Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280

General Properties

Protein ID	Pro_DTO377G3_2|g6133.t1
Gene name
Location	scaffold_16:54683..57595
Strand	+
Gene length (bp)	2912
Transcript length (bp)	2508
Coding sequence length (bp)	2508
Protein length (aa)	836

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6.2E-10	6	66
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	5.7E-18	314	384
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6.7E-10	497	558
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6.4E-11	610	684
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	3.5E-15	715	783
PF13893	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6.9E-02	726	803

GO

GO Term	Description	Terminal node
GO:0003676	nucleic acid binding	Yes
GO:0097159	organic cyclic compound binding	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No
GO:0003674	molecular_function	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 34	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2|g6133.t1 MESTRVFVGGLPPTCSNDQLKKHFATRFQVTDAHVLPKRRMGFVGFKSHEAALQAVKHFNKTYMKMSKIAVDIAR PIDSNDAEDAHPTRRRDATNDNDASLDNNLKRKRDGENKSQDPKLQEYLSLMGSSSKTRTWANDDDMIKPSVDTV PVINQPAQEEEQIQDLPSHPKKAKTEKPSTVATPEQPEPMVIDKIEEQEAQETPEQDNSAEPEEETRPVSDADWL RSKTSRLLGLLDEEEQDEFDQHKAAAPTTAPIKAHSPPSSSGDESPQRDEESRTAAIEKIAPNTTDVDSITEATP EDPNIDLIRKSARLFLRNLAYDTTESDLQPIFERFGKIEEIHVAFDTRSTTSKGFAYVQYSHADAAIEAYQTLDG KHFQGRLLHILPASAKKTYKIDEYELSKLPLKKQREIKRKQNASGSSFSWNSLYMNADAVMSSVASRLGVSKSEL LDPTSSEAAVKQAHAETHVIQETKAYFASNGVNIDAFKQRERGNTAILVKNFSYGVTSAELRSLFDPYGKIIRLL MPPSGTIAIVQFAQPDEAQKAFKGMAYRKIGDSILFLEKAPKNLFDGSAAPPTLAPETRGKDQGFSTADTFAADE PDDSVATTTLFVKNLNFSTTNEKFLEVFRSLDGFITGRIKTKPDPKRPGQTLSMGFGFADFKTKGQAQAALSAMN GYKLDQHELLIRASHKGKDAAEERRREDTAKKVAARRTKIIIKNLPFQATKKDIRSLFGAYGQLRSVRVPQKFDH TARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFVNEEAVDPEEELARLEKKVGEQMDRVKLQQLTTGAGRK KFTVGGQEEE*
Coding	>Pro_DTO377G3_2|g6133.t1 ATGGAGAGCACTAGAGTGTTCGTGGGTGGTCTCCCACCGACATGCTCTAATGATCAGCTAAAGAAACATTTTGCA ACTCGCTTTCAAGTCACCGATGCTCATGTCCTACCTAAACGTAGGATGGGGTTCGTCGGCTTCAAAAGCCATGAA GCAGCCCTGCAAGCTGTGAAGCACTTCAACAAGACATACATGAAGATGTCGAAGATCGCTGTAGACATCGCTCGT CCGATTGACTCAAATGACGCTGAGGATGCCCACCCCACACGACGACGTGATGCCACGAATGATAATGATGCATCG TTGGATAACAACCTCAAGCGCAAGAGGGACGGCGAGAACAAATCACAGGACCCTAAGCTACAAGAGTACCTCTCT CTGATGGGATCATCATCGAAGACTCGGACATGGGCCAACGATGATGATATGATCAAGCCGTCAGTGGACACGGTT CCCGTTATTAACCAACCCGCGCAGGAAGAAGAGCAGATTCAGGACCTGCCTTCACACCCAAAAAAGGCAAAGACA GAAAAACCTTCCACGGTAGCAACGCCTGAGCAGCCTGAGCCCATGGTAATTGACAAGATTGAAGAACAGGAGGCT CAAGAAACACCAGAACAGGACAACTCTGCGGAGCCTGAAGAGGAGACTAGACCTGTATCTGATGCAGATTGGCTA CGGTCAAAGACGAGTCGTTTGTTGGGCCTTCTCGATGAGGAAGAACAAGATGAGTTTGATCAACACAAGGCCGCC GCACCGACTACTGCGCCGATCAAAGCTCATTCACCACCTTCCTCGTCTGGCGATGAGTCGCCTCAGCGTGACGAA GAATCGCGCACTGCGGCCATTGAGAAAATTGCGCCCAACACGACTGACGTTGACAGCATCACCGAGGCAACGCCG GAAGATCCGAATATCGATCTTATTCGGAAATCGGCCCGTTTATTCCTCCGGAATCTTGCCTATGACACCACGGAA TCTGATCTACAACCGATTTTTGAACGCTTTGGAAAGATTGAGGAGATTCACGTTGCTTTTGACACACGCTCCACA ACTAGTAAAGGCTTTGCTTATGTGCAATACTCGCATGCTGATGCGGCCATTGAGGCCTACCAGACCCTTGATGGC AAGCATTTCCAGGGTCGTCTGCTCCACATCTTGCCTGCTTCTGCGAAAAAGACCTACAAGATTGACGAATACGAA TTGTCAAAGCTTCCTCTGAAGAAGCAGAGGGAGATCAAGCGAAAACAAAACGCCTCTGGATCGTCATTTAGTTGG AACTCCCTATACATGAATGCCGATGCTGTGATGTCATCAGTGGCCTCAAGGCTCGGAGTCTCCAAATCTGAACTG CTTGATCCCACTTCTTCAGAAGCCGCCGTCAAGCAAGCACATGCTGAAACGCATGTGATTCAAGAAACTAAAGCC TACTTTGCTTCGAATGGAGTAAATATTGATGCTTTCAAGCAGCGCGAACGTGGGAACACGGCTATTTTGGTCAAG AACTTCTCATATGGTGTCACGTCGGCAGAGCTCAGGAGTCTGTTCGATCCATATGGCAAGATTATCCGACTCTTG ATGCCGCCAAGTGGCACTATTGCTATCGTGCAATTTGCGCAGCCTGACGAGGCCCAGAAGGCTTTCAAGGGCATG GCATACCGCAAGATAGGTGATTCTATCTTGTTCCTGGAGAAAGCACCGAAGAATTTGTTTGATGGTTCAGCAGCT CCACCCACACTTGCTCCAGAGACTCGGGGCAAGGATCAAGGTTTCTCAACTGCAGACACATTTGCCGCAGATGAA CCTGATGACAGCGTAGCAACTACGACACTCTTCGTAAAAAACCTGAATTTCTCGACCACAAATGAGAAGTTCCTG GAAGTGTTTCGATCTCTGGATGGCTTTATCACTGGTCGCATCAAGACCAAACCTGATCCCAAGCGACCAGGGCAG ACCCTCAGCATGGGATTCGGCTTTGCGGATTTCAAAACCAAGGGTCAAGCCCAGGCTGCTCTTTCAGCTATGAAC GGCTACAAGTTGGATCAGCACGAGCTTCTCATCCGCGCATCCCATAAAGGCAAGGATGCCGCCGAGGAGCGGAGG CGCGAAGATACCGCGAAGAAGGTTGCAGCGCGGAGAACCAAAATCATCATCAAGAACTTGCCGTTCCAGGCCACG AAGAAGGACATCAGATCTCTCTTCGGGGCATATGGACAACTTCGGTCTGTGCGTGTTCCCCAGAAGTTCGATCAT ACTGCTCGTGGTTTCGGTTTTGCAGACTTTGTAAGCGCTCGCGAAGCAGAAAATGCCATGGACGCGTTGAAAAAC ACGCATCTCCTGGGGAGACGATTGGTTTTGGAGTTCGTGAACGAGGAGGCCGTCGATCCCGAGGAGGAGCTCGCG CGCCTAGAGAAGAAGGTAGGAGAGCAGATGGACAGGGTCAAACTTCAACAGCTTACTACTGGCGCCGGGCGCAAG AAATTTACTGTAGGAGGGCAGGAGGAAGAGTGA
Transcript	>Pro_DTO377G3_2|g6133.t1 ATGGAGAGCACTAGAGTGTTCGTGGGTGGTCTCCCACCGACATGCTCTAATGATCAGCTAAAGAAACATTTTGCA ACTCGCTTTCAAGTCACCGATGCTCATGTCCTACCTAAACGTAGGATGGGGTTCGTCGGCTTCAAAAGCCATGAA GCAGCCCTGCAAGCTGTGAAGCACTTCAACAAGACATACATGAAGATGTCGAAGATCGCTGTAGACATCGCTCGT CCGATTGACTCAAATGACGCTGAGGATGCCCACCCCACACGACGACGTGATGCCACGAATGATAATGATGCATCG TTGGATAACAACCTCAAGCGCAAGAGGGACGGCGAGAACAAATCACAGGACCCTAAGCTACAAGAGTACCTCTCT CTGATGGGATCATCATCGAAGACTCGGACATGGGCCAACGATGATGATATGATCAAGCCGTCAGTGGACACGGTT CCCGTTATTAACCAACCCGCGCAGGAAGAAGAGCAGATTCAGGACCTGCCTTCACACCCAAAAAAGGCAAAGACA GAAAAACCTTCCACGGTAGCAACGCCTGAGCAGCCTGAGCCCATGGTAATTGACAAGATTGAAGAACAGGAGGCT CAAGAAACACCAGAACAGGACAACTCTGCGGAGCCTGAAGAGGAGACTAGACCTGTATCTGATGCAGATTGGCTA CGGTCAAAGACGAGTCGTTTGTTGGGCCTTCTCGATGAGGAAGAACAAGATGAGTTTGATCAACACAAGGCCGCC GCACCGACTACTGCGCCGATCAAAGCTCATTCACCACCTTCCTCGTCTGGCGATGAGTCGCCTCAGCGTGACGAA GAATCGCGCACTGCGGCCATTGAGAAAATTGCGCCCAACACGACTGACGTTGACAGCATCACCGAGGCAACGCCG GAAGATCCGAATATCGATCTTATTCGGAAATCGGCCCGTTTATTCCTCCGGAATCTTGCCTATGACACCACGGAA TCTGATCTACAACCGATTTTTGAACGCTTTGGAAAGATTGAGGAGATTCACGTTGCTTTTGACACACGCTCCACA ACTAGTAAAGGCTTTGCTTATGTGCAATACTCGCATGCTGATGCGGCCATTGAGGCCTACCAGACCCTTGATGGC AAGCATTTCCAGGGTCGTCTGCTCCACATCTTGCCTGCTTCTGCGAAAAAGACCTACAAGATTGACGAATACGAA TTGTCAAAGCTTCCTCTGAAGAAGCAGAGGGAGATCAAGCGAAAACAAAACGCCTCTGGATCGTCATTTAGTTGG AACTCCCTATACATGAATGCCGATGCTGTGATGTCATCAGTGGCCTCAAGGCTCGGAGTCTCCAAATCTGAACTG CTTGATCCCACTTCTTCAGAAGCCGCCGTCAAGCAAGCACATGCTGAAACGCATGTGATTCAAGAAACTAAAGCC TACTTTGCTTCGAATGGAGTAAATATTGATGCTTTCAAGCAGCGCGAACGTGGGAACACGGCTATTTTGGTCAAG AACTTCTCATATGGTGTCACGTCGGCAGAGCTCAGGAGTCTGTTCGATCCATATGGCAAGATTATCCGACTCTTG ATGCCGCCAAGTGGCACTATTGCTATCGTGCAATTTGCGCAGCCTGACGAGGCCCAGAAGGCTTTCAAGGGCATG GCATACCGCAAGATAGGTGATTCTATCTTGTTCCTGGAGAAAGCACCGAAGAATTTGTTTGATGGTTCAGCAGCT CCACCCACACTTGCTCCAGAGACTCGGGGCAAGGATCAAGGTTTCTCAACTGCAGACACATTTGCCGCAGATGAA CCTGATGACAGCGTAGCAACTACGACACTCTTCGTAAAAAACCTGAATTTCTCGACCACAAATGAGAAGTTCCTG GAAGTGTTTCGATCTCTGGATGGCTTTATCACTGGTCGCATCAAGACCAAACCTGATCCCAAGCGACCAGGGCAG ACCCTCAGCATGGGATTCGGCTTTGCGGATTTCAAAACCAAGGGTCAAGCCCAGGCTGCTCTTTCAGCTATGAAC GGCTACAAGTTGGATCAGCACGAGCTTCTCATCCGCGCATCCCATAAAGGCAAGGATGCCGCCGAGGAGCGGAGG CGCGAAGATACCGCGAAGAAGGTTGCAGCGCGGAGAACCAAAATCATCATCAAGAACTTGCCGTTCCAGGCCACG AAGAAGGACATCAGATCTCTCTTCGGGGCATATGGACAACTTCGGTCTGTGCGTGTTCCCCAGAAGTTCGATCAT ACTGCTCGTGGTTTCGGTTTTGCAGACTTTGTAAGCGCTCGCGAAGCAGAAAATGCCATGGACGCGTTGAAAAAC ACGCATCTCCTGGGGAGACGATTGGTTTTGGAGTTCGTGAACGAGGAGGCCGTCGATCCCGAGGAGGAGCTCGCG CGCCTAGAGAAGAAGGTAGGAGAGCAGATGGACAGGGTCAAACTTCAACAGCTTACTACTGGCGCCGGGCGCAAG AAATTTACTGTAGGAGGGCAGGAGGAAGAGTGA
Gene	>Pro_DTO377G3_2|g6133.t1 ATGGAGAGCACTAGAGTGTTCGTGGGTGGTCTCCCACCGACATGCTCTAATGATCAGCTAAAGAAACATTTTGCA ACTCGCTTTCAAGTCACCGATGCTCATGTCCTACCTAAACGTAGGATGGGGTTCGTCGGCTTCAAAAGCCATGAA GCAGCCCTGCAAGCTGTGAAGCACTTCAACAAGACATACATGAAGATGTCGAAGATCGCTGTAGACATCGCTCGT CCGGTATGTCGATTCTCAGCTCTTTTTGCTTCAGCCACCCTCCTTTCGCCTGTGCACGCTGACCAATTAAGGTGG TCTTGAGACTGACCCGTATTATTGCAGATTGACTCAAATGACGCTGAGGATGCCCACCCCACACGACGACGTGAT GCCACGAATGATAATGATGCATCGTTGGATAACAACCTCAAGCGCAAGAGGGACGGCGAGAACAAATCACAGGAC CCTAAGCTACAAGAGTACCTCTCTCTGATGGGATCATCATCGAAGACTCGGACATGGGCCAACGATGATGATATG ATCAAGCCGTCAGTGGACACGGTTCCCGTTATTAACCAACCCGCGCAGGAAGAAGAGCAGATTCAGGACCTGCCT TCACACCCAAAAAAGGCAAAGACAGAAAAACCTTCCACGGTAGCAACGCCTGAGCAGCCTGAGCCCATGGTAATT GACAAGATTGAAGAACAGGAGGCTCAAGAAACACCAGAACAGGACAACTCTGCGGAGCCTGAAGAGGAGACTAGA CCTGTATCTGATGCAGATTGGCTACGGTCAAAGACGAGTCGTTTGTTGGGCCTTCTCGATGAGGAAGAACAAGAT GAGTTTGATCAACACAAGGCCGCCGCACCGACTACTGCGCCGATCAAAGCTCATTCACCACCTTCCTCGTCTGGC GATGAGTCGCCTCAGCGTGACGAAGAATCGCGCACTGCGGCCATTGAGAAAATTGCGCCCAACACGACTGACGTT GACAGCATCACCGAGGCAACGCCGGAAGATCCGAATATCGATCTTATTCGGAAATCGGCCCGTTTATTCCTCCGG AATCTTGCCTATGACACCACGGAATCTGATCTACAACCGATTTTTGAACGCTTTGGAAAGATTGAGGAGGTTAGT ACTTACCTTTTTTTGCTTTCTCAACCCTGCCCCGCCTTTCCCCCAGTGCGGCAGACTAGCCTGTTTGTTACGAGT GCTCGTATGATGATTTTCCCGATAGGGACATCCGATGCAAATTGCAAATGATGTTACCAGGACAAGATATTTTAG TAGATGCTTCTTGACTATCTGAAAGAGCCAACTCAACCCACTTTTCCACATTTACACATTATATTCAATGACCTT GAGTACTAATTGAATATAGATTCACGTTGCTTTTGACACACGCTCCACAACTAGTAAAGGCTTTGCTTATGTGCA ATACTCGCATGCTGATGCGGCCATTGAGGCCTACCAGACCCTTGATGGCAAGCATTTCCAGGGTCGTCTGCTCCA CATCTTGCCTGCTTCTGCGAAAAAGACCTACAAGATTGACGAATACGAATTGTCAAAGCTTCCTCTGAAGAAGCA GAGGGAGATCAAGCGAAAACAAAACGCCTCTGGATCGTCATTTAGTTGGAACTCCCTATACATGAATGTGAGTTT ACCTCTTACCACCACCAATCAAAAGGTTGAGACTAATTTCGCTACAGGCCGATGCTGTGATGTCATCAGTGGCCT CAAGGCTCGGAGTCTCCAAATCTGAACTGCTTGATCCCACTTCTTCAGAAGCCGCCGTCAAGCAAGCACATGCTG AAACGCATGTGATTCAAGAAACTAAAGCCTACTTTGCTTCGAATGGAGTAAATATTGATGCTTTCAAGCAGCGCG AACGTGGGAACACGGCTATTTTGGTCAAGAACTTCTCATATGGTGTCACGTCGGCAGAGCTCAGGAGTCTGTTCG ATCCATATGGCAAGATTATCCGACTCTTGATGCCGCCAAGTGGCACTATTGCTATCGTGCAATTTGCGCAGCCTG ACGAGGCCCAGAAGGCTTTCAAGGGCATGGCATACCGCAAGATAGGTGATTCTATCTTGTTCCTGGAGAAAGCAC CGAAGAATTTGTTTGATGGTTCAGCAGCTCCACCCACACTTGCTCCAGAGACTCGGGGCAAGGATCAAGGTTTCT CAACTGCAGACACATTTGCCGCAGATGAACCTGATGACAGCGTAGCAACTACGACACTCTTCGTAAAAAACCTGA ATTTCTCGACCACAAATGAGAAGTTCCTGGAAGTGTTTCGATCTCTGGATGGCTTTATCACTGGTCGCATCAAGA CCAAACCTGATCCCAAGCGACCAGGGCAGACCCTCAGCATGGGATTCGGCTTTGCGGATTTCAAAACCAAGGGTC AAGCCCAGGCTGCTCTTTCAGCTATGAACGGCTACAAGTTGGATCAGCACGAGCTTCTCATCCGCGCATCCCATA AAGGCAAGGATGCCGCCGAGGAGCGGAGGCGCGAAGATACCGCGAAGAAGGTTGCAGCGCGGAGAACCAAAATCA TCATCAAGAACTTGCCGTTCCAGGCCACGAAGAAGGACATCAGATCTCTCTTCGGGGCATATGGACAACTTCGGT CTGTGCGTGTTCCCCAGAAGTTCGATCATACTGCTCGTGGTTTCGGTTTTGCAGACTTTGTAAGCGCTCGCGAAG CAGAAAATGCCATGGACGCGTTGAAAAACACGCATCTCCTGGGGAGACGATTGGTTTTGGAGTTCGTGAACGAGG AGGCCGTCGATCCCGAGGAGGAGCTCGCGCGCCTAGAGAAGAAGGTAGGAGAGCAGATGGACAGGGTCAAACTTC AACAGCTTACTACTGGCGCCGGGCGCAAGAAATTTACTGTAGGAGGGCAGGAGGAAGAGTGA