© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6115.t1 |
| Gene name | |
| Location | scaffold_16:1116..3316 |
| Strand | - |
| Gene length (bp) | 2200 |
| Transcript length (bp) | 2151 |
| Coding sequence length (bp) | 2151 |
| Protein length (aa) | 717 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11815 | DUF3336 | Domain of unknown function (DUF3336) | 2.4E-50 | 117 | 269 |
| PF01734 | Patatin | Patatin-like phospholipase | 4.2E-16 | 277 | 466 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0004806 | triglyceride lipase activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016298 | lipase activity | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0008152 | metabolic process | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 90 | 112 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 79.71 | 48.62 | 110.79 |
| 5d_25C | Five days - 25 degrees Celsius | 90.52 | 55.07 | 125.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 84.67 | 51.81 | 117.52 |
| 10d_25C | Ten days - 25 degrees Celsius | 100.32 | 60.90 | 139.74 |
| 7d_15C | Seven days - 15 degrees Celsius | 109.95 | 66.47 | 153.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 79.91 | 48.61 | 111.21 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.640206 | no |
| 3d_25C | 7d_25C | 0.846169 | no |
| 3d_25C | 7d_15C | 0.153493 | no |
| 3d_25C | 7d_30C | 0.994324 | no |
| 3d_25C | 10d_25C | 0.333251 | no |
| 5d_25C | 7d_25C | 0.827460 | no |
| 5d_25C | 7d_15C | 0.439512 | no |
| 5d_25C | 7d_30C | 0.649788 | no |
| 5d_25C | 10d_25C | 0.719252 | no |
| 7d_25C | 7d_15C | 0.275260 | no |
| 7d_25C | 7d_30C | 0.855435 | no |
| 7d_25C | 10d_25C | 0.511208 | no |
| 7d_15C | 7d_30C | 0.156378 | no |
| 7d_15C | 10d_25C | 0.757928 | no |
| 7d_30C | 10d_25C | 0.337492 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6115.t1 MTTKKKPAVYDPYDPACLPDYDRDFIQPDELDRFEKALNAPEASPLTAINDWRPINQRVRKNRGRRKTPKRSKDE TREGVLYSVLKWPFLFIVFAWLIVLSFGYALVRVYIVLYEQWVTWRGKRQRLRQELSAQKNYPDWLKAAQALDVH LGTEKWKKTDEYAYYDHLTVNKVVSQLKQLRKKVEWEMENGRVGSSEVPAIEDLQALLEACVKNNFSGVENPRIY SETYSGTKELVQEYIDEVHACIQIILDNKQIDKDAKYELFKHLDTNFGRTALCLSGGATFAYYHFGVVRALLDND VLPEIITGTSGGALVAGLVATRTDDELKQLLVPALAHRIRACHEGLATWIRRWWRTGARFDTMDWARQCAWFCRG STTFREAYERTGRILNVTCVPSDPHSPTILANYLTCPDCVIWSAVLASAAVPGILNPVVLMTKKRDGTLAPYSFG HKWKDGSLRTDIPIKALNLHFNVNFTIVSQVNPHINLFFFSSRGTVGRPVTHRRGRGWRGGFLGTAIEQYIKLDL NKWLRVLRHLELLPRPLGQDWSEIWLQKFSGTVTIWPKTIPSDFIHILSDPTPERLARMIHVGQQSTFSKIQFIQ NRLKVENAIMKGLQESRTGGRALSPILSRRIRNRENEHADSMVERLDENLPERDGSSYKNESRFGDLSDSMSQST GSSRPHTPSSRRGSVIEELRRQSAVFFDDPDYYRDEDAVVI* |
| Coding | >Pro_DTO377G3_2|g6115.t1 ATGACCACTAAGAAGAAACCTGCTGTGTACGACCCTTACGATCCGGCCTGTCTCCCTGACTACGACCGCGACTTC ATTCAGCCAGATGAACTCGACCGATTCGAGAAGGCGCTGAATGCCCCAGAAGCCTCCCCATTGACAGCCATCAAC GACTGGCGCCCAATCAATCAACGAGTCCGCAAGAATCGTGGCCGCCGCAAAACACCAAAGCGAAGCAAGGATGAA ACGAGGGAAGGCGTGCTATATTCTGTTTTGAAATGGCCCTTCCTGTTCATTGTATTCGCGTGGCTCATAGTACTG AGCTTTGGCTATGCTCTGGTGCGTGTCTACATAGTATTGTATGAACAGTGGGTGACATGGCGGGGGAAAAGGCAA AGGCTGCGTCAGGAACTATCTGCACAGAAAAACTATCCGGACTGGCTGAAAGCGGCTCAAGCATTGGACGTCCAT CTCGGAACCGAAAAGTGGAAAAAGACAGACGAATACGCTTATTACGACCATCTCACTGTCAACAAGGTGGTATCG CAGCTGAAGCAGCTGAGGAAGAAGGTGGAATGGGAAATGGAGAATGGTCGGGTCGGCTCTAGCGAGGTACCTGCT ATTGAAGATCTTCAAGCACTTTTAGAGGCTTGCGTCAAGAACAACTTTTCCGGTGTGGAAAATCCTCGAATATAT AGCGAGACATACTCGGGAACAAAGGAGCTGGTTCAGGAATACATCGACGAGGTGCACGCATGCATACAGATCATT TTGGACAACAAACAGATTGACAAGGATGCCAAGTATGAGCTTTTCAAACACCTCGATACAAACTTTGGACGCACC GCTCTTTGTCTTTCGGGTGGTGCTACATTCGCTTACTACCACTTCGGGGTGGTAAGAGCGCTGCTGGATAATGAT GTCCTCCCAGAAATCATAACTGGCACATCAGGCGGAGCACTTGTGGCGGGACTAGTCGCAACTCGGACAGATGAT GAGCTAAAGCAGCTGCTTGTTCCAGCTTTAGCACATCGGATTCGCGCATGCCATGAAGGACTGGCAACTTGGATC CGTCGCTGGTGGCGAACTGGTGCTCGGTTCGATACTATGGACTGGGCTCGACAATGCGCCTGGTTCTGCAGGGGT TCAACGACCTTTCGTGAAGCTTACGAGCGGACCGGGCGTATTTTGAATGTCACCTGCGTGCCCTCAGATCCTCAC TCACCGACTATCCTAGCCAATTATCTGACATGCCCCGACTGTGTCATATGGAGTGCCGTGCTTGCTTCGGCGGCT GTTCCGGGAATTTTAAACCCTGTTGTATTAATGACTAAAAAGCGTGATGGCACTCTCGCGCCTTATTCGTTTGGT CACAAATGGAAGGATGGTAGCCTACGGACTGATATACCTATCAAAGCGTTGAACCTGCATTTCAACGTCAACTTT ACGATTGTATCCCAGGTCAATCCCCACATCAACCTCTTCTTCTTTAGTTCTAGAGGGACAGTAGGGCGACCAGTC ACACACCGCAGGGGCCGTGGCTGGCGCGGGGGCTTCCTCGGCACCGCAATCGAGCAGTACATCAAATTAGACCTC AACAAATGGCTTCGAGTTCTTCGGCATTTAGAGCTCCTCCCACGACCTTTGGGCCAGGATTGGAGCGAGATCTGG TTGCAAAAGTTCAGTGGCACTGTAACTATCTGGCCAAAAACGATCCCCTCCGATTTCATCCACATTCTTTCCGAT CCCACTCCTGAAAGGCTCGCCCGCATGATACATGTCGGCCAGCAGAGTACTTTCTCCAAAATCCAATTTATCCAA AACCGGCTCAAGGTCGAGAATGCGATCATGAAAGGACTCCAAGAATCTAGAACGGGTGGACGTGCGCTCTCCCCG ATCCTGTCCCGTCGAATCCGCAATCGGGAAAATGAACATGCAGACTCTATGGTGGAGCGTTTAGATGAAAATCTC CCCGAGCGCGATGGATCTAGCTACAAGAACGAGTCGCGTTTTGGTGACTTGTCAGATAGCATGTCTCAATCAACC GGCTCATCACGTCCTCATACCCCCAGTTCCCGGCGGGGAAGCGTGATCGAGGAACTACGACGCCAGTCTGCAGTT TTCTTTGACGATCCAGACTACTATCGGGACGAGGATGCCGTGGTCATCTGA |
