Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6054.t1
Gene name
Locationscaffold_15:489896..491218
Strand-
Gene length (bp)1322
Transcript length (bp)1275
Coding sequence length (bp)1275
Protein length (aa) 425

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07716 bZIP_2 Basic region leucine zipper 1.7E-10 77 130
PF00170 bZIP_1 bZIP transcription factor 5.2E-07 76 138

GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0003700 DNA-binding transcription factor activity Yes
GO:0003674 molecular_function No
GO:0031323 regulation of cellular metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:0008150 biological_process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0010468 regulation of gene expression No
GO:0140110 transcription regulator activity No
GO:0050789 regulation of biological process No
GO:2001141 regulation of RNA biosynthetic process No
GO:0065007 biological regulation No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0019222 regulation of metabolic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:0009889 regulation of biosynthetic process No
GO:0050794 regulation of cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 55 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
bZIP

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 410.58 233.74 587.42
5d_25C Five days - 25 degrees Celsius 452.77 262.92 642.61
7d_25C Seven days - 25 degrees Celsius 496.81 287.60 706.02
10d_25C Ten days - 25 degrees Celsius 520.63 299.00 742.26
7d_15C Seven days - 15 degrees Celsius 376.54 221.19 531.90
7d_30C Seven days - 30 degrees Celsius 466.26 268.77 663.75

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.762991 no
3d_25C 7d_25C 0.489741 no
3d_25C 7d_15C 0.791203 no
3d_25C 7d_30C 0.676614 no
3d_25C 10d_25C 0.365614 no
5d_25C 7d_25C 0.770976 no
5d_25C 7d_15C 0.502056 no
5d_25C 7d_30C 0.937609 no
5d_25C 10d_25C 0.633957 no
7d_25C 7d_15C 0.260387 no
7d_25C 7d_30C 0.852305 no
7d_25C 10d_25C 0.895946 no
7d_15C 7d_30C 0.414475 no
7d_15C 10d_25C 0.168311 no
7d_30C 10d_25C 0.714311 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6054.t1
MADTINPMDTLPTSPCPEMYTVSPADTSLDSPEPEDDIKEEDDEKKPTKKRKSWGQELPTPKTNLPPRKRAKTDD
EKEQRRIERVLRNRAAAQTSRERKRLEMEKLETEKIRMEQQNQFLIQRLSQMESENNRLSQQVAKLSAEVRGSRS
VTPKASSPAIESPTLTPTLFKQEGDELPMERIPFPTPSVTDYSPTFTPSTLAEASDVTQHPAAVLCDLQCPSLAS
KDLEAPFRSSTSPNLKLHMMLQLLFLTMTSAACSTVIHPLSQILLSLKTGSPLTFSTAEIYQHFPLILWLISTPS
LSSSKVSNRPVFRMRLLTRLLACSPALARPLRDATGRALQLAVSETFSRQTWSAGASEARPSWESLLTMAWAIDS
LSLSKRQQRGNTMKFSRQRSNGKMHRGTRSFRSSSASKALSSLLMGKQR*
Coding >Pro_DTO377G3_2|g6054.t1
ATGGCGGATACTATCAACCCAATGGATACCCTCCCAACCTCCCCATGTCCCGAGATGTACACAGTTTCTCCCGCG
GATACATCATTAGACTCTCCGGAGCCGGAAGATGACATTAAGGAAGAAGATGATGAGAAGAAGCCAACAAAGAAG
AGAAAGTCTTGGGGACAAGAACTCCCAACCCCCAAAACCAATCTCCCTCCCAGAAAACGCGCCAAAACAGATGAT
GAGAAGGAGCAGCGTCGGATAGAACGGGTCCTTCGAAACCGTGCTGCTGCTCAAACATCTCGCGAGCGCAAGCGC
CTCGAAATGGAGAAGCTGGAGACCGAAAAGATCCGCATGGAGCAACAGAACCAGTTCTTGATCCAGCGTCTATCG
CAGATGGAGTCGGAGAACAACCGCTTGAGCCAACAAGTGGCTAAGCTCTCCGCCGAGGTCCGTGGATCTCGCAGC
GTGACTCCCAAAGCCAGCTCCCCGGCCATCGAATCTCCTACCCTCACGCCTACCCTCTTCAAACAAGAAGGCGAC
GAACTCCCTATGGAACGGATTCCTTTCCCCACTCCATCCGTCACCGACTACTCCCCCACCTTCACACCTTCCACT
CTGGCTGAGGCCTCCGACGTGACACAACATCCTGCAGCGGTGTTGTGTGACCTGCAGTGTCCGTCGCTGGCCTCG
AAGGATCTGGAAGCGCCCTTCCGCTCTTCGACCTCTCCGAACCTCAAACTGCACATGATGTTGCAGCTCCTCTTT
CTGACGATGACTTCCGCCGCCTGTTCCACGGTGATTCACCCGCTGAGCCAAATCCTTCTTTCCCTGAAGACGGGT
TCGCCTTTGACGTTCTCGACGGCGGAGATCTATCAGCATTTCCCTTTGATTCTATGGTTGATTTCGACCCCGAGT
CTGTCGTCCTCGAAGGTGTCCAACCGACCGGTCTTTCGGATGAGACTTCTCACCAGACTACTAGCTTGCAGCCCA
GCCTTGGCGCGTCCGCTTCGAGATGCGACGGGCAGAGCATTGCAGCTAGCGGTTAGTGAGACTTTCTCCCGACAG
ACCTGGTCGGCTGGCGCCTCCGAGGCTCGACCGAGTTGGGAGTCGTTATTAACCATGGCCTGGGCAATCGATAGT
CTCAGCCTGTCTAAACGGCAGCAGCGGGGAAACACAATGAAATTTAGTCGGCAACGCAGTAATGGAAAGATGCAT
CGAGGTACACGGAGTTTTCGGAGTTCCAGCGCGAGCAAAGCTCTTTCGTCTTTGCTCATGGGCAAACAGCGCTGA
Transcript >Pro_DTO377G3_2|g6054.t1
ATGGCGGATACTATCAACCCAATGGATACCCTCCCAACCTCCCCATGTCCCGAGATGTACACAGTTTCTCCCGCG
GATACATCATTAGACTCTCCGGAGCCGGAAGATGACATTAAGGAAGAAGATGATGAGAAGAAGCCAACAAAGAAG
AGAAAGTCTTGGGGACAAGAACTCCCAACCCCCAAAACCAATCTCCCTCCCAGAAAACGCGCCAAAACAGATGAT
GAGAAGGAGCAGCGTCGGATAGAACGGGTCCTTCGAAACCGTGCTGCTGCTCAAACATCTCGCGAGCGCAAGCGC
CTCGAAATGGAGAAGCTGGAGACCGAAAAGATCCGCATGGAGCAACAGAACCAGTTCTTGATCCAGCGTCTATCG
CAGATGGAGTCGGAGAACAACCGCTTGAGCCAACAAGTGGCTAAGCTCTCCGCCGAGGTCCGTGGATCTCGCAGC
GTGACTCCCAAAGCCAGCTCCCCGGCCATCGAATCTCCTACCCTCACGCCTACCCTCTTCAAACAAGAAGGCGAC
GAACTCCCTATGGAACGGATTCCTTTCCCCACTCCATCCGTCACCGACTACTCCCCCACCTTCACACCTTCCACT
CTGGCTGAGGCCTCCGACGTGACACAACATCCTGCAGCGGTGTTGTGTGACCTGCAGTGTCCGTCGCTGGCCTCG
AAGGATCTGGAAGCGCCCTTCCGCTCTTCGACCTCTCCGAACCTCAAACTGCACATGATGTTGCAGCTCCTCTTT
CTGACGATGACTTCCGCCGCCTGTTCCACGGTGATTCACCCGCTGAGCCAAATCCTTCTTTCCCTGAAGACGGGT
TCGCCTTTGACGTTCTCGACGGCGGAGATCTATCAGCATTTCCCTTTGATTCTATGGTTGATTTCGACCCCGAGT
CTGTCGTCCTCGAAGGTGTCCAACCGACCGGTCTTTCGGATGAGACTTCTCACCAGACTACTAGCTTGCAGCCCA
GCCTTGGCGCGTCCGCTTCGAGATGCGACGGGCAGAGCATTGCAGCTAGCGGTTAGTGAGACTTTCTCCCGACAG
ACCTGGTCGGCTGGCGCCTCCGAGGCTCGACCGAGTTGGGAGTCGTTATTAACCATGGCCTGGGCAATCGATAGT
CTCAGCCTGTCTAAACGGCAGCAGCGGGGAAACACAATGAAATTTAGTCGGCAACGCAGTAATGGAAAGATGCAT
CGAGGTACACGGAGTTTTCGGAGTTCCAGCGCGAGCAAAGCTCTTTCGTCTTTGCTCATGGGCAAACAGCGCTGA
Gene >Pro_DTO377G3_2|g6054.t1
ATGGCGGATACTATCAACCCAATGGATACCCTCCCAACCTCCCCATGTCCCGAGATGTACACAGTTTCTCCCGCG
GATACATCATTAGACTCTCCGGAGCCGGAAGATGACATTAAGGAAGAAGATGATGAGAAGAAGCCAACAAAGAAG
AGAAAGTCTTGGGGACAAGAACTCCCAACCCCCAAAACCAATCTCCCTCCCAGGTATGTTGTCCACCCCTGCGTA
AATGTGAACCCAACTGACTCTTTAGAAAACGCGCCAAAACAGATGATGAGAAGGAGCAGCGTCGGATAGAACGGG
TCCTTCGAAACCGTGCTGCTGCTCAAACATCTCGCGAGCGCAAGCGCCTCGAAATGGAGAAGCTGGAGACCGAAA
AGATCCGCATGGAGCAACAGAACCAGTTCTTGATCCAGCGTCTATCGCAGATGGAGTCGGAGAACAACCGCTTGA
GCCAACAAGTGGCTAAGCTCTCCGCCGAGGTCCGTGGATCTCGCAGCGTGACTCCCAAAGCCAGCTCCCCGGCCA
TCGAATCTCCTACCCTCACGCCTACCCTCTTCAAACAAGAAGGCGACGAACTCCCTATGGAACGGATTCCTTTCC
CCACTCCATCCGTCACCGACTACTCCCCCACCTTCACACCTTCCACTCTGGCTGAGGCCTCCGACGTGACACAAC
ATCCTGCAGCGGTGTTGTGTGACCTGCAGTGTCCGTCGCTGGCCTCGAAGGATCTGGAAGCGCCCTTCCGCTCTT
CGACCTCTCCGAACCTCAAACTGCACATGATGTTGCAGCTCCTCTTTCTGACGATGACTTCCGCCGCCTGTTCCA
CGGTGATTCACCCGCTGAGCCAAATCCTTCTTTCCCTGAAGACGGGTTCGCCTTTGACGTTCTCGACGGCGGAGA
TCTATCAGCATTTCCCTTTGATTCTATGGTTGATTTCGACCCCGAGTCTGTCGTCCTCGAAGGTGTCCAACCGAC
CGGTCTTTCGGATGAGACTTCTCACCAGACTACTAGCTTGCAGCCCAGCCTTGGCGCGTCCGCTTCGAGATGCGA
CGGGCAGAGCATTGCAGCTAGCGGTTAGTGAGACTTTCTCCCGACAGACCTGGTCGGCTGGCGCCTCCGAGGCTC
GACCGAGTTGGGAGTCGTTATTAACCATGGCCTGGGCAATCGATAGTCTCAGCCTGTCTAAACGGCAGCAGCGGG
GAAACACAATGAAATTTAGTCGGCAACGCAGTAATGGAAAGATGCATCGAGGTACACGGAGTTTTCGGAGTTCCA
GCGCGAGCAAAGCTCTTTCGTCTTTGCTCATGGGCAAACAGCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail