Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6107.t1
Gene name
Locationscaffold_15:609984..610667
Strand-
Gene length (bp)683
Transcript length (bp)567
Coding sequence length (bp)567
Protein length (aa) 189

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.0E-08 27 97

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 74.66 38.27 111.05
5d_25C Five days - 25 degrees Celsius 58.89 28.39 89.39
7d_25C Seven days - 25 degrees Celsius 55.57 26.38 84.77
10d_25C Ten days - 25 degrees Celsius 37.65 15.78 59.52
7d_15C Seven days - 15 degrees Celsius 64.37 31.78 96.96
7d_30C Seven days - 30 degrees Celsius 49.85 23.02 76.67

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.463028 no
3d_25C 7d_25C 0.337067 no
3d_25C 7d_15C 0.673867 no
3d_25C 7d_30C 0.165334 no
3d_25C 10d_25C 0.018838 yes
5d_25C 7d_25C 0.892048 no
5d_25C 7d_15C 0.825786 no
5d_25C 7d_30C 0.662664 no
5d_25C 10d_25C 0.166494 no
7d_25C 7d_15C 0.689634 no
7d_25C 7d_30C 0.788274 no
7d_25C 10d_25C 0.234604 no
7d_15C 7d_30C 0.437583 no
7d_15C 10d_25C 0.074572 no
7d_30C 10d_25C 0.431788 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6107.t1
MASKSQPARGGADSKAVATGAPNQTLYCTNLPDRRIQKQDLRTALYALFSTYGTVLDVVCMKTNKMRGQAHIVFR
DVQASTQALRALQGFDFFGKQMKIVYGKGSSNVISKLRGTYVAPVETAPAPVTTDLQKSIFGAPPGALPPRPTTD
TNGEGHGVKRPREEESDNEEAPMDEDSDVPMDASSDEE*
Coding >Pro_DTO377G3_2|g6107.t1
ATGGCTTCAAAATCACAGCCCGCCCGTGGAGGCGCTGACAGCAAGGCTGTCGCTACTGGCGCTCCTAACCAGACA
CTCTACTGCACAAATTTGCCCGACAGAAGAATTCAGAAACAGGATCTCCGAACCGCACTCTATGCCTTGTTCTCC
ACATACGGCACCGTTCTCGATGTTGTTTGCATGAAGACCAACAAAATGCGAGGCCAAGCCCATATTGTGTTCAGG
GATGTCCAAGCTAGTACGCAGGCACTCCGGGCTTTACAAGGATTCGATTTTTTCGGCAAACAGATGAAAATCGTG
TACGGCAAGGGATCATCGAATGTCATTTCCAAACTTCGGGGCACATACGTCGCGCCAGTTGAGACTGCGCCAGCC
CCCGTCACGACCGACCTCCAGAAGTCTATCTTCGGTGCTCCTCCCGGTGCACTCCCTCCACGACCCACAACCGAT
ACCAATGGAGAGGGCCATGGCGTGAAGCGACCGCGTGAAGAGGAAAGCGACAACGAAGAAGCCCCGATGGACGAA
GACAGCGACGTGCCTATGGACGCGTCCTCCGATGAGGAGTAA
Transcript >Pro_DTO377G3_2|g6107.t1
ATGGCTTCAAAATCACAGCCCGCCCGTGGAGGCGCTGACAGCAAGGCTGTCGCTACTGGCGCTCCTAACCAGACA
CTCTACTGCACAAATTTGCCCGACAGAAGAATTCAGAAACAGGATCTCCGAACCGCACTCTATGCCTTGTTCTCC
ACATACGGCACCGTTCTCGATGTTGTTTGCATGAAGACCAACAAAATGCGAGGCCAAGCCCATATTGTGTTCAGG
GATGTCCAAGCTAGTACGCAGGCACTCCGGGCTTTACAAGGATTCGATTTTTTCGGCAAACAGATGAAAATCGTG
TACGGCAAGGGATCATCGAATGTCATTTCCAAACTTCGGGGCACATACGTCGCGCCAGTTGAGACTGCGCCAGCC
CCCGTCACGACCGACCTCCAGAAGTCTATCTTCGGTGCTCCTCCCGGTGCACTCCCTCCACGACCCACAACCGAT
ACCAATGGAGAGGGCCATGGCGTGAAGCGACCGCGTGAAGAGGAAAGCGACAACGAAGAAGCCCCGATGGACGAA
GACAGCGACGTGCCTATGGACGCGTCCTCCGATGAGGAGTAA
Gene >Pro_DTO377G3_2|g6107.t1
ATGGCTTCAAAATCACAGCCCGCCCGTGGAGGCGCTGACAGCAAGGCTGTCGCTACTGGCGCTCCTAACCAGACG
TGAGCTTGCCCTTCCAAGCACAGGAGATTGTCGCGGATTGGCGCTAACAATTTTTAGACTCTACTGCACAAATTT
GCCCGACAGAAGAATTCAGAAACAGGATCTCCGAACCGCACTCTATGCCTTGTTCTCCACATACGGCACCGTTCT
CGATGTTGTTTGCATGAAGACCAACAAAATGCGAGGCCAAGCCCATATTGTGTTCAGGGATGTCCAAGCTAGTAC
GCAGGCACTCCGGGCTTTACAAGGATTCGATTTTTTCGGCAAACAGATGGTATGTTTTCATTGCGCTTCGGTCAT
CGCAACCCCCCGCTCAATCAATGGATGTCTAGAAAATCGTGTACGGCAAGGGATCATCGAATGTCATTTCCAAAC
TTCGGGGCACATACGTCGCGCCAGTTGAGACTGCGCCAGCCCCCGTCACGACCGACCTCCAGAAGTCTATCTTCG
GTGCTCCTCCCGGTGCACTCCCTCCACGACCCACAACCGATACCAATGGAGAGGGCCATGGCGTGAAGCGACCGC
GTGAAGAGGAAAGCGACAACGAAGAAGCCCCGATGGACGAAGACAGCGACGTGCCTATGGACGCGTCCTCCGATG
AGGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail