Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6140.t1
Gene name
Locationscaffold_16:68743..70277
Strand+
Gene length (bp)1534
Transcript length (bp)1416
Coding sequence length (bp)1416
Protein length (aa) 472

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03663 Glyco_hydro_76 Glycosyl hydrolase family 76 1.5E-136 48 414

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 39 0.45

Transmembrane Domains

Domain # Start End Length
1 446 468 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 2.65 0.64 4.66
5d_25C Five days - 25 degrees Celsius 0.97 0.03 1.91
7d_25C Seven days - 25 degrees Celsius 1.39 0.11 2.67
10d_25C Ten days - 25 degrees Celsius 3.60 0.58 6.62
7d_15C Seven days - 15 degrees Celsius 4.63 1.34 7.92
7d_30C Seven days - 30 degrees Celsius 8.46 3.14 13.78

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.050334 no
3d_25C 7d_25C 0.196664 no
3d_25C 7d_15C 0.180711 no
3d_25C 7d_30C 0.001278 yes
3d_25C 10d_25C 0.577307 no
5d_25C 7d_25C 0.604709 no
5d_25C 7d_15C 0.004840 yes
5d_25C 7d_30C 0.000700 yes
5d_25C 10d_25C 0.016361 yes
7d_25C 7d_15C 0.011993 yes
7d_25C 7d_30C 0.000700 yes
7d_25C 10d_25C 0.069111 no
7d_15C 7d_30C 0.126950 no
7d_15C 10d_25C 0.666889 no
7d_30C 10d_25C 0.058988 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6140.t1
MHFLRCRLPLSSRQMRPVILSRWLTTLLACLLIQNVIAIDVNPEDETSLKDAAKTVATTMMDFYNDRDSKDIPGK
LDGTWWEGGSMFMTLIQYWYLTGDTQFNDAIQEGMYWQKGKNDFFPSNYSQYLGNDDQVFWGLAAITAGELNFPE
RDGEASWISLAEGVFNGQIPRWDMTSCGGGLRWQIWPYQDGYNMKNAISNGGLFQLSARLALYTKNSTYAEWAEK
IWDWSASTPLLRKTWVIADTTTNAASCKDHGDHQWTYNYATYIAGAGYMHNYTNGAESKWLEGVTGLMKTSDQFF
PASGAKQIISDITCEPINKCDRNQKTFKAYFTSWLGFMSLIVPSNVTAEMMGKFKSSAVAAGQQCSGGSDGKHCG
VRWTKKTEWDGTSGLEQQMSVLGVLNAVMVPFKAQGPYNADNGGTSQSDALGGTNTESNLEPDPITTGDRVGAGI
LTAIFVILWVGTISWMIFGDK*
Coding >Pro_DTO377G3_2|g6140.t1
ATGCATTTCCTCCGATGTCGGTTACCGCTCAGCTCGCGTCAAATGAGGCCTGTGATCCTTTCTAGGTGGTTGACC
ACCCTTTTGGCCTGCCTTCTCATACAAAATGTCATCGCAATTGACGTTAACCCTGAGGATGAGACTTCCCTCAAA
GATGCCGCCAAGACCGTTGCCACCACCATGATGGATTTCTACAATGACCGCGACTCGAAAGATATTCCAGGGAAA
TTGGACGGTACCTGGTGGGAGGGTGGTTCAATGTTTATGACCCTCATCCAGTACTGGTATCTAACAGGCGATACC
CAGTTCAACGACGCCATCCAGGAAGGCATGTATTGGCAAAAAGGCAAAAACGACTTTTTTCCAAGCAACTACTCC
CAATATCTGGGTAACGACGATCAAGTGTTCTGGGGATTGGCGGCGATTACCGCCGGGGAATTAAACTTCCCAGAA
AGAGACGGTGAAGCCTCCTGGATATCTCTGGCGGAGGGTGTCTTTAATGGACAGATTCCTCGCTGGGATATGACT
AGTTGCGGTGGGGGTTTGCGATGGCAGATCTGGCCTTACCAGGATGGGTATAATATGAAAAATGCCATATCTAAC
GGCGGATTGTTCCAGCTGTCAGCGCGCCTGGCACTATATACCAAGAACTCGACCTATGCCGAATGGGCCGAGAAG
ATTTGGGACTGGAGCGCGTCTACACCGCTGTTGAGGAAGACCTGGGTTATCGCCGATACCACTACTAACGCCGCG
AGTTGCAAGGATCACGGTGATCATCAATGGACTTACAACTACGCTACGTATATCGCCGGTGCGGGCTATATGCAC
AATTACACCAATGGCGCCGAAAGCAAATGGCTCGAAGGCGTAACAGGACTGATGAAGACATCTGATCAGTTTTTC
CCCGCCTCCGGTGCGAAGCAAATAATATCGGACATCACCTGCGAGCCAATCAATAAGTGTGATCGCAATCAGAAG
ACCTTCAAGGCCTACTTCACTTCCTGGCTCGGATTCATGTCGTTGATAGTACCATCCAATGTCACGGCGGAGATG
ATGGGGAAATTCAAGAGCTCCGCTGTCGCTGCCGGTCAGCAATGCTCCGGTGGAAGCGATGGGAAGCATTGTGGA
GTTCGATGGACGAAGAAGACGGAATGGGATGGAACTTCGGGCTTGGAGCAGCAGATGTCTGTTTTGGGTGTTCTT
AATGCTGTCATGGTTCCATTCAAGGCCCAGGGCCCTTACAATGCTGACAATGGTGGGACATCCCAAAGTGACGCA
CTTGGGGGTACCAACACCGAGAGTAACTTGGAGCCTGACCCTATCACCACAGGTGATAGGGTTGGCGCGGGAATC
TTGACTGCGATCTTCGTTATACTTTGGGTCGGGACGATATCTTGGATGATTTTTGGAGACAAGTAG
Transcript >Pro_DTO377G3_2|g6140.t1
ATGCATTTCCTCCGATGTCGGTTACCGCTCAGCTCGCGTCAAATGAGGCCTGTGATCCTTTCTAGGTGGTTGACC
ACCCTTTTGGCCTGCCTTCTCATACAAAATGTCATCGCAATTGACGTTAACCCTGAGGATGAGACTTCCCTCAAA
GATGCCGCCAAGACCGTTGCCACCACCATGATGGATTTCTACAATGACCGCGACTCGAAAGATATTCCAGGGAAA
TTGGACGGTACCTGGTGGGAGGGTGGTTCAATGTTTATGACCCTCATCCAGTACTGGTATCTAACAGGCGATACC
CAGTTCAACGACGCCATCCAGGAAGGCATGTATTGGCAAAAAGGCAAAAACGACTTTTTTCCAAGCAACTACTCC
CAATATCTGGGTAACGACGATCAAGTGTTCTGGGGATTGGCGGCGATTACCGCCGGGGAATTAAACTTCCCAGAA
AGAGACGGTGAAGCCTCCTGGATATCTCTGGCGGAGGGTGTCTTTAATGGACAGATTCCTCGCTGGGATATGACT
AGTTGCGGTGGGGGTTTGCGATGGCAGATCTGGCCTTACCAGGATGGGTATAATATGAAAAATGCCATATCTAAC
GGCGGATTGTTCCAGCTGTCAGCGCGCCTGGCACTATATACCAAGAACTCGACCTATGCCGAATGGGCCGAGAAG
ATTTGGGACTGGAGCGCGTCTACACCGCTGTTGAGGAAGACCTGGGTTATCGCCGATACCACTACTAACGCCGCG
AGTTGCAAGGATCACGGTGATCATCAATGGACTTACAACTACGCTACGTATATCGCCGGTGCGGGCTATATGCAC
AATTACACCAATGGCGCCGAAAGCAAATGGCTCGAAGGCGTAACAGGACTGATGAAGACATCTGATCAGTTTTTC
CCCGCCTCCGGTGCGAAGCAAATAATATCGGACATCACCTGCGAGCCAATCAATAAGTGTGATCGCAATCAGAAG
ACCTTCAAGGCCTACTTCACTTCCTGGCTCGGATTCATGTCGTTGATAGTACCATCCAATGTCACGGCGGAGATG
ATGGGGAAATTCAAGAGCTCCGCTGTCGCTGCCGGTCAGCAATGCTCCGGTGGAAGCGATGGGAAGCATTGTGGA
GTTCGATGGACGAAGAAGACGGAATGGGATGGAACTTCGGGCTTGGAGCAGCAGATGTCTGTTTTGGGTGTTCTT
AATGCTGTCATGGTTCCATTCAAGGCCCAGGGCCCTTACAATGCTGACAATGGTGGGACATCCCAAAGTGACGCA
CTTGGGGGTACCAACACCGAGAGTAACTTGGAGCCTGACCCTATCACCACAGGTGATAGGGTTGGCGCGGGAATC
TTGACTGCGATCTTCGTTATACTTTGGGTCGGGACGATATCTTGGATGATTTTTGGAGACAAGTAG
Gene >Pro_DTO377G3_2|g6140.t1
ATGCATTTCCTCCGATGTCGGTTACCGCTCAGCTCGCGTCAAATGAGGCCTGTGATCCTTTCTAGGTGGTTGACC
ACCCTTTTGGCCTGCCTTCTCATACAAAATGTCATCGCAATTGACGTTAACCCTGAGGATGAGAGTGTGTTCATT
TTGTACCCTGGCTAGGCATTTCAAATGACTGACATATACCTCTCCTGACAGCTTCCCTCAAAGATGCCGCCAAGA
CCGTTGCCACCACCATGATGGATTTCTACAATGACCGCGACTCGAAAGATATTCCAGGGAAATTGGACGGTACCT
GGTGGGAGGGTGGTTCAATGTTTATGACCCTCATCCAGTACTGGTATCTAACAGGCGATACCCAGTTCAACGACG
CCATCCAGGAAGGCATGTATTGGCAAAAAGGCAAAAACGACTTTTTTCCAAGCAACTACTCCCAATATCTGGGTA
ACGACGATCAAGTGTTCTGGGGATTGGCGGCGATTACCGCCGGGGAATTAAACTTCCCAGAAAGAGACGGTGAAG
CCTCCTGGATATCTCTGGCGGAGGGTGTCTTTAATGGACAGATTCCTCGCTGGGATATGACTAGTTGCGGTGGGG
GTTTGCGATGGCAGATCTGGCCTTACCAGGATGGGTATAATATGAAAAATGCCATATCTAACGGCGGATTGTTCC
AGCTGTCAGCGCGCCTGGCACTATATACCAAGAACTCGACCTATGCCGAATGGGCCGAGAAGATTTGGGACTGGA
GCGCGTCTACACCGCTGTTGAGGAAGACCTGGGTTATCGCCGATACCACTACTAACGCCGCGAGTTGCAAGGATC
ACGGTGATCATCAATGGACTTACAACTACGCTACGTATATCGCCGGTGCGGGCTATATGCACAATTACGCATGTC
TATCCCCTGTCCCTGACAAGTCGAGAATCTCAATTAACAGGTTTTATAGACCAATGGCGCCGAAAGCAAATGGCT
CGAAGGCGTAACAGGACTGATGAAGACATCTGATCAGTTTTTCCCCGCCTCCGGTGCGAAGCAAATAATATCGGA
CATCACCTGCGAGCCAATCAATAAGTGTGATCGCAATCAGAAGACCTTCAAGGCCTACTTCACTTCCTGGCTCGG
ATTCATGTCGTTGATAGTACCATCCAATGTCACGGCGGAGATGATGGGGAAATTCAAGAGCTCCGCTGTCGCTGC
CGGTCAGCAATGCTCCGGTGGAAGCGATGGGAAGCATTGTGGAGTTCGATGGACGAAGAAGACGGAATGGGATGG
AACTTCGGGCTTGGAGCAGCAGATGTCTGTTTTGGGTGTTCTTAATGCTGTCATGGTTCCATTCAAGGCCCAGGG
CCCTTACAATGCTGACAATGGTGGGACATCCCAAAGTGACGCACTTGGGGGTACCAACACCGAGAGTAACTTGGA
GCCTGACCCTATCACCACAGGTGATAGGGTTGGCGCGGGAATCTTGACTGCGATCTTCGTTATACTTTGGGTCGG
GACGATATCTTGGATGATTTTTGGAGACAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail