© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6045.t1 |
| Gene name | |
| Location | scaffold_15:473553..475011 |
| Strand | + |
| Gene length (bp) | 1458 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00175 | NAD_binding_1 | Oxidoreductase NAD-binding domain | 2.1E-33 | 338 | 445 |
| PF00970 | FAD_binding_6 | Oxidoreductase FAD-binding domain | 6.9E-27 | 230 | 328 |
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 1.8E-21 | 17 | 88 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.47 | 0.92 | 6.02 |
| 5d_25C | Five days - 25 degrees Celsius | 4.96 | 1.57 | 8.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.03 | 1.40 | 8.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.04 | 1.55 | 8.52 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.66 | 1.00 | 6.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.53 | 2.28 | 10.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.429975 | no |
| 3d_25C | 7d_25C | 0.425021 | no |
| 3d_25C | 7d_15C | 0.930710 | no |
| 3d_25C | 7d_30C | 0.100169 | no |
| 3d_25C | 10d_25C | 0.401929 | no |
| 5d_25C | 7d_25C | 0.983077 | no |
| 5d_25C | 7d_15C | 0.527214 | no |
| 5d_25C | 7d_30C | 0.528301 | no |
| 5d_25C | 10d_25C | 0.978573 | no |
| 7d_25C | 7d_15C | 0.517085 | no |
| 7d_25C | 7d_30C | 0.570747 | no |
| 7d_25C | 10d_25C | 0.997342 | no |
| 7d_15C | 7d_30C | 0.136703 | no |
| 7d_15C | 10d_25C | 0.495714 | no |
| 7d_30C | 10d_25C | 0.562030 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6045.t1 MSVPETKELKVELPEYTLKDVAAHNTKGDTWMVIHGQVFDLTKYLHDHPGGPEVLLEVAGTDATADYEDVGHSED AREIMQPFLVGTLKDAHQYVQPKTVRVVSQKAPEVANSSSSTIKTIAFTLGGLAPVFYLISQRNNLTKSLGAISH LIPHPLKNLRLPHGGFINGFLAASAISTVLGVMVARQASRFTKIDSGFMRFPPHKKSKKVLRVDPHLARGFLDPQ HYQRLHLVEKTELATNVYRFVFALPTATGILGLPIGQHVSIRAVVDGASITRSYTPTSNNLDRGRIELVIKCYPD GLLSGKYLAGLTVGEEVEFRGPKGSMRYTQGLCRKIGMVAGGTGITPMFQLIRAICENDTDTTEVSLVYANRSES DILLREELERFARQYPKNFKLWYMLDSAPEGWTYGSGYVDQAVLAKQLPAPSPDTKVMLCGPPGMVNATKKNLVA LGFTKPGVVGKMTDQIFCF* |
