© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6146.t1 |
| Gene name | |
| Location | scaffold_16:83431..84374 |
| Strand | - |
| Gene length (bp) | 943 |
| Transcript length (bp) | 834 |
| Coding sequence length (bp) | 834 |
| Protein length (aa) | 278 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 1.7E-84 | 43 | 260 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 94 | 116 | 22 |
| 3 | 131 | 150 | 19 |
| 4 | 162 | 184 | 22 |
| 5 | 188 | 210 | 22 |
| 6 | 223 | 245 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 35.32 | 17.14 | 53.50 |
| 5d_25C | Five days - 25 degrees Celsius | 14.72 | 5.53 | 23.91 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.63 | 3.43 | 17.83 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.07 | 6.23 | 25.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 50.06 | 26.44 | 73.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 95.40 | 50.28 | 140.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.002761 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.238068 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.005626 | yes |
| 5d_25C | 7d_25C | 0.428447 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.858676 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.287882 | no |
| 7d_15C | 7d_30C | 0.009124 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6146.t1 MSHEEDISAKDTNNYSSSNDDYETGHFGPLAHVNTASSRYPAFGGDLQPGLYRIPKDRKLANPAPLGLCAFALTT FVLGCLNMNVRGITAPNIIVGPALIYGGFVQLLAGMWEMAIGNTFGATVLSSYGAFWMSLAITFIPGGFDIIGAL EEADNGSPAMFYNSFALYLFGWFIFTTMITMLTLKSTLAFFSLFFFVDIAILLLSLGYLFNVDGAPNEKLIKAGG LFALLGAFLAWYNAFAGIADNSNSFILPPVIHFPWSEKKRIARRNSAGQSEV* |
| Coding | >Pro_DTO377G3_2|g6146.t1 ATGTCCCACGAAGAAGATATCAGTGCCAAAGATACAAACAACTATTCCTCCAGCAATGACGACTATGAAACAGGC CACTTTGGCCCCCTAGCCCACGTCAACACAGCCTCGAGCCGTTACCCTGCCTTCGGAGGTGATCTCCAGCCAGGT CTATACCGCATCCCCAAAGACCGCAAGCTCGCCAATCCGGCACCACTAGGCCTGTGCGCATTCGCACTCACCACC TTTGTGCTGGGATGTCTCAATATGAACGTCAGGGGCATTACTGCGCCTAATATCATCGTTGGGCCTGCATTGATT TATGGCGGCTTTGTGCAGCTTTTGGCTGGCATGTGGGAAATGGCGATTGGCAATACCTTTGGTGCCACTGTGCTC TCATCTTACGGTGCTTTCTGGATGTCGCTTGCTATTACTTTTATCCCCGGTGGATTTGATATCATAGGGGCCCTT GAAGAAGCGGATAATGGGTCTCCCGCTATGTTTTACAATTCGTTTGCATTGTATCTCTTCGGCTGGTTCATCTTC ACAACAATGATCACTATGCTCACTCTCAAATCCACCTTGGCATTCTTCTCCCTCTTTTTCTTCGTCGACATCGCC ATTCTCTTGCTCTCCCTCGGGTACCTTTTCAATGTGGATGGTGCGCCAAATGAGAAATTGATAAAGGCGGGTGGG CTCTTTGCTCTGCTTGGTGCTTTCTTAGCTTGGTATAATGCCTTTGCTGGTATTGCTGATAACAGTAACAGCTTC ATTCTGCCTCCTGTTATTCACTTCCCCTGGTCTGAGAAGAAACGTATCGCTAGGCGGAATTCTGCTGGACAGAGT GAGGTTTAA |
| Transcript | >Pro_DTO377G3_2|g6146.t1 ATGTCCCACGAAGAAGATATCAGTGCCAAAGATACAAACAACTATTCCTCCAGCAATGACGACTATGAAACAGGC CACTTTGGCCCCCTAGCCCACGTCAACACAGCCTCGAGCCGTTACCCTGCCTTCGGAGGTGATCTCCAGCCAGGT CTATACCGCATCCCCAAAGACCGCAAGCTCGCCAATCCGGCACCACTAGGCCTGTGCGCATTCGCACTCACCACC TTTGTGCTGGGATGTCTCAATATGAACGTCAGGGGCATTACTGCGCCTAATATCATCGTTGGGCCTGCATTGATT TATGGCGGCTTTGTGCAGCTTTTGGCTGGCATGTGGGAAATGGCGATTGGCAATACCTTTGGTGCCACTGTGCTC TCATCTTACGGTGCTTTCTGGATGTCGCTTGCTATTACTTTTATCCCCGGTGGATTTGATATCATAGGGGCCCTT GAAGAAGCGGATAATGGGTCTCCCGCTATGTTTTACAATTCGTTTGCATTGTATCTCTTCGGCTGGTTCATCTTC ACAACAATGATCACTATGCTCACTCTCAAATCCACCTTGGCATTCTTCTCCCTCTTTTTCTTCGTCGACATCGCC ATTCTCTTGCTCTCCCTCGGGTACCTTTTCAATGTGGATGGTGCGCCAAATGAGAAATTGATAAAGGCGGGTGGG CTCTTTGCTCTGCTTGGTGCTTTCTTAGCTTGGTATAATGCCTTTGCTGGTATTGCTGATAACAGTAACAGCTTC ATTCTGCCTCCTGTTATTCACTTCCCCTGGTCTGAGAAGAAACGTATCGCTAGGCGGAATTCTGCTGGACAGAGT GAGGTTTAA |
| Gene | >Pro_DTO377G3_2|g6146.t1 ATGTCCCACGAAGAAGATATCAGTGCCAAAGATACAAACAACTATTCCTCCAGCAATGACGACTATGAAACAGGC CACTTTGGCCCCCTAGCCCACGTCAACACAGCCTCGAGCCGTTACCCTGCCTTCGGAGGTGATCTCCAGCCAGGT CTATACCGCATCCCCAAAGACCGCAAGCTCGCCAATCCGGCACCACTAGGCCTGTGCGCATTCGCACTCACCACC TTTGTGCTGGGATGTCTCAATATGAACGTCAGGGGCATTACTGCGCCTAATATCATCGTTGGGCCTGCATTGATT TATGGCGGCTTTGTGCAGCTTTTGGCTGGCATGTGGTATGTTTCAGACATGTTATGGACATGAATACTCGGGCTT TAGCTAACAAAACCAGGGAAATGGCGATTGGCAATACCTTTGGTGCCACTGTGCTCTCATCTTACGGTGCTTTCT GGATGTCGCTTGCTATTACTTTTATCCCCGGTGGATTTGATATCATAGGGGCCCTTGAAGAAGCGGATAATGGGT CTCCCGCTATGTTTTACAATTCGTTTGCATTGTATCTCTTCGTATGTTATTCCGGGCAAGAAGAAGGAGATTGGA ACTAACTTACTCTCAATAGGGCTGGTTCATCTTCACAACAATGATCACTATGCTCACTCTCAAATCCACCTTGGC ATTCTTCTCCCTCTTTTTCTTCGTCGACATCGCCATTCTCTTGCTCTCCCTCGGGTACCTTTTCAATGTGGATGG TGCGCCAAATGAGAAATTGATAAAGGCGGGTGGGCTCTTTGCTCTGCTTGGTGCTTTCTTAGCTTGGTATAATGC CTTTGCTGGTATTGCTGATAACAGTAACAGCTTCATTCTGCCTCCTGTTATTCACTTCCCCTGGTCTGAGAAGAA ACGTATCGCTAGGCGGAATTCTGCTGGACAGAGTGAGGTTTAA |