Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6139.t1
Gene name
Locationscaffold_16:66823..67445
Strand+
Gene length (bp)622
Transcript length (bp)555
Coding sequence length (bp)555
Protein length (aa) 185

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 3.3E-04 16 50
PF01476 LysM LysM domain 5.6E-03 100 130

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 50 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6139.t1
MISATVVCNFSSVPNKGDTCSSFASSWGQTLANFQALNISISCSTLTAGQSCCVVGTVKDEPATTTSTITTTALT
TTTSTSQYDPTQSGIPPSCDGFHLIASGDQCDTIEAKYGITEAQFKAWNPSIDSSCSNLWLDYYVCVQIPGATTT
TSTPQPTSTGPWPQMPGVASNCKPFYKVKTDDNC*
Coding >Pro_DTO377G3_2|g6139.t1
ATGATCTCTGCCACCGTTGTCTGTAACTTCTCCAGCGTACCTAACAAAGGCGATACTTGCTCGTCCTTCGCTTCA
TCCTGGGGTCAGACTCTTGCAAATTTCCAAGCTCTGAACATTAGCATCTCTTGCTCGACTCTCACAGCCGGCCAA
AGCTGCTGTGTTGTTGGCACAGTCAAAGACGAGCCAGCGACCACGACGTCCACGATAACCACGACGGCCTTGACA
ACCACAACTTCCACCTCCCAGTATGATCCAACCCAGTCTGGCATTCCTCCTAGCTGTGATGGCTTCCATCTCATC
GCATCCGGTGACCAATGCGATACGATTGAGGCCAAGTACGGCATCACTGAGGCCCAATTTAAGGCCTGGAACCCC
AGCATTGATAGCTCATGCTCTAACCTCTGGTTGGACTACTACGTCTGCGTGCAAATCCCGGGCGCTACAACAACC
ACCTCGACTCCCCAACCGACGTCTACGGGGCCTTGGCCGCAGATGCCTGGCGTCGCGAGCAACTGCAAACCCTTT
TACAAGGTCAAGACTGACGATAACTGTTAA
Transcript >Pro_DTO377G3_2|g6139.t1
ATGATCTCTGCCACCGTTGTCTGTAACTTCTCCAGCGTACCTAACAAAGGCGATACTTGCTCGTCCTTCGCTTCA
TCCTGGGGTCAGACTCTTGCAAATTTCCAAGCTCTGAACATTAGCATCTCTTGCTCGACTCTCACAGCCGGCCAA
AGCTGCTGTGTTGTTGGCACAGTCAAAGACGAGCCAGCGACCACGACGTCCACGATAACCACGACGGCCTTGACA
ACCACAACTTCCACCTCCCAGTATGATCCAACCCAGTCTGGCATTCCTCCTAGCTGTGATGGCTTCCATCTCATC
GCATCCGGTGACCAATGCGATACGATTGAGGCCAAGTACGGCATCACTGAGGCCCAATTTAAGGCCTGGAACCCC
AGCATTGATAGCTCATGCTCTAACCTCTGGTTGGACTACTACGTCTGCGTGCAAATCCCGGGCGCTACAACAACC
ACCTCGACTCCCCAACCGACGTCTACGGGGCCTTGGCCGCAGATGCCTGGCGTCGCGAGCAACTGCAAACCCTTT
TACAAGGTCAAGACTGACGATAACTGTTAA
Gene >Pro_DTO377G3_2|g6139.t1
ATGATCTCTGCCACCGTTGTCTGTAACTTCTCCAGCGTACCTAACAAAGGCGATACTTGCTCGTCCTTCGCTTCA
TCCTGGGGTCAGACTCTTGCAAATTTCCAAGCTCTGAACATTAGCATCTCTTGCTCGACTCTCACAGCCGGCCAA
AGCTGCTGTGTTGTTGGCACAGTCAAAGACGAGCCAGCGACCACGACGTCCACGATAACCACGACGGCCTTGACA
ACCACAACTTCCACCTCCCAGTATGATCCAACCCAGTCTGGCATTCCTCCTAGCTGTGATGGCTTCCATCTCATC
GCATCCGGTGACCAATGCGATACGATTGAGGCCAAGTACGGCATCACTGAGGCCCAATTTAAGGCCTGGAACCCC
AGCATTGATAGCTGTATGCCCACCACTTTTATATCATTTCCTCTTCTGTATATTGTCATTCACTGACGCTTTTTT
ACTAGCATGCTCTAACCTCTGGTTGGACTACTACGTCTGCGTGCAAATCCCGGGCGCTACAACAACCACCTCGAC
TCCCCAACCGACGTCTACGGGGCCTTGGCCGCAGATGCCTGGCGTCGCGAGCAACTGCAAACCCTTTTACAAGGT
CAAGACTGACGATAACTGTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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