© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g613.t1 |
| Gene name | |
| Location | scaffold_01:1576569..1577461 |
| Strand | + |
| Gene length (bp) | 892 |
| Transcript length (bp) | 717 |
| Coding sequence length (bp) | 717 |
| Protein length (aa) | 239 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 1.9E-12 | 152 | 208 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 93 | 115 | 22 |
| 2 | 127 | 149 | 22 |
| 3 | 192 | 211 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g613.t1 MSVKFQEETVRTVTGGGKSEDLAHRVGERLTGGKTAAGYLQAYLLQLQKNPLRTKMLTSGVLSGLQELLASWIAH DVGKHGHYFSSRIPKMSLYGMFISAPLGHVLIGILQKIFAGRTSLKAKILQILVSNLIISPIQNSVYLTSMAIIA GARTIHQVRATVKAGFMPVMKVSWITSPLCLAFAQKFLPEHTWVPFFNVVGFFIGTYVNTHTKKKRLEALRKRYD QRRDPSYEKRDFP* |
| Coding | >Pro_DTO377G3_2|g613.t1 ATGTCCGTCAAGTTCCAAGAGGAGACCGTCCGCACCGTCACGGGCGGCGGCAAGTCTGAAGACCTAGCGCATCGC GTCGGTGAGCGATTGACCGGTGGAAAGACAGCGGCTGGGTATCTCCAGGCATACCTCCTTCAGCTCCAGAAGAAC CCTCTGCGCACGAAGATGCTCACCTCTGGTGTGCTCTCCGGTCTGCAGGAACTGCTAGCTTCGTGGATCGCCCAC GATGTCGGCAAGCACGGCCACTACTTCAGCTCGCGCATCCCCAAGATGTCGCTGTACGGAATGTTCATCAGCGCG CCCCTCGGCCACGTTCTCATCGGGATCCTGCAGAAGATTTTCGCCGGCCGCACAAGTCTCAAGGCCAAGATCCTG CAGATTCTCGTTAGCAATCTGATTATCTCCCCCATCCAGAACAGTGTCTACCTGACCTCCATGGCTATTATCGCC GGTGCGCGCACCATCCACCAGGTTCGCGCTACCGTCAAGGCTGGCTTCATGCCCGTCATGAAGGTCAGCTGGATC ACCTCGCCCCTGTGTTTGGCCTTCGCTCAGAAGTTCCTCCCTGAGCACACCTGGGTGCCCTTCTTCAACGTTGTT GGATTCTTCATTGGAACCTATGTCAACACCCACACCAAGAAGAAGCGTCTGGAAGCTCTCCGGAAGCGTTACGAC CAGCGTCGCGACCCCAGCTACGAGAAGCGCGACTTCCCTTAA |
| Transcript | >Pro_DTO377G3_2|g613.t1 ATGTCCGTCAAGTTCCAAGAGGAGACCGTCCGCACCGTCACGGGCGGCGGCAAGTCTGAAGACCTAGCGCATCGC GTCGGTGAGCGATTGACCGGTGGAAAGACAGCGGCTGGGTATCTCCAGGCATACCTCCTTCAGCTCCAGAAGAAC CCTCTGCGCACGAAGATGCTCACCTCTGGTGTGCTCTCCGGTCTGCAGGAACTGCTAGCTTCGTGGATCGCCCAC GATGTCGGCAAGCACGGCCACTACTTCAGCTCGCGCATCCCCAAGATGTCGCTGTACGGAATGTTCATCAGCGCG CCCCTCGGCCACGTTCTCATCGGGATCCTGCAGAAGATTTTCGCCGGCCGCACAAGTCTCAAGGCCAAGATCCTG CAGATTCTCGTTAGCAATCTGATTATCTCCCCCATCCAGAACAGTGTCTACCTGACCTCCATGGCTATTATCGCC GGTGCGCGCACCATCCACCAGGTTCGCGCTACCGTCAAGGCTGGCTTCATGCCCGTCATGAAGGTCAGCTGGATC ACCTCGCCCCTGTGTTTGGCCTTCGCTCAGAAGTTCCTCCCTGAGCACACCTGGGTGCCCTTCTTCAACGTTGTT GGATTCTTCATTGGAACCTATGTCAACACCCACACCAAGAAGAAGCGTCTGGAAGCTCTCCGGAAGCGTTACGAC CAGCGTCGCGACCCCAGCTACGAGAAGCGCGACTTCCCTTAA |
| Gene | >Pro_DTO377G3_2|g613.t1 ATGTCCGTCAAGTTCCAAGAGGAGACCGTCCGCACCGTCACGGGCGGCGGCAAGTCTGAAGACCTAGCGCATCGC GTCGGTGAGCGATTGACCGGTGGAAAGACAGCGGCTGGGTATCTCCAGGTATGCAGCGCCTACCCCTCCAATAAC ATCGAGCCAACACTGATCCGGGGAATGGATCGTCAATAGGCATACCTCCTTCAGCTCCAGAAGAACCCTCTGCGC ACGAAGATGCTCACCTCTGGTGTGCTCTCCGGTCTGCAGGAACTGCTAGCTTCGTGGATCGCCCACGATGTCGGC AAGCACGGCCACTACTTCAGCTCGCGCATCCCCAAGATGTCGCTGTACGGAATGTTCATCAGCGCGCCCCTCGGC CACGTTCTCATCGGGATCCTGCAGAAGATTTTCGCCGGCCGCACAAGTCTCAAGGCCAAGATCCTGCAGATTCTC GTTAGCAATCTGATTGTACGTCGTCGCTGCGATCACCTGTCCTGAGATTCGCTAATATTCTCCCGTTCCCCAGAT CTCCCCCATCCAGAACAGTGTCTACCTGACCTCCATGGCTATTATCGCCGGTGCGCGCACCATCCACCAGGTTCG CGCTACCGTCAAGGCTGGCTTCATGCCCGTCATGAAGGTCAGCTGGATCACCTCGCCCCTGTGTTTGGCCTTCGC TCAGAAGTTCCTCCCTGAGCACACCTGGGTGCCCTTCTTCAACGTTGTTGGATTCTTCATTGGAACCTATGTCAA CACCCACACCAAGAAGAAGCGTCTGGAAGCTCTCCGGAAGGTATGATTTTATTTCTTGGAATTTGCGACTTGATT GCTAACGACTCGGCAGCGTTACGACCAGCGTCGCGACCCCAGCTACGAGAAGCGCGACTTCCCTTAA |