© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g6145.t1 |
| Gene name | |
| Location | scaffold_16:80730..83113 |
| Strand | + |
| Gene length (bp) | 2383 |
| Transcript length (bp) | 2058 |
| Coding sequence length (bp) | 2058 |
| Protein length (aa) | 686 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10383 | Clr2 | Transcription-silencing protein Clr2 | 2.0E-31 | 365 | 512 |
| PF16761 | Clr2_transil | Transcription-silencing protein, cryptic loci regulator Clr2 | 1.9E-14 | 65 | 125 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 20.32 | 11.29 | 29.35 |
| 5d_25C | Five days - 25 degrees Celsius | 27.68 | 16.14 | 39.21 |
| 7d_25C | Seven days - 25 degrees Celsius | 29.44 | 17.32 | 41.56 |
| 10d_25C | Ten days - 25 degrees Celsius | 30.13 | 17.71 | 42.55 |
| 7d_15C | Seven days - 15 degrees Celsius | 21.89 | 12.32 | 31.47 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.82 | 16.15 | 39.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.210562 | no |
| 3d_25C | 7d_25C | 0.108699 | no |
| 3d_25C | 7d_15C | 0.829400 | no |
| 3d_25C | 7d_30C | 0.194103 | no |
| 3d_25C | 10d_25C | 0.087584 | no |
| 5d_25C | 7d_25C | 0.861105 | no |
| 5d_25C | 7d_15C | 0.384112 | no |
| 5d_25C | 7d_30C | 0.989656 | no |
| 5d_25C | 10d_25C | 0.794886 | no |
| 7d_25C | 7d_15C | 0.232845 | no |
| 7d_25C | 7d_30C | 0.865063 | no |
| 7d_25C | 10d_25C | 0.949031 | no |
| 7d_15C | 7d_30C | 0.361683 | no |
| 7d_15C | 10d_25C | 0.197302 | no |
| 7d_30C | 10d_25C | 0.806053 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6145.t1 MSYSSEDEDSNVNIIPMENFPSDGDMSTWPSSHYIERSDLRWRQLLAENWLKDMGTYEDGVIHTIEKLPDGYCLF ERPRGTNPSMFDSFLFGHPSGRYFQSQLSFLPHFLSLVKNELDKCQCKPCGKMKMSEGTAVQGKAGQRTRRVVQP IIDERRPTDAEGPDYWRILIMKLKDKGALDEDIEQRFNFDWVLTHEWLSDYFMKLVLDPAYIPRRGELVLWIWQG LEDGCLMRNPETGFIEIFGNDNKWHGVPNWRAGVVTQIPEDEGHMVNIIEGSDNPRGLSYSGFRLETLPDPVGSD KSYSVQYAYVPLRNIKPFNTWQLYLNGQERGDIHPSIENAMTVMSSWSMVHKFHVIGTWPSARIYCKGIFVGAEL LALHDTVRLRPHGFHHDQLKYGTVGEVTDVMVIEKIALYLSECIDDNEEQLAKHFTALISGKVFTTDPSRVTQEG PFQGRNPVSSGGSATGPIPLTTEEAIATFRQVGMGDYGPWYRMADGRTCNVSPHLIVGRCYEPLAAELMFGTHTM SYDLSGVMEGRQYSSQVDSRMPEGKTWFWGDCRVETLGLTEINGVECGLTAAQRENPRKWQAIIKISHGEVGHDL RGQAELPSSVGRPSKSSSSAPKGTSSRPRTGLEHIAQTSKLVSSVIGSVPDTEEDSFDDQVYGGISELGIGVGHS SGEDSDYSNE* |
| Coding | >Pro_DTO377G3_2|g6145.t1 ATGTCTTACAGCAGCGAGGATGAGGACTCCAATGTTAATATTATCCCCATGGAGAATTTTCCCAGCGATGGAGAC ATGAGTACATGGCCCTCAAGTCACTACATTGAACGCTCCGACTTGCGCTGGCGGCAGTTACTTGCTGAAAACTGG CTCAAAGATATGGGCACTTATGAAGATGGTGTCATTCATACCATTGAGAAGTTGCCTGATGGATACTGTCTATTT GAGCGACCTCGTGGGACTAATCCTAGCATGTTTGATTCTTTTCTTTTTGGTCATCCAAGCGGTCGGTATTTTCAA TCACAGTTATCTTTCTTGCCACATTTCCTCTCTCTGGTCAAGAACGAGCTTGACAAGTGCCAATGCAAGCCCTGT GGTAAAATGAAGATGAGCGAAGGGACTGCAGTGCAAGGGAAGGCGGGACAGAGGACTAGACGCGTTGTACAACCA ATCATTGATGAGCGCCGACCCACCGATGCAGAGGGACCAGATTACTGGCGAATCTTGATTATGAAATTGAAAGAT AAGGGGGCCCTCGACGAAGATATTGAGCAGCGGTTCAATTTTGACTGGGTATTGACTCACGAATGGCTTTCTGAT TACTTTATGAAACTGGTTCTGGATCCCGCTTACATCCCCCGTCGTGGTGAGCTTGTTCTCTGGATCTGGCAGGGT CTCGAAGACGGCTGCTTGATGCGCAACCCTGAGACTGGCTTCATTGAGATATTTGGCAACGATAATAAGTGGCAT GGTGTGCCCAATTGGCGTGCCGGCGTGGTGACCCAAATCCCAGAGGACGAAGGGCATATGGTAAATATCATTGAA GGCTCCGATAATCCACGCGGGCTGAGCTACTCTGGATTCCGTTTGGAGACTCTGCCAGATCCGGTGGGTAGTGAT AAGTCTTACTCGGTGCAATATGCCTATGTTCCGTTGCGTAACATCAAGCCTTTTAACACATGGCAACTCTACCTC AATGGCCAAGAGCGAGGGGATATTCACCCATCTATTGAGAATGCCATGACTGTTATGTCTTCGTGGAGCATGGTT CACAAATTCCATGTTATTGGCACATGGCCCAGCGCCAGGATCTACTGCAAGGGAATCTTCGTCGGGGCCGAACTC CTTGCCTTACACGACACCGTCCGTCTGAGGCCACATGGATTCCATCACGACCAGCTCAAGTACGGAACAGTCGGC GAAGTGACAGACGTGATGGTTATTGAAAAAATCGCGCTCTATCTTTCAGAGTGCATCGACGACAACGAGGAGCAG CTAGCCAAACACTTCACAGCCCTGATATCCGGTAAGGTGTTCACCACTGATCCTAGTCGCGTTACCCAAGAAGGC CCATTCCAAGGCAGAAACCCAGTGTCATCCGGCGGATCAGCAACTGGTCCTATCCCACTCACTACGGAAGAAGCA ATCGCTACCTTCCGCCAGGTCGGCATGGGCGACTACGGTCCCTGGTACCGTATGGCCGATGGTAGAACCTGCAAC GTCTCCCCACACCTTATCGTGGGTCGCTGCTACGAACCGCTCGCGGCAGAGCTTATGTTCGGCACCCATACAATG AGTTACGATCTATCCGGCGTTATGGAAGGTCGTCAGTACTCGTCACAAGTCGATTCGCGTATGCCCGAAGGCAAG ACGTGGTTCTGGGGGGATTGCCGGGTGGAGACGCTCGGACTGACAGAAATCAACGGTGTGGAATGCGGGCTTACA GCGGCGCAGCGCGAAAACCCGCGCAAGTGGCAGGCAATCATCAAAATATCACACGGTGAAGTCGGTCACGATCTC CGGGGCCAGGCCGAGCTTCCTTCTTCTGTCGGCCGACCCTCCAAGTCTTCTTCGTCCGCTCCGAAGGGTACCAGC TCTCGGCCGAGAACTGGTCTTGAGCATATTGCGCAGACGAGTAAACTGGTCAGTTCTGTTATCGGCAGTGTACCC GATACTGAAGAGGACTCTTTTGATGATCAAGTGTATGGTGGTATCTCTGAGCTAGGGATTGGGGTTGGTCATTCT TCGGGGGAGGATAGTGATTATTCGAATGAGTAG |
| Transcript | >Pro_DTO377G3_2|g6145.t1 ATGTCTTACAGCAGCGAGGATGAGGACTCCAATGTTAATATTATCCCCATGGAGAATTTTCCCAGCGATGGAGAC ATGAGTACATGGCCCTCAAGTCACTACATTGAACGCTCCGACTTGCGCTGGCGGCAGTTACTTGCTGAAAACTGG CTCAAAGATATGGGCACTTATGAAGATGGTGTCATTCATACCATTGAGAAGTTGCCTGATGGATACTGTCTATTT GAGCGACCTCGTGGGACTAATCCTAGCATGTTTGATTCTTTTCTTTTTGGTCATCCAAGCGGTCGGTATTTTCAA TCACAGTTATCTTTCTTGCCACATTTCCTCTCTCTGGTCAAGAACGAGCTTGACAAGTGCCAATGCAAGCCCTGT GGTAAAATGAAGATGAGCGAAGGGACTGCAGTGCAAGGGAAGGCGGGACAGAGGACTAGACGCGTTGTACAACCA ATCATTGATGAGCGCCGACCCACCGATGCAGAGGGACCAGATTACTGGCGAATCTTGATTATGAAATTGAAAGAT AAGGGGGCCCTCGACGAAGATATTGAGCAGCGGTTCAATTTTGACTGGGTATTGACTCACGAATGGCTTTCTGAT TACTTTATGAAACTGGTTCTGGATCCCGCTTACATCCCCCGTCGTGGTGAGCTTGTTCTCTGGATCTGGCAGGGT CTCGAAGACGGCTGCTTGATGCGCAACCCTGAGACTGGCTTCATTGAGATATTTGGCAACGATAATAAGTGGCAT GGTGTGCCCAATTGGCGTGCCGGCGTGGTGACCCAAATCCCAGAGGACGAAGGGCATATGGTAAATATCATTGAA GGCTCCGATAATCCACGCGGGCTGAGCTACTCTGGATTCCGTTTGGAGACTCTGCCAGATCCGGTGGGTAGTGAT AAGTCTTACTCGGTGCAATATGCCTATGTTCCGTTGCGTAACATCAAGCCTTTTAACACATGGCAACTCTACCTC AATGGCCAAGAGCGAGGGGATATTCACCCATCTATTGAGAATGCCATGACTGTTATGTCTTCGTGGAGCATGGTT CACAAATTCCATGTTATTGGCACATGGCCCAGCGCCAGGATCTACTGCAAGGGAATCTTCGTCGGGGCCGAACTC CTTGCCTTACACGACACCGTCCGTCTGAGGCCACATGGATTCCATCACGACCAGCTCAAGTACGGAACAGTCGGC GAAGTGACAGACGTGATGGTTATTGAAAAAATCGCGCTCTATCTTTCAGAGTGCATCGACGACAACGAGGAGCAG CTAGCCAAACACTTCACAGCCCTGATATCCGGTAAGGTGTTCACCACTGATCCTAGTCGCGTTACCCAAGAAGGC CCATTCCAAGGCAGAAACCCAGTGTCATCCGGCGGATCAGCAACTGGTCCTATCCCACTCACTACGGAAGAAGCA ATCGCTACCTTCCGCCAGGTCGGCATGGGCGACTACGGTCCCTGGTACCGTATGGCCGATGGTAGAACCTGCAAC GTCTCCCCACACCTTATCGTGGGTCGCTGCTACGAACCGCTCGCGGCAGAGCTTATGTTCGGCACCCATACAATG AGTTACGATCTATCCGGCGTTATGGAAGGTCGTCAGTACTCGTCACAAGTCGATTCGCGTATGCCCGAAGGCAAG ACGTGGTTCTGGGGGGATTGCCGGGTGGAGACGCTCGGACTGACAGAAATCAACGGTGTGGAATGCGGGCTTACA GCGGCGCAGCGCGAAAACCCGCGCAAGTGGCAGGCAATCATCAAAATATCACACGGTGAAGTCGGTCACGATCTC CGGGGCCAGGCCGAGCTTCCTTCTTCTGTCGGCCGACCCTCCAAGTCTTCTTCGTCCGCTCCGAAGGGTACCAGC TCTCGGCCGAGAACTGGTCTTGAGCATATTGCGCAGACGAGTAAACTGGTCAGTTCTGTTATCGGCAGTGTACCC GATACTGAAGAGGACTCTTTTGATGATCAAGTGTATGGTGGTATCTCTGAGCTAGGGATTGGGGTTGGTCATTCT TCGGGGGAGGATAGTGATTATTCGAATGAGTAG |
| Gene | >Pro_DTO377G3_2|g6145.t1 ATGTCTTACAGCAGCGAGGATGAGGACTCCAATGTTAATATTATCCCCATGGAGAATTTTCCCAGCGATGGAGAC ATGAGTACATGGCCCTCAAGTCACTACATTGAACGCTCCGACTTGCGCTGGCGGCAGTTACTTGCTGAAAACTGG CTCAAAGATATGGGCACTTATGAAGATGGTGAGTTGATTGCAGATGCTTCAGATTCACGTTTTGTTTGGCATACT GGCTTTGTCGCACTGTATTTTTTTCCGCATTGCATTTGTTGGGTGACTGCATCTGTCGTCTCATGCTCATTCGTT CATTCGCTCCTTCGTGCTTTGTGCTGGCCTGTTATGGCCTCTCTTTTCTGTTTGTATACTTTATACCTCTACTCT CAGACTAACAGAGCATATATTAGGTGTCATTCATACCATTGAGAAGTTGCCTGATGGATACTGTCTATTTGAGCG ACCTCGTGGGACTAATCCTAGCATGGTGGGCCTTTCTGGTGTTCCCATCTTGATTTGCAGCTAACAATCATATAT GAAGTTTGATTCTTTTCTTTTTGGTCATCCAAGCGGTCGGTATTTTCAATCACAGTTATCTTTCTTGCCACATTT CCTCTCTCTGGTCAAGAACGAGCTTGACAAGTGCCAATGCAAGCCCTGTGGTAAAATGAAGATGAGCGAAGGGAC TGCAGTGCAAGGGAAGGCGGGACAGAGGACTAGACGCGTTGTACAACCAAGTGAGTACTACCATGCCTCTTACGT TAGATCGTTTATTGATACCTATTGAGTCATTGATGAGCGCCGACCCACCGATGCAGAGGGACCAGATTACTGGCG AATCTTGATTATGAAATTGAAAGATAAGGGGGCCCTCGACGAAGATATTGAGCAGCGGTTCAATTTTGACTGGGT ATTGACTCACGAATGGCTTTCTGATTACTTTATGAAACTGGTTCTGGATCCCGCTTACATCCCCCGTCGTGGTGA GCTTGTTCTCTGGATCTGGCAGGGTCTCGAAGACGGCTGCTTGATGCGCAACCCTGAGACTGGCTTCATTGAGAT ATTTGGCAACGATAATAAGTGGCATGGTGTGCCCAATTGGCGTGCCGGCGTGGTGACCCAAATCCCAGAGGACGA AGGGCATATGGTAAATATCATTGAAGGCTCCGATAATCCACGCGGGCTGAGCTACTCTGGATTCCGTTTGGAGAC TCTGCCAGATCCGGTGGGTAGTGATAAGTCTTACTCGGTGCAATATGCCTATGTTCCGTTGCGTAACATCAAGCC TTTTAACACATGGCAACTCTACCTCAATGGCCAAGAGCGAGGGGATATTCACCCATCTATTGAGAATGCCATGAC TGTTATGTCTTCGTGGAGCATGGTTCACAAATTCCATGTTATTGGCACATGGCCCAGCGCCAGGATCTACTGCAA GGGAATCTTCGTCGGGGCCGAACTCCTTGCCTTACACGACACCGTCCGTCTGAGGCCACATGGATTCCATCACGA CCAGCTCAAGTACGGAACAGTCGGCGAAGTGACAGACGTGATGGTTATTGAAAAAATCGCGCTCTATCTTTCAGA GTGCATCGACGACAACGAGGAGCAGCTAGCCAAACACTTCACAGCCCTGATATCCGGTAAGGTGTTCACCACTGA TCCTAGTCGCGTTACCCAAGAAGGCCCATTCCAAGGCAGAAACCCAGTGTCATCCGGCGGATCAGCAACTGGTCC TATCCCACTCACTACGGAAGAAGCAATCGCTACCTTCCGCCAGGTCGGCATGGGCGACTACGGTCCCTGGTACCG TATGGCCGATGGTAGAACCTGCAACGTCTCCCCACACCTTATCGTGGGTCGCTGCTACGAACCGCTCGCGGCAGA GCTTATGTTCGGCACCCATACAATGAGTTACGATCTATCCGGCGTTATGGAAGGTCGTCAGTACTCGTCACAAGT CGATTCGCGTATGCCCGAAGGCAAGACGTGGTTCTGGGGGGATTGCCGGGTGGAGACGCTCGGACTGACAGAAAT CAACGGTGTGGAATGCGGGCTTACAGCGGCGCAGCGCGAAAACCCGCGCAAGTGGCAGGCAATCATCAAAATATC ACACGGTGAAGTCGGTCACGATCTCCGGGGCCAGGCCGAGCTTCCTTCTTCTGTCGGCCGACCCTCCAAGTCTTC TTCGTCCGCTCCGAAGGGTACCAGCTCTCGGCCGAGAACTGGTCTTGAGCATATTGCGCAGACGAGTAAACTGGT CAGTTCTGTTATCGGCAGTGTACCCGATACTGAAGAGGACTCTTTTGATGATCAAGTGTATGGTGGTATCTCTGA GCTAGGGATTGGGGTTGGTCATTCTTCGGGGGAGGATAGTGATTATTCGAATGAGTAG |