© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6054.t1 |
| Gene name | |
| Location | scaffold_15:489896..491218 |
| Strand | - |
| Gene length (bp) | 1322 |
| Transcript length (bp) | 1275 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07716 | bZIP_2 | Basic region leucine zipper | 1.7E-10 | 77 | 130 |
| PF00170 | bZIP_1 | bZIP transcription factor | 5.2E-07 | 76 | 138 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0003700 | DNA-binding transcription factor activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0050789 | regulation of biological process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| bZIP |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 410.58 | 233.74 | 587.42 |
| 5d_25C | Five days - 25 degrees Celsius | 452.77 | 262.92 | 642.61 |
| 7d_25C | Seven days - 25 degrees Celsius | 496.81 | 287.60 | 706.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 520.63 | 299.00 | 742.26 |
| 7d_15C | Seven days - 15 degrees Celsius | 376.54 | 221.19 | 531.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 466.26 | 268.77 | 663.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.762991 | no |
| 3d_25C | 7d_25C | 0.489741 | no |
| 3d_25C | 7d_15C | 0.791203 | no |
| 3d_25C | 7d_30C | 0.676614 | no |
| 3d_25C | 10d_25C | 0.365614 | no |
| 5d_25C | 7d_25C | 0.770976 | no |
| 5d_25C | 7d_15C | 0.502056 | no |
| 5d_25C | 7d_30C | 0.937609 | no |
| 5d_25C | 10d_25C | 0.633957 | no |
| 7d_25C | 7d_15C | 0.260387 | no |
| 7d_25C | 7d_30C | 0.852305 | no |
| 7d_25C | 10d_25C | 0.895946 | no |
| 7d_15C | 7d_30C | 0.414475 | no |
| 7d_15C | 10d_25C | 0.168311 | no |
| 7d_30C | 10d_25C | 0.714311 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6054.t1 MADTINPMDTLPTSPCPEMYTVSPADTSLDSPEPEDDIKEEDDEKKPTKKRKSWGQELPTPKTNLPPRKRAKTDD EKEQRRIERVLRNRAAAQTSRERKRLEMEKLETEKIRMEQQNQFLIQRLSQMESENNRLSQQVAKLSAEVRGSRS VTPKASSPAIESPTLTPTLFKQEGDELPMERIPFPTPSVTDYSPTFTPSTLAEASDVTQHPAAVLCDLQCPSLAS KDLEAPFRSSTSPNLKLHMMLQLLFLTMTSAACSTVIHPLSQILLSLKTGSPLTFSTAEIYQHFPLILWLISTPS LSSSKVSNRPVFRMRLLTRLLACSPALARPLRDATGRALQLAVSETFSRQTWSAGASEARPSWESLLTMAWAIDS LSLSKRQQRGNTMKFSRQRSNGKMHRGTRSFRSSSASKALSSLLMGKQR* |
| Coding | >Pro_DTO377G3_2|g6054.t1 ATGGCGGATACTATCAACCCAATGGATACCCTCCCAACCTCCCCATGTCCCGAGATGTACACAGTTTCTCCCGCG GATACATCATTAGACTCTCCGGAGCCGGAAGATGACATTAAGGAAGAAGATGATGAGAAGAAGCCAACAAAGAAG AGAAAGTCTTGGGGACAAGAACTCCCAACCCCCAAAACCAATCTCCCTCCCAGAAAACGCGCCAAAACAGATGAT GAGAAGGAGCAGCGTCGGATAGAACGGGTCCTTCGAAACCGTGCTGCTGCTCAAACATCTCGCGAGCGCAAGCGC CTCGAAATGGAGAAGCTGGAGACCGAAAAGATCCGCATGGAGCAACAGAACCAGTTCTTGATCCAGCGTCTATCG CAGATGGAGTCGGAGAACAACCGCTTGAGCCAACAAGTGGCTAAGCTCTCCGCCGAGGTCCGTGGATCTCGCAGC GTGACTCCCAAAGCCAGCTCCCCGGCCATCGAATCTCCTACCCTCACGCCTACCCTCTTCAAACAAGAAGGCGAC GAACTCCCTATGGAACGGATTCCTTTCCCCACTCCATCCGTCACCGACTACTCCCCCACCTTCACACCTTCCACT CTGGCTGAGGCCTCCGACGTGACACAACATCCTGCAGCGGTGTTGTGTGACCTGCAGTGTCCGTCGCTGGCCTCG AAGGATCTGGAAGCGCCCTTCCGCTCTTCGACCTCTCCGAACCTCAAACTGCACATGATGTTGCAGCTCCTCTTT CTGACGATGACTTCCGCCGCCTGTTCCACGGTGATTCACCCGCTGAGCCAAATCCTTCTTTCCCTGAAGACGGGT TCGCCTTTGACGTTCTCGACGGCGGAGATCTATCAGCATTTCCCTTTGATTCTATGGTTGATTTCGACCCCGAGT CTGTCGTCCTCGAAGGTGTCCAACCGACCGGTCTTTCGGATGAGACTTCTCACCAGACTACTAGCTTGCAGCCCA GCCTTGGCGCGTCCGCTTCGAGATGCGACGGGCAGAGCATTGCAGCTAGCGGTTAGTGAGACTTTCTCCCGACAG ACCTGGTCGGCTGGCGCCTCCGAGGCTCGACCGAGTTGGGAGTCGTTATTAACCATGGCCTGGGCAATCGATAGT CTCAGCCTGTCTAAACGGCAGCAGCGGGGAAACACAATGAAATTTAGTCGGCAACGCAGTAATGGAAAGATGCAT CGAGGTACACGGAGTTTTCGGAGTTCCAGCGCGAGCAAAGCTCTTTCGTCTTTGCTCATGGGCAAACAGCGCTGA |
| Transcript | >Pro_DTO377G3_2|g6054.t1 ATGGCGGATACTATCAACCCAATGGATACCCTCCCAACCTCCCCATGTCCCGAGATGTACACAGTTTCTCCCGCG GATACATCATTAGACTCTCCGGAGCCGGAAGATGACATTAAGGAAGAAGATGATGAGAAGAAGCCAACAAAGAAG AGAAAGTCTTGGGGACAAGAACTCCCAACCCCCAAAACCAATCTCCCTCCCAGAAAACGCGCCAAAACAGATGAT GAGAAGGAGCAGCGTCGGATAGAACGGGTCCTTCGAAACCGTGCTGCTGCTCAAACATCTCGCGAGCGCAAGCGC CTCGAAATGGAGAAGCTGGAGACCGAAAAGATCCGCATGGAGCAACAGAACCAGTTCTTGATCCAGCGTCTATCG CAGATGGAGTCGGAGAACAACCGCTTGAGCCAACAAGTGGCTAAGCTCTCCGCCGAGGTCCGTGGATCTCGCAGC GTGACTCCCAAAGCCAGCTCCCCGGCCATCGAATCTCCTACCCTCACGCCTACCCTCTTCAAACAAGAAGGCGAC GAACTCCCTATGGAACGGATTCCTTTCCCCACTCCATCCGTCACCGACTACTCCCCCACCTTCACACCTTCCACT CTGGCTGAGGCCTCCGACGTGACACAACATCCTGCAGCGGTGTTGTGTGACCTGCAGTGTCCGTCGCTGGCCTCG AAGGATCTGGAAGCGCCCTTCCGCTCTTCGACCTCTCCGAACCTCAAACTGCACATGATGTTGCAGCTCCTCTTT CTGACGATGACTTCCGCCGCCTGTTCCACGGTGATTCACCCGCTGAGCCAAATCCTTCTTTCCCTGAAGACGGGT TCGCCTTTGACGTTCTCGACGGCGGAGATCTATCAGCATTTCCCTTTGATTCTATGGTTGATTTCGACCCCGAGT CTGTCGTCCTCGAAGGTGTCCAACCGACCGGTCTTTCGGATGAGACTTCTCACCAGACTACTAGCTTGCAGCCCA GCCTTGGCGCGTCCGCTTCGAGATGCGACGGGCAGAGCATTGCAGCTAGCGGTTAGTGAGACTTTCTCCCGACAG ACCTGGTCGGCTGGCGCCTCCGAGGCTCGACCGAGTTGGGAGTCGTTATTAACCATGGCCTGGGCAATCGATAGT CTCAGCCTGTCTAAACGGCAGCAGCGGGGAAACACAATGAAATTTAGTCGGCAACGCAGTAATGGAAAGATGCAT CGAGGTACACGGAGTTTTCGGAGTTCCAGCGCGAGCAAAGCTCTTTCGTCTTTGCTCATGGGCAAACAGCGCTGA |
| Gene | >Pro_DTO377G3_2|g6054.t1 ATGGCGGATACTATCAACCCAATGGATACCCTCCCAACCTCCCCATGTCCCGAGATGTACACAGTTTCTCCCGCG GATACATCATTAGACTCTCCGGAGCCGGAAGATGACATTAAGGAAGAAGATGATGAGAAGAAGCCAACAAAGAAG AGAAAGTCTTGGGGACAAGAACTCCCAACCCCCAAAACCAATCTCCCTCCCAGGTATGTTGTCCACCCCTGCGTA AATGTGAACCCAACTGACTCTTTAGAAAACGCGCCAAAACAGATGATGAGAAGGAGCAGCGTCGGATAGAACGGG TCCTTCGAAACCGTGCTGCTGCTCAAACATCTCGCGAGCGCAAGCGCCTCGAAATGGAGAAGCTGGAGACCGAAA AGATCCGCATGGAGCAACAGAACCAGTTCTTGATCCAGCGTCTATCGCAGATGGAGTCGGAGAACAACCGCTTGA GCCAACAAGTGGCTAAGCTCTCCGCCGAGGTCCGTGGATCTCGCAGCGTGACTCCCAAAGCCAGCTCCCCGGCCA TCGAATCTCCTACCCTCACGCCTACCCTCTTCAAACAAGAAGGCGACGAACTCCCTATGGAACGGATTCCTTTCC CCACTCCATCCGTCACCGACTACTCCCCCACCTTCACACCTTCCACTCTGGCTGAGGCCTCCGACGTGACACAAC ATCCTGCAGCGGTGTTGTGTGACCTGCAGTGTCCGTCGCTGGCCTCGAAGGATCTGGAAGCGCCCTTCCGCTCTT CGACCTCTCCGAACCTCAAACTGCACATGATGTTGCAGCTCCTCTTTCTGACGATGACTTCCGCCGCCTGTTCCA CGGTGATTCACCCGCTGAGCCAAATCCTTCTTTCCCTGAAGACGGGTTCGCCTTTGACGTTCTCGACGGCGGAGA TCTATCAGCATTTCCCTTTGATTCTATGGTTGATTTCGACCCCGAGTCTGTCGTCCTCGAAGGTGTCCAACCGAC CGGTCTTTCGGATGAGACTTCTCACCAGACTACTAGCTTGCAGCCCAGCCTTGGCGCGTCCGCTTCGAGATGCGA CGGGCAGAGCATTGCAGCTAGCGGTTAGTGAGACTTTCTCCCGACAGACCTGGTCGGCTGGCGCCTCCGAGGCTC GACCGAGTTGGGAGTCGTTATTAACCATGGCCTGGGCAATCGATAGTCTCAGCCTGTCTAAACGGCAGCAGCGGG GAAACACAATGAAATTTAGTCGGCAACGCAGTAATGGAAAGATGCATCGAGGTACACGGAGTTTTCGGAGTTCCA GCGCGAGCAAAGCTCTTTCGTCTTTGCTCATGGGCAAACAGCGCTGA |