| Coding | >Pro_DTO377G3_2|g6045.t1 ATGTCCGTTCCAGAAACAAAAGAGCTCAAGGTCGAGCTGCCAGAGTATACATTGAAAGATGTGGCAGCACATAAC ACCAAGGGTGATACCTGGATGGTGATCCACGGACAAGTCTTTGACCTCACAAAATATCTGCATGATCACCCAGGT GGTCCAGAGGTTCTCCTCGAGGTAGCCGGTACTGATGCCACAGCAGACTATGAGGATGTTGGGCATTCTGAAGAC GCCCGCGAGATCATGCAGCCCTTCCTGGTGGGCACTTTGAAGGATGCTCATCAGTACGTCCAGCCTAAGACAGTG CGTGTGGTCTCCCAAAAAGCACCTGAAGTGGCCAATTCCTCATCGTCGACCATCAAAACGATCGCTTTCACTTTG GGTGGACTGGCCCCAGTCTTTTACCTCATCAGCCAAAGAAACAATCTCACAAAGAGCCTGGGAGCCATCTCCCAC TTGATCCCTCACCCACTGAAGAACCTACGACTACCTCACGGGGGCTTCATCAACGGCTTCTTGGCCGCTTCTGCT ATCTCCACAGTCCTGGGTGTAATGGTAGCGCGACAGGCCAGCAGATTCACCAAGATCGACTCCGGGTTCATGCGG TTCCCACCTCATAAGAAGTCAAAGAAGGTGCTTCGTGTCGATCCGCACCTGGCACGCGGCTTCCTCGACCCGCAA CATTATCAACGCCTGCATCTCGTTGAAAAGACCGAACTAGCAACGAATGTCTACCGTTTCGTCTTTGCCCTGCCA ACCGCCACAGGTATTTTGGGTCTACCCATTGGCCAACACGTCTCCATCAGAGCCGTTGTCGACGGAGCGAGTATT ACTCGCTCATACACCCCTACCTCTAACAACCTCGACCGGGGCCGCATTGAACTCGTGATCAAATGCTATCCCGAC GGTTTATTGAGCGGGAAGTATCTGGCCGGCTTGACTGTCGGCGAAGAAGTCGAATTCCGCGGGCCCAAGGGCTCT ATGCGTTATACGCAAGGTCTTTGTCGCAAGATCGGCATGGTGGCCGGCGGCACAGGCATCACACCCATGTTCCAG CTTATCCGGGCGATTTGCGAGAATGACACCGACACGACGGAGGTTAGTCTGGTTTATGCGAACCGCAGCGAGTCT GACATTCTCTTGCGCGAAGAGCTTGAACGCTTCGCGCGCCAATACCCGAAGAACTTCAAGCTGTGGTATATGCTA GACTCTGCGCCCGAGGGCTGGACCTATGGATCGGGATACGTGGACCAGGCAGTTCTGGCAAAGCAGCTCCCTGCG CCTTCGCCGGACACTAAGGTGATGCTATGTGGGCCGCCCGGAATGGTCAATGCCACTAAGAAGAATTTGGTTGCG TTGGGCTTTACAAAGCCAGGGGTGGTGGGGAAGATGACCGATCAAATATTTTGTTTCTAG |
| Transcript | >Pro_DTO377G3_2|g6045.t1 ATGTCCGTTCCAGAAACAAAAGAGCTCAAGGTCGAGCTGCCAGAGTATACATTGAAAGATGTGGCAGCACATAAC ACCAAGGGTGATACCTGGATGGTGATCCACGGACAAGTCTTTGACCTCACAAAATATCTGCATGATCACCCAGGT GGTCCAGAGGTTCTCCTCGAGGTAGCCGGTACTGATGCCACAGCAGACTATGAGGATGTTGGGCATTCTGAAGAC GCCCGCGAGATCATGCAGCCCTTCCTGGTGGGCACTTTGAAGGATGCTCATCAGTACGTCCAGCCTAAGACAGTG CGTGTGGTCTCCCAAAAAGCACCTGAAGTGGCCAATTCCTCATCGTCGACCATCAAAACGATCGCTTTCACTTTG GGTGGACTGGCCCCAGTCTTTTACCTCATCAGCCAAAGAAACAATCTCACAAAGAGCCTGGGAGCCATCTCCCAC TTGATCCCTCACCCACTGAAGAACCTACGACTACCTCACGGGGGCTTCATCAACGGCTTCTTGGCCGCTTCTGCT ATCTCCACAGTCCTGGGTGTAATGGTAGCGCGACAGGCCAGCAGATTCACCAAGATCGACTCCGGGTTCATGCGG TTCCCACCTCATAAGAAGTCAAAGAAGGTGCTTCGTGTCGATCCGCACCTGGCACGCGGCTTCCTCGACCCGCAA CATTATCAACGCCTGCATCTCGTTGAAAAGACCGAACTAGCAACGAATGTCTACCGTTTCGTCTTTGCCCTGCCA ACCGCCACAGGTATTTTGGGTCTACCCATTGGCCAACACGTCTCCATCAGAGCCGTTGTCGACGGAGCGAGTATT