Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6045.t1
Gene name
Locationscaffold_15:473553..475011
Strand+
Gene length (bp)1458
Transcript length (bp)1410
Coding sequence length (bp)1410
Protein length (aa) 470

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00175 NAD_binding_1 Oxidoreductase NAD-binding domain 2.1E-33 338 445
PF00970 FAD_binding_6 Oxidoreductase FAD-binding domain 6.9E-27 230 328
PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain 1.8E-21 17 88

GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0003674 molecular_function No
GO:0003824 catalytic activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 3.47 0.92 6.02
5d_25C Five days - 25 degrees Celsius 4.96 1.57 8.34
7d_25C Seven days - 25 degrees Celsius 5.03 1.40 8.65
10d_25C Ten days - 25 degrees Celsius 5.04 1.55 8.52
7d_15C Seven days - 15 degrees Celsius 3.66 1.00 6.32
7d_30C Seven days - 30 degrees Celsius 6.53 2.28 10.77

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.429975 no
3d_25C 7d_25C 0.425021 no
3d_25C 7d_15C 0.930710 no
3d_25C 7d_30C 0.100169 no
3d_25C 10d_25C 0.401929 no
5d_25C 7d_25C 0.983077 no
5d_25C 7d_15C 0.527214 no
5d_25C 7d_30C 0.528301 no
5d_25C 10d_25C 0.978573 no
7d_25C 7d_15C 0.517085 no
7d_25C 7d_30C 0.570747 no
7d_25C 10d_25C 0.997342 no
7d_15C 7d_30C 0.136703 no
7d_15C 10d_25C 0.495714 no
7d_30C 10d_25C 0.562030 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6045.t1
MSVPETKELKVELPEYTLKDVAAHNTKGDTWMVIHGQVFDLTKYLHDHPGGPEVLLEVAGTDATADYEDVGHSED
AREIMQPFLVGTLKDAHQYVQPKTVRVVSQKAPEVANSSSSTIKTIAFTLGGLAPVFYLISQRNNLTKSLGAISH
LIPHPLKNLRLPHGGFINGFLAASAISTVLGVMVARQASRFTKIDSGFMRFPPHKKSKKVLRVDPHLARGFLDPQ
HYQRLHLVEKTELATNVYRFVFALPTATGILGLPIGQHVSIRAVVDGASITRSYTPTSNNLDRGRIELVIKCYPD
GLLSGKYLAGLTVGEEVEFRGPKGSMRYTQGLCRKIGMVAGGTGITPMFQLIRAICENDTDTTEVSLVYANRSES
DILLREELERFARQYPKNFKLWYMLDSAPEGWTYGSGYVDQAVLAKQLPAPSPDTKVMLCGPPGMVNATKKNLVA
LGFTKPGVVGKMTDQIFCF*
Coding >Pro_DTO377G3_2|g6045.t1
ATGTCCGTTCCAGAAACAAAAGAGCTCAAGGTCGAGCTGCCAGAGTATACATTGAAAGATGTGGCAGCACATAAC
ACCAAGGGTGATACCTGGATGGTGATCCACGGACAAGTCTTTGACCTCACAAAATATCTGCATGATCACCCAGGT
