Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6148.t1
Gene name
Locationscaffold_16:86590..88622
Strand-
Gene length (bp)2032
Transcript length (bp)1674
Coding sequence length (bp)1674
Protein length (aa) 558

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00152 tRNA-synt_2 tRNA synthetases class II (D, K and N) 1.5E-64 200 543
PF01336 tRNA_anti-codon OB-fold nucleic acid binding domain 1.0E-10 103 182

GO

GO Term Description Terminal node
GO:0005524 ATP binding Yes
GO:0004812 aminoacyl-tRNA ligase activity Yes
GO:0000166 nucleotide binding Yes
GO:0006418 tRNA aminoacylation for protein translation Yes
GO:0003676 nucleic acid binding Yes
GO:0043039 tRNA aminoacylation No
GO:0005488 binding No
GO:0016875 ligase activity, forming carbon-oxygen bonds No
GO:0006520 cellular amino acid metabolic process No
GO:0008152 metabolic process No
GO:0006399 tRNA metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0030554 adenyl nucleotide binding No
GO:0006082 organic acid metabolic process No
GO:0071704 organic substance metabolic process No
GO:0036094 small molecule binding No
GO:1901360 organic cyclic compound metabolic process No
GO:0097367 carbohydrate derivative binding No
GO:0017076 purine nucleotide binding No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0043167 ion binding No
GO:0019752 carboxylic acid metabolic process No
GO:0016070 RNA metabolic process No
GO:0032559 adenyl ribonucleotide binding No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0003824 catalytic activity No
GO:0043038 amino acid activation No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0044238 primary metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0009987 cellular process No
GO:1901564 organonitrogen compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0043168 anion binding No
GO:1901363 heterocyclic compound binding No
GO:0140101 catalytic activity, acting on a tRNA No
GO:0043436 oxoacid metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0140098 catalytic activity, acting on RNA No
GO:0032555 purine ribonucleotide binding No
GO:0032553 ribonucleotide binding No
GO:0097159 organic cyclic compound binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0016874 ligase activity No
GO:0006807 nitrogen compound metabolic process No
GO:0044281 small molecule metabolic process No
GO:0003674 molecular_function No
GO:0046483 heterocycle metabolic process No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6148.t1
MLSIRPRWALSGFGLRNSAGLRLARQSRIQTFFTSRLTTQPIRKHSSAVLPGKKALQDRVQQIKDACADPYPRLA
VDTRTLSCAEFRSRYAELADNDSVEDTVIVSGRIRTYRLAGSKLIFFDIVQDGHKVQVMCNKRRLENVSPEDFKK
FYRLLRRGDAFSVTGRPHRTGRGELTIDVSELPQLLSPCLHDVPIHDIEHETSPYPRHVQFLANPATADIIRARA
ALVQYLRQFFIDRSFMEVSTPIIGSVAGGAIARPFYTSATEFPDRQLSLRIAPELWLKRLVVGGFDKIFEIGPSF
RNEGLDKTHNAEFTTCEFYHAYANLENLMAMTEDLLSGMAAHIRALNTTGTLNPTTADFTAPFRRIDFLIGIEEG
TGHKLPDLESPDALDKVYAIFTKLSLPLPTNPTLPRLLDELCSIYVESQCINPTFIINPPECLSPLSKSFVHPTT
KQRVAARGELFIEGKEVVNTYEEENSPFEQRRKFEDQLRFSKAADEPGEVDESYLEALEWGLPPTGGWGCGVDRL
CMLFTGAKRITDVLPFGNLRAVTRRHGQSGSE*
Coding >Pro_DTO377G3_2|g6148.t1
ATGCTTTCAATTCGCCCTAGATGGGCTTTATCTGGCTTTGGCCTACGAAACAGTGCAGGACTGCGACTCGCTAGA
CAATCCCGCATTCAGACTTTCTTTACATCACGACTAACCACACAGCCAATTCGAAAGCATAGCTCTGCAGTATTA
CCAGGAAAGAAGGCTTTACAGGATCGCGTACAGCAGATCAAAGATGCCTGCGCAGACCCATACCCTCGCCTAGCG
GTGGACACACGCACACTGAGCTGCGCCGAATTTCGCTCTCGCTACGCCGAGCTCGCCGACAATGATTCAGTAGAA
GACACAGTCATCGTCTCTGGAAGAATCCGTACCTATAGACTCGCCGGAAGCAAATTGATCTTCTTCGATATCGTG
CAGGACGGCCATAAAGTCCAGGTGATGTGCAACAAGCGTCGTCTGGAGAATGTCTCTCCCGAGGACTTCAAGAAG
TTCTATCGTCTTCTGCGTCGCGGCGACGCTTTCTCTGTAACCGGTAGACCGCACCGCACTGGACGAGGCGAGCTC
ACCATCGATGTGAGCGAGTTGCCGCAACTGCTCTCGCCGTGTCTGCATGATGTCCCCATTCACGACATTGAGCAC
GAGACCTCTCCCTACCCTCGCCATGTCCAGTTCCTAGCCAACCCCGCGACAGCCGATATCATCCGAGCCCGCGCG
GCCCTGGTACAGTATCTACGCCAGTTCTTTATCGACCGATCCTTTATGGAGGTTAGTACCCCGATCATCGGGTCT
GTGGCAGGCGGCGCAATTGCTCGTCCGTTCTATACCTCTGCCACCGAGTTCCCAGACCGCCAGCTGTCGCTGAGA
ATCGCACCGGAGCTATGGCTCAAGCGGTTGGTGGTTGGTGGGTTTGACAAGATCTTCGAAATTGGACCTTCGTTC
CGCAATGAGGGATTGGACAAAACACACAACGCAGAATTCACCACCTGTGAATTCTACCATGCATACGCCAATCTC
GAGAATCTAATGGCCATGACCGAAGACCTCCTCTCCGGAATGGCAGCCCACATCCGCGCCTTAAACACAACAGGC
ACTCTTAACCCCACCACAGCCGACTTCACGGCACCATTCCGCCGTATCGACTTCCTTATAGGCATCGAAGAGGGC
ACTGGTCACAAACTGCCTGACCTTGAATCCCCCGACGCCCTAGACAAAGTATACGCTATCTTCACCAAGCTCTCC
CTCCCACTCCCAACGAACCCAACCCTCCCGCGACTCCTTGACGAACTATGCAGCATCTACGTCGAATCACAGTGC
ATCAACCCAACCTTCATCATCAACCCACCCGAATGCCTCTCCCCACTCTCTAAATCCTTCGTTCACCCGACGACC
AAGCAGCGCGTCGCCGCACGCGGTGAACTCTTTATCGAGGGCAAGGAAGTGGTGAATACATACGAGGAGGAGAAC
TCTCCGTTTGAGCAGCGCCGCAAATTCGAGGACCAGCTACGATTTAGCAAGGCTGCTGATGAACCTGGCGAGGTA
GATGAGAGCTACCTCGAAGCCCTGGAGTGGGGTTTGCCTCCTACCGGTGGATGGGGTTGTGGGGTTGATCGTCTC
TGTATGCTTTTCACGGGGGCCAAGCGAATTACCGATGTGTTGCCATTTGGTAATCTACGGGCTGTGACTAGACGA
CATGGACAGTCGGGTAGCGAGTGA
Transcript >Pro_DTO377G3_2|g6148.t1
ATGCTTTCAATTCGCCCTAGATGGGCTTTATCTGGCTTTGGCCTACGAAACAGTGCAGGACTGCGACTCGCTAGA
CAATCCCGCATTCAGACTTTCTTTACATCACGACTAACCACACAGCCAATTCGAAAGCATAGCTCTGCAGTATTA
CCAGGAAAGAAGGCTTTACAGGATCGCGTACAGCAGATCAAAGATGCCTGCGCAGACCCATACCCTCGCCTAGCG
GTGGACACACGCACACTGAGCTGCGCCGAATTTCGCTCTCGCTACGCCGAGCTCGCCGACAATGATTCAGTAGAA
GACACAGTCATCGTCTCTGGAAGAATCCGTACCTATAGACTCGCCGGAAGCAAATTGATCTTCTTCGATATCGTG
CAGGACGGCCATAAAGTCCAGGTGATGTGCAACAAGCGTCGTCTGGAGAATGTCTCTCCCGAGGACTTCAAGAAG
TTCTATCGTCTTCTGCGTCGCGGCGACGCTTTCTCTGTAACCGGTAGACCGCACCGCACTGGACGAGGCGAGCTC
ACCATCGATGTGAGCGAGTTGCCGCAACTGCTCTCGCCGTGTCTGCATGATGTCCCCATTCACGACATTGAGCAC
GAGACCTCTCCCTACCCTCGCCATGTCCAGTTCCTAGCCAACCCCGCGACAGCCGATATCATCCGAGCCCGCGCG
GCCCTGGTACAGTATCTACGCCAGTTCTTTATCGACCGATCCTTTATGGAGGTTAGTACCCCGATCATCGGGTCT
GTGGCAGGCGGCGCAATTGCTCGTCCGTTCTATACCTCTGCCACCGAGTTCCCAGACCGCCAGCTGTCGCTGAGA
ATCGCACCGGAGCTATGGCTCAAGCGGTTGGTGGTTGGTGGGTTTGACAAGATCTTCGAAATTGGACCTTCGTTC
CGCAATGAGGGATTGGACAAAACACACAACGCAGAATTCACCACCTGTGAATTCTACCATGCATACGCCAATCTC
GAGAATCTAATGGCCATGACCGAAGACCTCCTCTCCGGAATGGCAGCCCACATCCGCGCCTTAAACACAACAGGC
ACTCTTAACCCCACCACAGCCGACTTCACGGCACCATTCCGCCGTATCGACTTCCTTATAGGCATCGAAGAGGGC
ACTGGTCACAAACTGCCTGACCTTGAATCCCCCGACGCCCTAGACAAAGTATACGCTATCTTCACCAAGCTCTCC
CTCCCACTCCCAACGAACCCAACCCTCCCGCGACTCCTTGACGAACTATGCAGCATCTACGTCGAATCACAGTGC
ATCAACCCAACCTTCATCATCAACCCACCCGAATGCCTCTCCCCACTCTCTAAATCCTTCGTTCACCCGACGACC
AAGCAGCGCGTCGCCGCACGCGGTGAACTCTTTATCGAGGGCAAGGAAGTGGTGAATACATACGAGGAGGAGAAC
TCTCCGTTTGAGCAGCGCCGCAAATTCGAGGACCAGCTACGATTTAGCAAGGCTGCTGATGAACCTGGCGAGGTA
GATGAGAGCTACCTCGAAGCCCTGGAGTGGGGTTTGCCTCCTACCGGTGGATGGGGTTGTGGGGTTGATCGTCTC
TGTATGCTTTTCACGGGGGCCAAGCGAATTACCGATGTGTTGCCATTTGGTAATCTACGGGCTGTGACTAGACGA
CATGGACAGTCGGGTAGCGAGTGA
Gene >Pro_DTO377G3_2|g6148.t1
ATGCTTTCAATTCGCCCTAGATGGGCTTTATCTGGCTTTGGCCTACGAAACAGGTAAGACTTGCATTTACTGTTT
ATCGCTTTACTCCCTCAATTCCCACTCGCCCCTTATATGATGATTTATCCCCGCATTAGAACCGCTACAGTGATG
TCCTTTTGGACACTGAACGTACTGGATTTTATCTGACAAAGCTTAATGCTTTAATTTGGATCAACAATGTCAATT
TTCTCGAACATTGCTAACCCAAATCTTTAGTGCAGGACTGCGACTCGCTAGACAATCCCGCATTCAGACTTTCTT
TACATCACGACTAACCACACAGCCAATTCGAAAGCATAGCTCTGCAGTATTACCAGGAAAGAAGGCTTTACAGGA
TCGCGTACAGCAGATCAAAGATGCCTGCGCAGACCCATACCCTCGCCTAGCGGTGGACACACGCACACTGAGCTG
CGCCGAATTTCGCTCTCGCTACGCCGAGCTCGCCGACAATGATTCAGTAGAAGACACAGTCATCGTCTCTGGTAG
GTTCTGCTTTCTGGCCTTTACAATGCCCATGTACTTAGAATAGTAGGAAGAATCCGTACCTATAGACTCGCCGGA
AGCAAATTGATCTTCTTCGATATCGTGCAGGACGGCCATAAAGTCCAGGTGATGTGCAACAAGCGTCGTCTGGAG
AATGTCTCTCCCGAGGACTTCAAGAAGTTCTATCGTCTTCTGCGTCGCGGCGACGCTTTCTGTATGTCTCGTCTC
CGTCCGGCCTGACTCGAGTGTCGCTAAATGCCATTCTAGCTGTAACCGGTAGACCGCACCGCACTGGACGAGGCG
AGCTCACCATCGATGTGAGCGAGTTGCCGCAACTGCTCTCGCCGTGTCTGCATGATGTCCCCATTCACGACATTG
AGCACGAGACCTCTCCCTACCCTCGCCATGTCCAGTTCCTAGCCAACCCCGCGACAGCCGATATCATCCGAGCCC
GCGCGGCCCTGGTACAGTATCTACGCCAGTTCTTTATCGACCGATCCTTTATGGAGGTTAGTACCCCGATCATCG
GGTCTGTGGCAGGCGGCGCAATTGCTCGTCCGTTCTATACCTCTGCCACCGAGTTCCCAGACCGCCAGCTGTCGC
TGAGAATCGCACCGGAGCTATGGCTCAAGCGGTTGGTGGTTGGTGGGTTTGACAAGATCTTCGAAATTGGACCTT
CGTTCCGCAATGAGGGTGTGTTGAAACAGATATCCAAATGCCTGTCTAACAAAGCTGATGAGATATAGGATTGGA
CAAAACACACAACGCAGAATTCACCACCTGTGAATTCTACCATGCATACGCCAATCTCGAGAATCTAATGGCCAT
GACCGAAGACCTCCTCTCCGGAATGGCAGCCCACATCCGCGCCTTAAACACAACAGGCACTCTTAACCCCACCAC
AGCCGACTTCACGGCACCATTCCGCCGTATCGACTTCCTTATAGGCATCGAAGAGGGCACTGGTCACAAACTGCC
TGACCTTGAATCCCCCGACGCCCTAGACAAAGTATACGCTATCTTCACCAAGCTCTCCCTCCCACTCCCAACGAA
CCCAACCCTCCCGCGACTCCTTGACGAACTATGCAGCATCTACGTCGAATCACAGTGCATCAACCCAACCTTCAT
CATCAACCCACCCGAATGCCTCTCCCCACTCTCTAAATCCTTCGTTCACCCGACGACCAAGCAGCGCGTCGCCGC
ACGCGGTGAACTCTTTATCGAGGGCAAGGAAGTGGTGAATACATACGAGGAGGAGAACTCTCCGTTTGAGCAGCG
CCGCAAATTCGAGGACCAGCTACGATTTAGCAAGGCTGCTGATGAACCTGGCGAGGTAGATGAGAGCTACCTCGA
AGCCCTGGAGTGGGGTTTGCCTCCTACCGGTGGATGGGGTTGTGGGGTTGATCGTCTCTGTATGCTTTTCACGGG
GGCCAAGCGAATTACCGATGTGTTGCCATTTGGTAATCTACGGGCTGTGACTAGACGACATGGACAGTCGGGTAG
CGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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