ACTCGCTCATACACCCCTACCTCTAACAACCTCGACCGGGGCCGCATTGAACTCGTGATCAAATGCTATCCCGAC GGTTTATTGAGCGGGAAGTATCTGGCCGGCTTGACTGTCGGCGAAGAAGTCGAATTCCGCGGGCCCAAGGGCTCT ATGCGTTATACGCAAGGTCTTTGTCGCAAGATCGGCATGGTGGCCGGCGGCACAGGCATCACACCCATGTTCCAG CTTATCCGGGCGATTTGCGAGAATGACACCGACACGACGGAGGTTAGTCTGGTTTATGCGAACCGCAGCGAGTCT GACATTCTCTTGCGCGAAGAGCTTGAACGCTTCGCGCGCCAATACCCGAAGAACTTCAAGCTGTGGTATATGCTA GACTCTGCGCCCGAGGGCTGGACCTATGGATCGGGATACGTGGACCAGGCAGTTCTGGCAAAGCAGCTCCCTGCG CCTTCGCCGGACACTAAGGTGATGCTATGTGGGCCGCCCGGAATGGTCAATGCCACTAAGAAGAATTTGGTTGCG TTGGGCTTTACAAAGCCAGGGGTGGTGGGGAAGATGACCGATCAAATATTTTGTTTCTAG |
| Gene | >Pro_DTO377G3_2|g6045.t1 ATGTCCGTTCCAGAAACAAAAGAGCTCAAGGTCGAGCTGCCAGAGTATACATTGAAAGATGTGGCAGCACATAAC ACCAAGGGTGATACCTGGATGGTGATCCACGGACAAGGTAACTTCCCCTTAAATAATCAAAAAGACGGTGCTAAC ATTACGACAGTCTTTGACCTCACAAAATATCTGCATGATCACCCAGGTGGTCCAGAGGTTCTCCTCGAGGTAGCC GGTACTGATGCCACAGCAGACTATGAGGATGTTGGGCATTCTGAAGACGCCCGCGAGATCATGCAGCCCTTCCTG GTGGGCACTTTGAAGGATGCTCATCAGTACGTCCAGCCTAAGACAGTGCGTGTGGTCTCCCAAAAAGCACCTGAA GTGGCCAATTCCTCATCGTCGACCATCAAAACGATCGCTTTCACTTTGGGTGGACTGGCCCCAGTCTTTTACCTC ATCAGCCAAAGAAACAATCTCACAAAGAGCCTGGGAGCCATCTCCCACTTGATCCCTCACCCACTGAAGAACCTA CGACTACCTCACGGGGGCTTCATCAACGGCTTCTTGGCCGCTTCTGCTATCTCCACAGTCCTGGGTGTAATGGTA GCGCGACAGGCCAGCAGATTCACCAAGATCGACTCCGGGTTCATGCGGTTCCCACCTCATAAGAAGTCAAAGAAG GTGCTTCGTGTCGATCCGCACCTGGCACGCGGCTTCCTCGACCCGCAACATTATCAACGCCTGCATCTCGTTGAA AAGACCGAACTAGCAACGAATGTCTACCGTTTCGTCTTTGCCCTGCCAACCGCCACAGGTATTTTGGGTCTACCC ATTGGCCAACACGTCTCCATCAGAGCCGTTGTCGACGGAGCGAGTATTACTCGCTCATACACCCCTACCTCTAAC AACCTCGACCGGGGCCGCATTGAACTCGTGATCAAATGCTATCCCGACGGTTTATTGAGCGGGAAGTATCTGGCC GGCTTGACTGTCGGCGAAGAAGTCGAATTCCGCGGGCCCAAGGGCTCTATGCGTTATACGCAAGGTCTTTGTCGC AAGATCGGCATGGTGGCCGGCGGCACAGGCATCACACCCATGTTCCAGCTTATCCGGGCGATTTGCGAGAATGAC ACCGACACGACGGAGGTTAGTCTGGTTTATGCGAACCGCAGCGAGTCTGACATTCTCTTGCGCGAAGAGCTTGAA CGCTTCGCGCGCCAATACCCGAAGAACTTCAAGCTGTGGTATATGCTAGACTCTGCGCCCGAGGGCTGGACCTAT GGATCGGGATACGTGGACCAGGCAGTTCTGGCAAAGCAGCTCCCTGCGCCTTCGCCGGACACTAAGGTGATGCTA TGTGGGCCGCCCGGAATGGTCAATGCCACTAAGAAGAATTTGGTTGCGTTGGGCTTTACAAAGCCAGGGGTGGTG GGGAAGATGACCGATCAAATATTTTGTTTCTAG |