| Transcript | >Pro_DTO377G3_2|g6115.t1 ATGACCACTAAGAAGAAACCTGCTGTGTACGACCCTTACGATCCGGCCTGTCTCCCTGACTACGACCGCGACTTC ATTCAGCCAGATGAACTCGACCGATTCGAGAAGGCGCTGAATGCCCCAGAAGCCTCCCCATTGACAGCCATCAAC GACTGGCGCCCAATCAATCAACGAGTCCGCAAGAATCGTGGCCGCCGCAAAACACCAAAGCGAAGCAAGGATGAA ACGAGGGAAGGCGTGCTATATTCTGTTTTGAAATGGCCCTTCCTGTTCATTGTATTCGCGTGGCTCATAGTACTG AGCTTTGGCTATGCTCTGGTGCGTGTCTACATAGTATTGTATGAACAGTGGGTGACATGGCGGGGGAAAAGGCAA AGGCTGCGTCAGGAACTATCTGCACAGAAAAACTATCCGGACTGGCTGAAAGCGGCTCAAGCATTGGACGTCCAT CTCGGAACCGAAAAGTGGAAAAAGACAGACGAATACGCTTATTACGACCATCTCACTGTCAACAAGGTGGTATCG CAGCTGAAGCAGCTGAGGAAGAAGGTGGAATGGGAAATGGAGAATGGTCGGGTCGGCTCTAGCGAGGTACCTGCT ATTGAAGATCTTCAAGCACTTTTAGAGGCTTGCGTCAAGAACAACTTTTCCGGTGTGGAAAATCCTCGAATATAT AGCGAGACATACTCGGGAACAAAGGAGCTGGTTCAGGAATACATCGACGAGGTGCACGCATGCATACAGATCATT TTGGACAACAAACAGATTGACAAGGATGCCAAGTATGAGCTTTTCAAACACCTCGATACAAACTTTGGACGCACC GCTCTTTGTCTTTCGGGTGGTGCTACATTCGCTTACTACCACTTCGGGGTGGTAAGAGCGCTGCTGGATAATGAT GTCCTCCCAGAAATCATAACTGGCACATCAGGCGGAGCACTTGTGGCGGGACTAGTCGCAACTCGGACAGATGAT GAGCTAAAGCAGCTGCTTGTTCCAGCTTTAGCACATCGGATTCGCGCATGCCATGAAGGACTGGCAACTTGGATC CGTCGCTGGTGGCGAACTGGTGCTCGGTTCGATACTATGGACTGGGCTCGACAATGCGCCTGGTTCTGCAGGGGT TCAACGACCTTTCGTGAAGCTTACGAGCGGACCGGGCGTATTTTGAATGTCACCTGCGTGCCCTCAGATCCTCAC TCACCGACTATCCTAGCCAATTATCTGACATGCCCCGACTGTGTCATATGGAGTGCCGTGCTTGCTTCGGCGGCT GTTCCGGGAATTTTAAACCCTGTTGTATTAATGACTAAAAAGCGTGATGGCACTCTCGCGCCTTATTCGTTTGGT CACAAATGGAAGGATGGTAGCCTACGGACTGATATACCTATCAAAGCGTTGAACCTGCATTTCAACGTCAACTTT ACGATTGTATCCCAGGTCAATCCCCACATCAACCTCTTCTTCTTTAGTTCTAGAGGGACAGTAGGGCGACCAGTC ACACACCGCAGGGGCCGTGGCTGGCGCGGGGGCTTCCTCGGCACCGCAATCGAGCAGTACATCAAATTAGACCTC AACAAATGGCTTCGAGTTCTTCGGCATTTAGAGCTCCTCCCACGACCTTTGGGCCAGGATTGGAGCGAGATCTGG TTGCAAAAGTTCAGTGGCACTGTAACTATCTGGCCAAAAACGATCCCCTCCGATTTCATCCACATTCTTTCCGAT CCCACTCCTGAAAGGCTCGCCCGCATGATACATGTCGGCCAGCAGAGTACTTTCTCCAAAATCCAATTTATCCAA AACCGGCTCAAGGTCGAGAATGCGATCATGAAAGGACTCCAAGAATCTAGAACGGGTGGACGTGCGCTCTCCCCG ATCCTGTCCCGTCGAATCCGCAATCGGGAAAATGAACATGCAGACTCTATGGTGGAGCGTTTAGATGAAAATCTC CCCGAGCGCGATGGATCTAGCTACAAGAACGAGTCGCGTTTTGGTGACTTGTCAGATAGCATGTCTCAATCAACC GGCTCATCACGTCCTCATACCCCCAGTTCCCGGCGGGGAAGCGTGATCGAGGAACTACGACGCCAGTCTGCAGTT TTCTTTGACGATCCAGACTACTATCGGGACGAGGATGCCGTGGTCATCTGA |
| Gene | >Pro_DTO377G3_2|g6115.t1 ATGACCACTAAGAAGAAACCTGCTGTGTACGACCCTTACGATCCGGCCTGTCTCCCTGACTACGACCGCGACTTC ATTCAGCCAGATGAACTCGACCGATTCGAGAAGGCGCTGAATGCCCCAGAAGCCTCCCCATTGACAGCCATCAAC GACTGGCGCCCAATCAATCAACGAGTCCGCAAGAATCGTGGCCGCCGCAAAACACCAAAGCGAAGCAAGGATGAA ACGAGGGAAGGCGTGCTATATTCTGTTTTGAAATGGCCCTTCCTGTTCATTGTATTCGCGTGGCTCATAGTACTG AGCTTTGGCTATGCTCTGGTGCGTGTCTACATAGTATTGTATGAACAGTGGGTGACATGGCGGGGGAAAAGGCAA AGGCTGCGTCAGGAACTATCTGCACAGAAAAACTATCCGGACTGGCTGAAAGCGGCTCAAGCATTGGACGTCCAT CTCGGAACCGAAAAGTGGAAAAAGACAGACGAATACGCTTATTACGACCATCTCACTGTCAACAAGGTGGTATCG CAGCTGAAGCAGCTGAGGAAGAAGGTGGAATGGGAAATGGAGAATGGTCGGGTCGGCTCTAGCGAGGTACCTGCT ATTGAAGATCTTCAAGCACTTTTAGAGGCTTGCGTCAAGAACAACTTTTCCGGTGTGGAAAATCCTCGAATATAT AGCGAGACATACTCGGGAACAAAGGAGCTGGTTCAGGAATACATCGACGAGGTGCACGCATGCATACAGATCATT TTGGACAACAAACAGATTGACAAGGATGCCAAGTATGAGCTTTTCAAACACCTCGATACAAACTTTGGACGCACC GCTCTTTGTCTTTCGGGTGGTGCTACATTCGCTTACTACCACTTCGGGGTGGTAAGAGCGCTGCTGGATAATGAT GTCCTCCCAGAAATCATAACTGGCACATCAGGCGGAGCACTTGTGGCGGGACTAGTCGCAACTCGGACAGATGAT GAGCTAAAGCAGCTGCTTGTTCCAGCTTTAGCACATCGGATTCGCGCATGCCATGAAGGACTGGCAACTTGGATC CGTCGCTGGTGGCGAACTGGTGCTCGGTTCGATACTATGGACTGGGCTCGACAATGCGCCTGGTTCTGCAGGGGT TCAACGACCTTTCGTGAAGCTTACGAGCGGACCGGGCGTATTTTGAATGTCACCTGCGTGCCCTCAGATCCTCAC TCACCGACTATCCTAGCCAATTATCTGACATGCCCCGACTGTGTCATATGGAGTGCCGTGCTTGCTTCGGCGGCT GTTCCGGGAATTTTAAACCCTGTTGTATTAATGACTAAAAAGCGTGATGGCACTCTCGCGCCTTATTCGTTTGGT CACAAATGGAAGGATGGTAGCCTACGGACTGATATACCTATCAAAGCGTTGAACCTGCATTTCAACGTCAACTTT ACGATTGTATCCCAGGTGAGATTCCTTTCCTACGTTTAAACCTTTGCCACTAACACTACCCTAGGTCAATCCCCA CATCAACCTCTTCTTCTTTAGTTCTAGAGGGACAGTAGGGCGACCAGTCACACACCGCAGGGGCCGTGGCTGGCG CGGGGGCTTCCTCGGCACCGCAATCGAGCAGTACATCAAATTAGACCTCAACAAATGGCTTCGAGTTCTTCGGCA TTTAGAGCTCCTCCCACGACCTTTGGGCCAGGATTGGAGCGAGATCTGGTTGCAAAAGTTCAGTGGCACTGTAAC TATCTGGCCAAAAACGATCCCCTCCGATTTCATCCACATTCTTTCCGATCCCACTCCTGAAAGGCTCGCCCGCAT GATACATGTCGGCCAGCAGAGTACTTTCTCCAAAATCCAATTTATCCAAAACCGGCTCAAGGTCGAGAATGCGAT CATGAAAGGACTCCAAGAATCTAGAACGGGTGGACGTGCGCTCTCCCCGATCCTGTCCCGTCGAATCCGCAATCG GGAAAATGAACATGCAGACTCTATGGTGGAGCGTTTAGATGAAAATCTCCCCGAGCGCGATGGATCTAGCTACAA GAACGAGTCGCGTTTTGGTGACTTGTCAGATAGCATGTCTCAATCAACCGGCTCATCACGTCCTCATACCCCCAG TTCCCGGCGGGGAAGCGTGATCGAGGAACTACGACGCCAGTCTGCAGTTTTCTTTGACGATCCAGACTACTATCG GGACGAGGATGCCGTGGTCATCTGA |