATCTTCTTCGATATCGTG CAGGACGGCCATAAAGTCCAGGTGATGTGCAACAAGCGTCGTCTGGAGAATGTCTCTCCCGAGGACTTCAAGAAG TTCTATCGTCTTCTGCGTCGCGGCGACGCTTTCTCTGTAACCGGTAGACCGCACCGCACTGGACGAGGCGAGCTC ACCATCGATGTGAGCGAGTTGCCGCAACTGCTCTCGCCGTGTCTGCATGATGTCCCCATTCACGACATTGAGCAC GAGACCTCTCCCTACCCTCGCCATGTCCAGTTCCTAGCCAACCCCGCGACAGCCGATATCATCCGAGCCCGCGCG GCCCTGGTACAGTATCTACGCCAGTTCTTTATCGACCGATCCTTTATGGAGGTTAGTACCCCGATCATCGGGTCT GTGGCAGGCGGCGCAATTGCTCGTCCGTTCTATACCTCTGCCACCGAGTTCCCAGACCGCCAGCTGTCGCTGAGA ATCGCACCGGAGCTATGGCTCAAGCGGTTGGTGGTTGGTGGGTTTGACAAGATCTTCGAAATTGGACCTTCGTTC CGCAATGAGGGATTGGACAAAACACACAACGCAGAATTCACCACCTGTGAATTCTACCATGCATACGCCAATCTC GAGAATCTAATGGCCATGACCGAAGACCTCCTCTCCGGAATGGCAGCCCACATCCGCGCCTTAAACACAACAGGC ACTCTTAACCCCACCACAGCCGACTTCACGGCACCATTCCGCCGTATCGACTTCCTTATAGGCATCGAAGAGGGC ACTGGTCACAAACTGCCTGACCTTGAATCCCCCGACGCCCTAGACAAAGTATACGCTATCTTCACCAAGCTCTCC CTCCCACTCCCAACGAACCCAACCCTCCCGCGACTCCTTGACGAACTATGCAGCATCTACGTCGAATCACAGTGC ATCAACCCAACCTTCATCATCAACCCACCCGAATGCCTCTCCCCACTCTCTAAATCCTTCGTTCACCCGACGACC AAGCAGCGCGTCGCCGCACGCGGTGAACTCTTTATCGAGGGCAAGGAAGTGGTGAATACATACGAGGAGGAGAAC TCTCCGTTTGAGCAGCGCCGCAAATTCGAGGACCAGCTACGATTTAGCAAGGCTGCTGATGAACCTGGCGAGGTA GATGAGAGCTACCTCGAAGCCCTGGAGTGGGGTTTGCCTCCTACCGGTGGATGGGGTTGTGGGGTTGATCGTCTC TGTATGCTTTTCACGGGGGCCAAGCGAATTACCGATGTGTTGCCATTTGGTAATCTACGGGCTGTGACTAGACGA CATGGACAGTCGGGTAGCGAGTGA
Transcript	>Pro_DTO377G3_2\|g6148.t1 ATGCTTTCAATTCGCCCTAGATGGGCTTTATCTGGCTTTGGCCTACGAAACAGTGCAGGACTGCGACTCGCTAGA CAATCCCGCATTCAGACTTTCTTTACATCACGACTAACCACACAGCCAATTCGAAAGCATAGCTCTGCAGTATTA CCAGGAAAGAAGGCTTTACAGGATCGCGTACAGCAGATCAAAGATGCCTGCGCAGACCCATACCCTCGCCTAGCG GTGGACACACGCACACTGAGCTGCGCCGAATTTCGCTCTCGCTACGCCGAGCTCGCCGACAATGATTCAGTAGAA GACACAGTCATCGTCTCTGGAAGAATCCGTACCTATAGACTCGCCGGAAGCAAATTGATCTTCTTCGATATCGTG CAGGACGGCCATAAAGTCCAGGTGATGTGCAACAAGCGTCGTCTGGAGAATGTCTCTCCCGAGGACTTCAAGAAG TTCTATCGTCTTCTGCGTCGCGGCGACGCTTTCTCTGTAACCGGTAGACCGCACCGCACTGGACGAGGCGAGCTC ACCATCGATGTGAGCGAGTTGCCGCAACTGCTCTCGCCGTGTCTGCATGATGTCCCCATTCACGACATTGAGCAC GAGACCTCTCCCTACCCTCGCCATGTCCAGTTCCTAGCCAACCCCGCGACAGCCGATATCATCCGAGCCCGCGCG GCCCTGGTACAGTATCTACGCCAGTTCTTTATCGACCGATCCTTTATGGAGGTTAGTACCCCGATCATCGGGTCT GTGGCAGGCGGCGCAATTGCTCGTCCGTTCTATACCTCTGCCACCGAGTTCCCAGACCGCCAGCTGTCGCTGAGA ATCGCACCGGAGCTATGGCTCAAGCGGTTGGTGGTTGGTGGGTTTGACAAGATCTTCGAAATTGGACCTTCGTTC CGCAATGAGGGATTGGACAAAACACACAACGCAGAATTCACCACCTGTGAATTCTACCATGCATACGCCAATCTC GAGAATCTAATGGCCATGACCGAAGACCTCCTCTCCGGAATGGCAGCCCACATCCGCGCCTTAAACACAACAGGC ACTCTTAACCCCACCACAGCCGACTTCACGGCACCATTCCGCCGTATCGACTTCCTTATAGGCATCGAAGAGGGC ACTGGTCACAAACTGCCTGACCTTGAATCCCCCGACGCCCTAGACAAAGTATACGCTATCTTCACCAAGCTCTCC CTCCCACTCCCAACGAACCCAACCCTCCCGCGACTCCTTGACGAACTATGCAGCATCTACGTCGAATCACAGTGC ATCAACCCAACCTTCATCATCAACCCACCCGAATGCCTCTCCCCACTCTCTAAATCCTTCGTTCACCCGACGACC AAGCAGCGCGTCGCCGCACGCGGTGAACTCTTTATCGAGGGCAAGGAAGTGGTGAATACATACGAGGAGGAGAAC TCTCCGTTTGAGCAGCGCCGCAAATTCGAGGACCAGCTACGATTTAGCAAGGCTGCTGATGAACCTGGCGAGGTA GATGAGAGCTACCTCGAAGCCCTGGAGTGGGGTTTGCCTCCTACCGGTGGATGGGGTTGTGGGGTTGATCGTCTC TGTATGCTTTTCACGGGGGCCAAGCGAATTACCGATGTGTTGCCATTTGGTAATCTACGGGCTGTGACTAGACGA CATGGACAGTCGGGTAGCGAGTGA
Gene	>Pro_DTO377G3_2\|g6148.t1 ATGCTTTCAATTCGCCCTAGATGGGCTTTATCTGGCTTTGGCCTACGAAACAGGTAAGACTTGCATTTACTGTTT ATCGCTTTACTCCCTCAATTCCCACTCGCCCCTTATATGATGATTTATCCCCGCATTAGAACCGCTACAGTGATG TCCTTTTGGACACTGAACGTACTGGATTTTATCTGACAAAGCTTAATGCTTTAATTTGGATCAACAATGTCAATT TTCTCGAACATTGCTAACCCAAATCTTTAGTGCAGGACTGCGACTCGCTAGACAATCCCGCATTCAGACTTTCTT TACATCACGACTAACCACACAGCCAATTCGAAAGCATAGCTCTGCAGTATTACCAGGAAAGAAGGCTTTACAGGA TCGCGTACAGCAGATCAAAGATGCCTGCGCAGACCCATACCCTCGCCTAGCGGTGGACACACGCACACTGAGCTG CGCCGAATTTCGCTCTCGCTACGCCGAGCTCGCCGACAATGATTCAGTAGAAGACACAGTCATCGTCTCTGGTAG GTTCTGCTTTCTGGCCTTTACAATGCCCATGTACTTAGAATAGTAGGAAGAATCCGTACCTATAGACTCGCCGGA AGCAAATTGATCTTCTTCGATATCGTGCAGGACGGCCATAAAGTCCAGGTGATGTGCAACAAGCGTCGTCTGGAG AATGTCTCTCCCGAGGACTTCAAGAAGTTCTATCGTCTTCTGCGTCGCGGCGACGCTTTCTGTATGTCTCGTCTC CGTCCGGCCTGACTCGAGTGTCGCTAAATGCCATTCTAGCTGTAACCGGTAGACCGCACCGCACTGGACGAGGCG AGCTCACCATCGATGTGAGCGAGTTGCCGCAACTGCTCTCGCCGTGTCTGCATGATGTCCCCATTCACGACATTG AGCACGAGACCTCTCCCTACCCTCGCCATGTCCAGTTCCTAGCCAACCCCGCGACAGCCGATATCATCCGAGCCC GCGCGGCCCTGGTACAGTATCTACGCCAGTTCTTTATCGACCGATCCTTTATGGAGGTTAGTACCCCGATCATCG GGTCTGTGGCAGGCGGCGCAATTGCTCGTCCGTTCTATACCTCTGCCACCGAGTTCCCAGACCGCCAGCTGTCGC TGAGAATCGCACCGGAGCTATGGCTCAAGCGGTTGGTGGTTGGTGGGTTTGACAAGATCTTCGAAATTGGACCTT CGTTCCGCAATGAGGGTGTGTTGAAACAGATATCCAAATGCCTGTCTAACAAAGCTGATGAGATATAGGATTGGA CAAAACACACAACGCAGAATTCACCACCTGTGAATTCTACCATGCATACGCCAATCTCGAGAATCTAATGGCCAT GACCGAAGACCTCCTCTCCGGAATGGCAGCCCACATCCGCGCCTTAAACACAACAGGCACTCTTAACCCCACCAC AGCCGACTTCACGGCACCATTCCGCCGTATCGACTTCCTTATAGGCATCGAAGAGGGCACTGGTCACAAACTGCC TGACCTTGAATCCCCCGACGCCCTAGACAAAGTATACGCTATCTTCACCAAGCTCTCCCTCCCACTCCCAACGAA CCCAACCCTCCCGCGACTCCTTGACGAACTATGCAGCATCTACGTCGAATCACAGTGCATCAACCCAACCTTCAT CATCAACCCACCCGAATGCCTCTCCCCACTCTCTAAATCCTTCGTTCACCCGACGACCAAGCAGCGCGTCGCCGC ACGCGGTGAACTCTTTATCGAGGGCAAGGAAGTGGTGAATACATACGAGGAGGAGAACTCTCCGTTTGAGCAGCG CCGCAAATTCGAGGACCAGCTACGATTTAGCAAGGCTGCTGATGAACCTGGCGAGGTAGATGAGAGCTACCTCGA AGCCCTGGAGTGGGGTTTGCCTCCTACCGGTGGATGGGGTTGTGGGGTTGATCGTCTCTGTATGCTTTTCACGGG GGCCAAGCGAATTACCGATGTGTTGCCATTTGGTAATCTACGGGCTGTGACTAGACGACATGGACAGTCGGGTAG CGAGTGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences