© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6118.t1 |
| Gene name | |
| Location | scaffold_16:14600..15830 |
| Strand | - |
| Gene length (bp) | 1230 |
| Transcript length (bp) | 570 |
| Coding sequence length (bp) | 570 |
| Protein length (aa) | 190 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00025 | Arf | ADP-ribosylation factor family | 3.9E-65 | 7 | 189 |
| PF09439 | SRPRB | Signal recognition particle receptor beta subunit | 4.1E-08 | 20 | 146 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 7.4E-07 | 23 | 129 |
| PF08477 | Roc | Ras of Complex, Roc, domain of DAPkinase | 2.3E-06 | 22 | 132 |
| PF00071 | Ras | Ras family | 3.1E-05 | 22 | 138 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 176.27 | 105.07 | 247.47 |
| 5d_25C | Five days - 25 degrees Celsius | 180.46 | 107.19 | 253.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 184.98 | 110.71 | 259.24 |
| 10d_25C | Ten days - 25 degrees Celsius | 249.96 | 152.41 | 347.51 |
| 7d_15C | Seven days - 15 degrees Celsius | 156.90 | 88.14 | 225.66 |
| 7d_30C | Seven days - 30 degrees Celsius | 207.85 | 124.46 | 291.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.946934 | no |
| 3d_25C | 7d_25C | 0.886201 | no |
| 3d_25C | 7d_15C | 0.700692 | no |
| 3d_25C | 7d_30C | 0.550912 | no |
| 3d_25C | 10d_25C | 0.117102 | no |
| 5d_25C | 7d_25C | 0.945115 | no |
| 5d_25C | 7d_15C | 0.632639 | no |
| 5d_25C | 7d_30C | 0.616461 | no |
| 5d_25C | 10d_25C | 0.145347 | no |
| 7d_25C | 7d_15C | 0.557530 | no |
| 7d_25C | 7d_30C | 0.688814 | no |
| 7d_25C | 10d_25C | 0.190648 | no |
| 7d_15C | 7d_30C | 0.265752 | no |
| 7d_15C | 10d_25C | 0.036077 | yes |
| 7d_30C | 10d_25C | 0.475083 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6118.t1 MWIVNWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQ QARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQ TTGKGKVPLEGIRPIEVFMCSVVMRQGYGEGIRWLSQYV* |
| Coding | >Pro_DTO377G3_2|g6118.t1 ATGTGGATCGTTAACTGGTTTTACGATATCTTGGCCTCGCTGGGTCTCCTCAATAAGCACGCCAAGCTTCTGTTC CTCGGTCTGGATAATGCCGGAAAAACGACGCTGCTGCACATGTTGAAGAACGACCGTGTCGCCGTCCTGCAACCT ACCGCACACCCAACCTCAGAGGAGTTGGCTATCGGTAACAACCGCTTCACGACTTTCGATCTCGGTGGTCACCAG CAGGCTCGCCGTCTCTGGAAGGACTACTTCCCCGAAGTGAGCGGAATCGTCTTCCTGGTTGACGCCAAGGATTAC GAGCGCTTCCCCGAATCCAAGGCTGAGCTCGACGCTCTTCTCGCCATGGAGGAGCTCTCCAAGGTTCCCTTCCTC GTTCTTGGAAACAAGATCGATCACCCCGATGCTGTCAGCGAGGATGAGCTGCGCCACCAGCTCGGTCTCTACCAG ACCACTGGTAAGGGCAAGGTCCCTCTCGAGGGTATCCGCCCTATCGAGGTGTTCATGTGCAGTGTTGTTATGCGA CAGGGATACGGCGAGGGAATCAGATGGTTGTCCCAATACGTTTAA |
| Transcript | >Pro_DTO377G3_2|g6118.t1 ATGTGGATCGTTAACTGGTTTTACGATATCTTGGCCTCGCTGGGTCTCCTCAATAAGCACGCCAAGCTTCTGTTC CTCGGTCTGGATAATGCCGGAAAAACGACGCTGCTGCACATGTTGAAGAACGACCGTGTCGCCGTCCTGCAACCT ACCGCACACCCAACCTCAGAGGAGTTGGCTATCGGTAACAACCGCTTCACGACTTTCGATCTCGGTGGTCACCAG CAGGCTCGCCGTCTCTGGAAGGACTACTTCCCCGAAGTGAGCGGAATCGTCTTCCTGGTTGACGCCAAGGATTAC GAGCGCTTCCCCGAATCCAAGGCTGAGCTCGACGCTCTTCTCGCCATGGAGGAGCTCTCCAAGGTTCCCTTCCTC GTTCTTGGAAACAAGATCGATCACCCCGATGCTGTCAGCGAGGATGAGCTGCGCCACCAGCTCGGTCTCTACCAG ACCACTGGTAAGGGCAAGGTCCCTCTCGAGGGTATCCGCCCTATCGAGGTGTTCATGTGCAGTGTTGTTATGCGA CAGGGATACGGCGAGGGAATCAGATGGTTGTCCCAATACGTTTAA |
| Gene | >Pro_DTO377G3_2|g6118.t1 ATGTGGATCGTTAACTGGTGTAAGTACCCTCCCGATACCACTCCCGATCACCTGCAGTCACCGACGTCCGGGGCC GATCTCGAACACAGGGGAAGAGTGAACGAGATACCTCCCCGGACAGTACAGTTGCACTGGAGCTAAGCATGTCTT CATTCCAACTCTGATGTCGAGTCATGCGACGGCTGTGCCGCGGTACCGGCTGCTTGTGATCGAGGCGTGCGTCTT TAGGTGCAAGGTGCAATTTGCTGATTTCGCTTCTTTCCCCTATAGTTTACGATATCTTGGCCTCGCTGGGTCTCC TCAATAAGCACGCCAAGCTTCTGTTCCTCGGTCTGGATAATGCCGGAAAAACGACGCTGCTGCACATGTTGAAGG TGAGTTGAGCGTTGGTGTTGAGTTTGGGAAGAGAAGATCTAGTCCTTTGGTGTTCAATTCCGCTGGCTACAAGTC CCGAGTCTGGTGGCGCTGGATTTCTGTACAGATCAGGGAGCTTGGATATAGCACGGGAGAGATGATATAAGAACT GGACGTTGTGTGGGGCTCGTTTGCTGACAGGACATTCAACAGAACGACCGTGTCGCCGTCCTGCAACCTACCGCA CACCCAACCTCAGAGGAGTTGGCTATCGGTAACAACCGCTTCACGACTTTCGATCTCGGTGGTCACCAGCAGGGT GAGTAATGCTCTTGATGGGGAATTCTGATGTTGCGCAAGCATACTGCTAAGCAACACGAAACCCCCCACAATGAA TCATGGGACTGAACATAACTAACGGACCTACCTTTCCCCTCAGCTCGCCGTCTCTGGAAGGACTACTTCCCCGAA GTGAGCGGAATCGTCTTCCTGGTTGACGCCAAGGATTACGAGCGCTTCCCCGAATCCAAGGCTGAGCTCGACGCT CTTCTCGCCATGGAGGAGCTCTCCAAGGTTCCCTTCCTCGTTCTTGGAAACAAGATCGATCACCCCGATGCTGTC AGCGAGGATGAGCTGCGCCACCAGCTCGGTCTCTACCAGACCACTGGTAAGGGCAAGGTCCCTCTCGAGGGTATC CGCCCTATCGAGGTGTTCATGTGCAGTGTTGTTATGCGACAGGGTGAGTTTCGTCCAGTCCCAACAGTGAAAACT GGAGCCGTACTGGCTAAGCAGACATTGAAACAATCATAACTAACCTTTATCTTTTCCCCGACAGGATACGGCGAG GGAATCAGATGGTTGTCCCAATACGTTTAA |