© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6133.t1 |
| Gene name | |
| Location | scaffold_16:54683..57595 |
| Strand | + |
| Gene length (bp) | 2912 |
| Transcript length (bp) | 2508 |
| Coding sequence length (bp) | 2508 |
| Protein length (aa) | 836 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-09 | 6 | 67 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-17 | 314 | 384 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.3E-10 | 497 | 557 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.9E-11 | 610 | 684 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.4E-15 | 715 | 783 |
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-01 | 725 | 795 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 61.58 | 37.77 | 85.40 |
| 5d_25C | Five days - 25 degrees Celsius | 63.15 | 38.78 | 87.51 |
| 7d_25C | Seven days - 25 degrees Celsius | 73.04 | 44.57 | 101.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 57.21 | 35.12 | 79.30 |
| 7d_15C | Seven days - 15 degrees Celsius | 80.95 | 48.66 | 113.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 60.36 | 37.03 | 83.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.940056 | no |
| 3d_25C | 7d_25C | 0.494739 | no |
| 3d_25C | 7d_15C | 0.222685 | no |
| 3d_25C | 7d_30C | 0.951700 | no |
| 3d_25C | 10d_25C | 0.801478 | no |
| 5d_25C | 7d_25C | 0.575705 | no |
| 5d_25C | 7d_15C | 0.284873 | no |
| 5d_25C | 7d_30C | 0.884358 | no |
| 5d_25C | 10d_25C | 0.718824 | no |
| 7d_25C | 7d_15C | 0.720550 | no |
| 7d_25C | 7d_30C | 0.440632 | no |
| 7d_25C | 10d_25C | 0.291041 | no |
| 7d_15C | 7d_30C | 0.193110 | no |
| 7d_15C | 10d_25C | 0.108148 | no |
| 7d_30C | 10d_25C | 0.864888 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6133.t1 MESTRVFVGGLPPTCSNDQLKKHFATRFQVTDAHVLPKRRMGFVGFKSHEAALQAVKHFNKTYMKMSKIAVDIAR PIDSNDAEDAHPTRRRDATNDNDASLDNNLKRKRDGENKSQDPKLQEYLSLMGSSSKTRTWANDDDMIKPSVDTV PVINQPAQEEEQIQDLPSHPKKAKTEKPSTVATPEQPEPMVIDKIEEQEAQETPEQDNSAEPEEETRPVSDADWL RSKTSRLLGLLDEEEQDEFDQHKAAAPTTAPIKAHSPPSSSGDESPQRDEESRTAAIEKIAPNTTDVDSITEATP EDPNIDLIRKSARLFLRNLAYDTTESDLQPIFERFGKIEEIHVAFDTRSTTSKGFAYVQYSHADAAIEAYQTLDG KHFQGRLLHILPASAKKTYKIDEYELSKLPLKKQREIKRKQNASGSSFSWNSLYMNADAVMSSVASRLGVSKSEL LDPTSSEAAVKQAHAETHVIQETKAYFASNGVNIDAFKQRERGNTAILVKNFSYGVTSAELRSLFDPYGKIIRLL MPPSGTIAIVQFAQPDEAQKAFKGMAYRKIGDSILFLEKAPKNLFDGSAAPPTLAPETRGKDQGFSTADTFAADE PDDSVATTTLFVKNLNFSTTNEKFLEVFRSLDGFITGRIKTKPDPKRPGQTLSMGFGFADFKTKGQAQAALSAMN GYKLDQHELLIRASHKGKDAAEERRREDTAKKVAARRTKIIIKNLPFQATKKDIRSLFGAYGQLRSVRVPQKFDH TARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFVNEEAVDPEEELARLEKKVGEQMDRVKLQQLTTGAGRK KFTVGGQEEE* |
| Coding | >Pro_DTO377G3_2|g6133.t1 ATGGAGAGCACTAGAGTGTTCGTGGGTGGTCTCCCACCGACATGCTCTAATGATCAGCTAAAGAAACATTTTGCA ACTCGCTTTCAAGTCACCGATGCTCATGTCCTACCTAAACGTAGGATGGGGTTCGTCGGCTTCAAAAGCCATGAA GCAGCCCTGCAAGCTGTGAAGCACTTCAACAAGACATACATGAAGATGTCGAAGATCGCTGTAGACATCGCTCGT CCGATTGACTCAAATGACGCTGAGGATGCCCACCCCACACGACGACGTGATGCCACGAATGATAATGATGCATCG TTGGATAACAACCTCAAGCGCAAGAGGGACGGCGAGAACAAATCACAGGACCCTAAGCTACAAGAGTACCTCTCT CTGATGGGATCATCATCGAAGACTCGGACATGGGCCAACGATGATGATATGATCAAGCCGTCAGTGGACACGGTT CCCGTTATTAACCAACCCGCGCAGGAAGAAGAGCAGATTCAGGACCTGCCTTCACACCCAAAAAAGGCAAAGACA GAAAAACCTTCCACGGTAGCAACGCCTGAGCAGCCTGAGCCCATGGTAATTGACAAGATTGAAGAACAGGAGGCT CAAGAAACACCAGAACAGGACAACTCTGCGGAGCCTGAAGAGGAGACTAGACCTGTATCTGATGCAGATTGGCTA CGGTCAAAGACGAGTCGTTTGTTGGGCCTTCTCGATGAGGAAGAACAAGATGAGTTTGATCAACACAAGGCCGCC GCACCGACTACTGCGCCGATCAAAGCTCATTCACCACCTTCCTCGTCTGGCGATGAGTCGCCTCAGCGTGACGAA GAATCGCGCACTGCGGCCATTGAGAAAATTGCGCCCAACACGACTGACGTTGACAGCATCACCGAGGCAACGCCG GAAGATCCGAATATCGATCTTATTCGGAAATCGGCCCGTTTATTCCTCCGGAATCTTGCCTATGACACCACGGAA TCTGATCTACAACCGATTTTTGAACGCTTTGGAAAGATTGAGGAGATTCACGTTGCTTTTGACACACGCTCCACA ACTAGTAAAGGCTTTGCTTATGTGCAATACTCGCATGCTGATGCGGCCATTGAGGCCTACCAGACCCTTGATGGC AAGCATTTCCAGGGTCGTCTGCTCCACATCTTGCCTGCTTCTGCGAAAAAGACCTACAAGATTGACGAATACGAA TTGTCAAAGCTTCCTCTGAAGAAGCAGAGGGAGATCAAGCGAAAACAAAACGCCTCTGGATCGTCATTTAGTTGG AACTCCCTATACATGAATGCCGATGCTGTGATGTCATCAGTGGCCTCAAGGCTCGGAGTCTCCAAATCTGAACTG CTTGATCCCACTTCTTCAGAAGCCGCCGTCAAGCAAGCACATGCTGAAACGCATGTGATTCAAGAAACTAAAGCC TACTTTGCTTCGAATGGAGTAAATATTGATGCTTTCAAGCAGCGCGAACGTGGGAACACGGCTATTTTGGTCAAG AACTTCTCATATGGTGTCACGTCGGCAGAGCTCAGGAGTCTGTTCGATCCATATGGCAAGATTATCCGACTCTTG ATGCCGCCAAGTGGCACTATTGCTATCGTGCAATTTGCGCAGCCTGACGAGGCCCAGAAGGCTTTCAAGGGCATG GCATACCGCAAGATAGGTGATTCTATCTTGTTCCTGGAGAAAGCACCGAAGAATTTGTTTGATGGTTCAGCAGCT CCACCCACACTTGCTCCAGAGACTCGGGGCAAGGATCAAGGTTTCTCAACTGCAGACACATTTGCCGCAGATGAA CCTGATGACAGCGTAGCAACTACGACACTCTTCGTAAAAAACCTGAATTTCTCGACCACAAATGAGAAGTTCCTG GAAGTGTTTCGATCTCTGGATGGCTTTATCACTGGTCGCATCAAGACCAAACCTGATCCCAAGCGACCAGGGCAG ACCCTCAGCATGGGATTCGGCTTTGCGGATTTCAAAACCAAGGGTCAAGCCCAGGCTGCTCTTTCAGCTATGAAC GGCTACAAGTTGGATCAGCACGAGCTTCTCATCCGCGCATCCCATAAAGGCAAGGATGCCGCCGAGGAGCGGAGG CGCGAAGATACCGCGAAGAAGGTTGCAGCGCGGAGAACCAAAATCATCATCAAGAACTTGCCGTTCCAGGCCACG AAGAAGGACATCAGATCTCTCTTCGGGGCATATGGACAACTTCGGTCTGTGCGTGTTCCCCAGAAGTTCGATCAT ACTGCTCGTGGTTTCGGTTTTGCAGACTTTGTAAGCGCTCGCGAAGCAGAAAATGCCATGGACGCGTTGAAAAAC ACGCATCTCCTGGGGAGACGATTGGTTTTGGAGTTCGTGAACGAGGAGGCCGTCGATCCCGAGGAGGAGCTCGCG CGCCTAGAGAAGAAGGTAGGAGAGCAGATGGACAGGGTCAAACTTCAACAGCTTACTACTGGCGCCGGGCGCAAG AAATTTACTGTAGGAGGGCAGGAGGAAGAGTGA |
| Transcript | >Pro_DTO377G3_2|g6133.t1 ATGGAGAGCACTAGAGTGTTCGTGGGTGGTCTCCCACCGACATGCTCTAATGATCAGCTAAAGAAACATTTTGCA ACTCGCTTTCAAGTCACCGATGCTCATGTCCTACCTAAACGTAGGATGGGGTTCGTCGGCTTCAAAAGCCATGAA GCAGCCCTGCAAGCTGTGAAGCACTTCAACAAGACATACATGAAGATGTCGAAGATCGCTGTAGACATCGCTCGT CCGATTGACTCAAATGACGCTGAGGATGCCCACCCCACACGACGACGTGATGCCACGAATGATAATGATGCATCG TTGGATAACAACCTCAAGCGCAAGAGGGACGGCGAGAACAAATCACAGGACCCTAAGCTACAAGAGTACCTCTCT CTGATGGGATCATCATCGAAGACTCGGACATGGGCCAACGATGATGATATGATCAAGCCGTCAGTGGACACGGTT CCCGTTATTAACCAACCCGCGCAGGAAGAAGAGCAGATTCAGGACCTGCCTTCACACCCAAAAAAGGCAAAGACA GAAAAACCTTCCACGGTAGCAACGCCTGAGCAGCCTGAGCCCATGGTAATTGACAAGATTGAAGAACAGGAGGCT CAAGAAACACCAGAACAGGACAACTCTGCGGAGCCTGAAGAGGAGACTAGACCTGTATCTGATGCAGATTGGCTA CGGTCAAAGACGAGTCGTTTGTTGGGCCTTCTCGATGAGGAAGAACAAGATGAGTTTGATCAACACAAGGCCGCC GCACCGACTACTGCGCCGATCAAAGCTCATTCACCACCTTCCTCGTCTGGCGATGAGTCGCCTCAGCGTGACGAA GAATCGCGCACTGCGGCCATTGAGAAAATTGCGCCCAACACGACTGACGTTGACAGCATCACCGAGGCAACGCCG GAAGATCCGAATATCGATCTTATTCGGAAATCGGCCCGTTTATTCCTCCGGAATCTTGCCTATGACACCACGGAA TCTGATCTACAACCGATTTTTGAACGCTTTGGAAAGATTGAGGAGATTCACGTTGCTTTTGACACACGCTCCACA ACTAGTAAAGGCTTTGCTTATGTGCAATACTCGCATGCTGATGCGGCCATTGAGGCCTACCAGACCCTTGATGGC AAGCATTTCCAGGGTCGTCTGCTCCACATCTTGCCTGCTTCTGCGAAAAAGACCTACAAGATTGACGAATACGAA TTGTCAAAGCTTCCTCTGAAGAAGCAGAGGGAGATCAAGCGAAAACAAAACGCCTCTGGATCGTCATTTAGTTGG AACTCCCTATACATGAATGCCGATGCTGTGATGTCATCAGTGGCCTCAAGGCTCGGAGTCTCCAAATCTGAACTG CTTGATCCCACTTCTTCAGAAGCCGCCGTCAAGCAAGCACATGCTGAAACGCATGTGATTCAAGAAACTAAAGCC TACTTTGCTTCGAATGGAGTAAATATTGATGCTTTCAAGCAGCGCGAACGTGGGAACACGGCTATTTTGGTCAAG AACTTCTCATATGGTGTCACGTCGGCAGAGCTCAGGAGTCTGTTCGATCCATATGGCAAGATTATCCGACTCTTG ATGCCGCCAAGTGGCACTATTGCTATCGTGCAATTTGCGCAGCCTGACGAGGCCCAGAAGGCTTTCAAGGGCATG GCATACCGCAAGATAGGTGATTCTATCTTGTTCCTGGAGAAAGCACCGAAGAATTTGTTTGATGGTTCAGCAGCT CCACCCACACTTGCTCCAGAGACTCGGGGCAAGGATCAAGGTTTCTCAACTGCAGACACATTTGCCGCAGATGAA CCTGATGACAGCGTAGCAACTACGACACTCTTCGTAAAAAACCTGAATTTCTCGACCACAAATGAGAAGTTCCTG GAAGTGTTTCGATCTCTGGATGGCTTTATCACTGGTCGCATCAAGACCAAACCTGATCCCAAGCGACCAGGGCAG ACCCTCAGCATGGGATTCGGCTTTGCGGATTTCAAAACCAAGGGTCAAGCCCAGGCTGCTCTTTCAGCTATGAAC GGCTACAAGTTGGATCAGCACGAGCTTCTCATCCGCGCATCCCATAAAGGCAAGGATGCCGCCGAGGAGCGGAGG CGCGAAGATACCGCGAAGAAGGTTGCAGCGCGGAGAACCAAAATCATCATCAAGAACTTGCCGTTCCAGGCCACG AAGAAGGACATCAGATCTCTCTTCGGGGCATATGGACAACTTCGGTCTGTGCGTGTTCCCCAGAAGTTCGATCAT ACTGCTCGTGGTTTCGGTTTTGCAGACTTTGTAAGCGCTCGCGAAGCAGAAAATGCCATGGACGCGTTGAAAAAC ACGCATCTCCTGGGGAGACGATTGGTTTTGGAGTTCGTGAACGAGGAGGCCGTCGATCCCGAGGAGGAGCTCGCG CGCCTAGAGAAGAAGGTAGGAGAGCAGATGGACAGGGTCAAACTTCAACAGCTTACTACTGGCGCCGGGCGCAAG AAATTTACTGTAGGAGGGCAGGAGGAAGAGTGA |
| Gene | >Pro_DTO377G3_2|g6133.t1 ATGGAGAGCACTAGAGTGTTCGTGGGTGGTCTCCCACCGACATGCTCTAATGATCAGCTAAAGAAACATTTTGCA ACTCGCTTTCAAGTCACCGATGCTCATGTCCTACCTAAACGTAGGATGGGGTTCGTCGGCTTCAAAAGCCATGAA GCAGCCCTGCAAGCTGTGAAGCACTTCAACAAGACATACATGAAGATGTCGAAGATCGCTGTAGACATCGCTCGT CCGGTATGTCGATTCTCAGCTCTTTTTGCTTCAGCCACCCTCCTTTCGCCTGTGCACGCTGACCAATTAAGGTGG TCTTGAGACTGACCCGTATTATTGCAGATTGACTCAAATGACGCTGAGGATGCCCACCCCACACGACGACGTGAT GCCACGAATGATAATGATGCATCGTTGGATAACAACCTCAAGCGCAAGAGGGACGGCGAGAACAAATCACAGGAC CCTAAGCTACAAGAGTACCTCTCTCTGATGGGATCATCATCGAAGACTCGGACATGGGCCAACGATGATGATATG ATCAAGCCGTCAGTGGACACGGTTCCCGTTATTAACCAACCCGCGCAGGAAGAAGAGCAGATTCAGGACCTGCCT TCACACCCAAAAAAGGCAAAGACAGAAAAACCTTCCACGGTAGCAACGCCTGAGCAGCCTGAGCCCATGGTAATT GACAAGATTGAAGAACAGGAGGCTCAAGAAACACCAGAACAGGACAACTCTGCGGAGCCTGAAGAGGAGACTAGA CCTGTATCTGATGCAGATTGGCTACGGTCAAAGACGAGTCGTTTGTTGGGCCTTCTCGATGAGGAAGAACAAGAT GAGTTTGATCAACACAAGGCCGCCGCACCGACTACTGCGCCGATCAAAGCTCATTCACCACCTTCCTCGTCTGGC GATGAGTCGCCTCAGCGTGACGAAGAATCGCGCACTGCGGCCATTGAGAAAATTGCGCCCAACACGACTGACGTT GACAGCATCACCGAGGCAACGCCGGAAGATCCGAATATCGATCTTATTCGGAAATCGGCCCGTTTATTCCTCCGG AATCTTGCCTATGACACCACGGAATCTGATCTACAACCGATTTTTGAACGCTTTGGAAAGATTGAGGAGGTTAGT ACTTACCTTTTTTTGCTTTCTCAACCCTGCCCCGCCTTTCCCCCAGTGCGGCAGACTAGCCTGTTTGTTACGAGT GCTCGTATGATGATTTTCCCGATAGGGACATCCGATGCAAATTGCAAATGATGTTACCAGGACAAGATATTTTAG TAGATGCTTCTTGACTATCTGAAAGAGCCAACTCAACCCACTTTTCCACATTTACACATTATATTCAATGACCTT GAGTACTAATTGAATATAGATTCACGTTGCTTTTGACACACGCTCCACAACTAGTAAAGGCTTTGCTTATGTGCA ATACTCGCATGCTGATGCGGCCATTGAGGCCTACCAGACCCTTGATGGCAAGCATTTCCAGGGTCGTCTGCTCCA CATCTTGCCTGCTTCTGCGAAAAAGACCTACAAGATTGACGAATACGAATTGTCAAAGCTTCCTCTGAAGAAGCA GAGGGAGATCAAGCGAAAACAAAACGCCTCTGGATCGTCATTTAGTTGGAACTCCCTATACATGAATGTGAGTTT ACCTCTTACCACCACCAATCAAAAGGTTGAGACTAATTTCGCTACAGGCCGATGCTGTGATGTCATCAGTGGCCT CAAGGCTCGGAGTCTCCAAATCTGAACTGCTTGATCCCACTTCTTCAGAAGCCGCCGTCAAGCAAGCACATGCTG AAACGCATGTGATTCAAGAAACTAAAGCCTACTTTGCTTCGAATGGAGTAAATATTGATGCTTTCAAGCAGCGCG AACGTGGGAACACGGCTATTTTGGTCAAGAACTTCTCATATGGTGTCACGTCGGCAGAGCTCAGGAGTCTGTTCG ATCCATATGGCAAGATTATCCGACTCTTGATGCCGCCAAGTGGCACTATTGCTATCGTGCAATTTGCGCAGCCTG ACGAGGCCCAGAAGGCTTTCAAGGGCATGGCATACCGCAAGATAGGTGATTCTATCTTGTTCCTGGAGAAAGCAC CGAAGAATTTGTTTGATGGTTCAGCAGCTCCACCCACACTTGCTCCAGAGACTCGGGGCAAGGATCAAGGTTTCT CAACTGCAGACACATTTGCCGCAGATGAACCTGATGACAGCGTAGCAACTACGACACTCTTCGTAAAAAACCTGA ATTTCTCGACCACAAATGAGAAGTTCCTGGAAGTGTTTCGATCTCTGGATGGCTTTATCACTGGTCGCATCAAGA CCAAACCTGATCCCAAGCGACCAGGGCAGACCCTCAGCATGGGATTCGGCTTTGCGGATTTCAAAACCAAGGGTC AAGCCCAGGCTGCTCTTTCAGCTATGAACGGCTACAAGTTGGATCAGCACGAGCTTCTCATCCGCGCATCCCATA AAGGCAAGGATGCCGCCGAGGAGCGGAGGCGCGAAGATACCGCGAAGAAGGTTGCAGCGCGGAGAACCAAAATCA TCATCAAGAACTTGCCGTTCCAGGCCACGAAGAAGGACATCAGATCTCTCTTCGGGGCATATGGACAACTTCGGT CTGTGCGTGTTCCCCAGAAGTTCGATCATACTGCTCGTGGTTTCGGTTTTGCAGACTTTGTAAGCGCTCGCGAAG CAGAAAATGCCATGGACGCGTTGAAAAACACGCATCTCCTGGGGAGACGATTGGTTTTGGAGTTCGTGAACGAGG AGGCCGTCGATCCCGAGGAGGAGCTCGCGCGCCTAGAGAAGAAGGTAGGAGAGCAGATGGACAGGGTCAAACTTC AACAGCTTACTACTGGCGCCGGGCGCAAGAAATTTACTGTAGGAGGGCAGGAGGAAGAGTGA |