GGTCCAGAGGTTCTCCTCGAGGTAGCCGGTACTGATGCCACAGCAGACTATGAGGATGTTGGGCATTCTGAAGAC
GCCCGCGAGATCATGCAGCCCTTCCTGGTGGGCACTTTGAAGGATGCTCATCAGTACGTCCAGCCTAAGACAGTG
CGTGTGGTCTCCCAAAAAGCACCTGAAGTGGCCAATTCCTCATCGTCGACCATCAAAACGATCGCTTTCACTTTG
GGTGGACTGGCCCCAGTCTTTTACCTCATCAGCCAAAGAAACAATCTCACAAAGAGCCTGGGAGCCATCTCCCAC
TTGATCCCTCACCCACTGAAGAACCTACGACTACCTCACGGGGGCTTCATCAACGGCTTCTTGGCCGCTTCTGCT
ATCTCCACAGTCCTGGGTGTAATGGTAGCGCGACAGGCCAGCAGATTCACCAAGATCGACTCCGGGTTCATGCGG
TTCCCACCTCATAAGAAGTCAAAGAAGGTGCTTCGTGTCGATCCGCACCTGGCACGCGGCTTCCTCGACCCGCAA
CATTATCAACGCCTGCATCTCGTTGAAAAGACCGAACTAGCAACGAATGTCTACCGTTTCGTCTTTGCCCTGCCA
ACCGCCACAGGTATTTTGGGTCTACCCATTGGCCAACACGTCTCCATCAGAGCCGTTGTCGACGGAGCGAGTATT
ACTCGCTCATACACCCCTACCTCTAACAACCTCGACCGGGGCCGCATTGAACTCGTGATCAAATGCTATCCCGAC
GGTTTATTGAGCGGGAAGTATCTGGCCGGCTTGACTGTCGGCGAAGAAGTCGAATTCCGCGGGCCCAAGGGCTCT
ATGCGTTATACGCAAGGTCTTTGTCGCAAGATCGGCATGGTGGCCGGCGGCACAGGCATCACACCCATGTTCCAG
CTTATCCGGGCGATTTGCGAGAATGACACCGACACGACGGAGGTTAGTCTGGTTTATGCGAACCGCAGCGAGTCT
GACATTCTCTTGCGCGAAGAGCTTGAACGCTTCGCGCGCCAATACCCGAAGAACTTCAAGCTGTGGTATATGCTA
GACTCTGCGCCCGAGGGCTGGACCTATGGATCGGGATACGTGGACCAGGCAGTTCTGGCAAAGCAGCTCCCTGCG
CCTTCGCCGGACACTAAGGTGATGCTATGTGGGCCGCCCGGAATGGTCAATGCCACTAAGAAGAATTTGGTTGCG
TTGGGCTTTACAAAGCCAGGGGTGGTGGGGAAGATGACCGATCAAATATTTTGTTTCTAG
Transcript >Pro_DTO377G3_2|g6045.t1
ATGTCCGTTCCAGAAACAAAAGAGCTCAAGGTCGAGCTGCCAGAGTATACATTGAAAGATGTGGCAGCACATAAC
ACCAAGGGTGATACCTGGATGGTGATCCACGGACAAGTCTTTGACCTCACAAAATATCTGCATGATCACCCAGGT
GGTCCAGAGGTTCTCCTCGAGGTAGCCGGTACTGATGCCACAGCAGACTATGAGGATGTTGGGCATTCTGAAGAC
GCCCGCGAGATCATGCAGCCCTTCCTGGTGGGCACTTTGAAGGATGCTCATCAGTACGTCCAGCCTAAGACAGTG
CGTGTGGTCTCCCAAAAAGCACCTGAAGTGGCCAATTCCTCATCGTCGACCATCAAAACGATCGCTTTCACTTTG
GGTGGACTGGCCCCAGTCTTTTACCTCATCAGCCAAAGAAACAATCTCACAAAGAGCCTGGGAGCCATCTCCCAC
TTGATCCCTCACCCACTGAAGAACCTACGACTACCTCACGGGGGCTTCATCAACGGCTTCTTGGCCGCTTCTGCT
ATCTCCACAGTCCTGGGTGTAATGGTAGCGCGACAGGCCAGCAGATTCACCAAGATCGACTCCGGGTTCATGCGG
TTCCCACCTCATAAGAAGTCAAAGAAGGTGCTTCGTGTCGATCCGCACCTGGCACGCGGCTTCCTCGACCCGCAA
CATTATCAACGCCTGCATCTCGTTGAAAAGACCGAACTAGCAACGAATGTCTACCGTTTCGTCTTTGCCCTGCCA
ACCGCCACAGGTATTTTGGGTCTACCCATTGGCCAACACGTCTCCATCAGAGCCGTTGTCGACGGAGCGAGTATT
ACTCGCTCATACACCCCTACCTCTAACAACCTCGACCGGGGCCGCATTGAACTCGTGATCAAATGCTATCCCGAC
GGTTTATTGAGCGGGAAGTATCTGGCCGGCTTGACTGTCGGCGAAGAAGTCGAATTCCGCGGGCCCAAGGGCTCT
ATGCGTTATACGCAAGGTCTTTGTCGCAAGATCGGCATGGTGGCCGGCGGCACAGGCATCACACCCATGTTCCAG
CTTATCCGGGCGATTTGCGAGAATGACACCGACACGACGGAGGTTAGTCTGGTTTATGCGAACCGCAGCGAGTCT
GACATTCTCTTGCGCGAAGAGCTTGAACGCTTCGCGCGCCAATACCCGAAGAACTTCAAGCTGTGGTATATGCTA
GACTCTGCGCCCGAGGGCTGGACCTATGGATCGGGATACGTGGACCAGGCAGTTCTGGCAAAGCAGCTCCCTGCG
CCTTCGCCGGACACTAAGGTGATGCTATGTGGGCCGCCCGGAATGGTCAATGCCACTAAGAAGAATTTGGTTGCG
TTGGGCTTTACAAAGCCAGGGGTGGTGGGGAAGATGACCGATCAAATATTTTGTTTCTAG
Gene >Pro_DTO377G3_2|g6045.t1
ATGTCCGTTCCAGAAACAAAAGAGCTCAAGGTCGAGCTGCCAGAGTATACATTGAAAGATGTGGCAGCACATAAC
ACCAAGGGTGATACCTGGATGGTGATCCACGGACAAGGTAACTTCCCCTTAAATAATCAAAAAGACGGTGCTAAC
ATTACGACAGTCTTTGACCTCACAAAATATCTGCATGATCACCCAGGTGGTCCAGAGGTTCTCCTCGAGGTAGCC
GGTACTGATGCCACAGCAGACTATGAGGATGTTGGGCATTCTGAAGACGCCCGCGAGATCATGCAGCCCTTCCTG
GTGGGCACTTTGAAGGATGCTCATCAGTACGTCCAGCCTAAGACAGTGCGTGTGGTCTCCCAAAAAGCACCTGAA
GTGGCCAATTCCTCATCGTCGACCATCAAAACGATCGCTTTCACTTTGGGTGGACTGGCCCCAGTCTTTTACCTC
ATCAGCCAAAGAAACAATCTCACAAAGAGCCTGGGAGCCATCTCCCACTTGATCCCTCACCCACTGAAGAACCTA
CGACTACCTCACGGGGGCTTCATCAACGGCTTCTTGGCCGCTTCTGCTATCTCCACAGTCCTGGGTGTAATGGTA
GCGCGACAGGCCAGCAGATTCACCAAGATCGACTCCGGGTTCATGCGGTTCCCACCTCATAAGAAGTCAAAGAAG
GTGCTTCGTGTCGATCCGCACCTGGCACGCGGCTTCCTCGACCCGCAACATTATCAACGCCTGCATCTCGTTGAA
AAGACCGAACTAGCAACGAATGTCTACCGTTTCGTCTTTGCCCTGCCAACCGCCACAGGTATTTTGGGTCTACCC
ATTGGCCAACACGTCTCCATCAGAGCCGTTGTCGACGGAGCGAGTATTACTCGCTCATACACCCCTACCTCTAAC
AACCTCGACCGGGGCCGCATTGAACTCGTGATCAAATGCTATCCCGACGGTTTATTGAGCGGGAAGTATCTGGCC
GGCTTGACTGTCGGCGAAGAAGTCGAATTCCGCGGGCCCAAGGGCTCTATGCGTTATACGCAAGGTCTTTGTCGC
AAGATCGGCATGGTGGCCGGCGGCACAGGCATCACACCCATGTTCCAGCTTATCCGGGCGATTTGCGAGAATGAC
ACCGACACGACGGAGGTTAGTCTGGTTTATGCGAACCGCAGCGAGTCTGACATTCTCTTGCGCGAAGAGCTTGAA
CGCTTCGCGCGCCAATACCCGAAGAACTTCAAGCTGTGGTATATGCTAGACTCTGCGCCCGAGGGCTGGACCTAT
GGATCGGGATACGTGGACCAGGCAGTTCTGGCAAAGCAGCTCCCTGCGCCTTCGCCGGACACTAAGGTGATGCTA
TGTGGGCCGCCCGGAATGGTCAATGCCACTAAGAAGAATTTGGTTGCGTTGGGCTTTACAAAGCCAGGGGTGGTG
GGGAAGATGACCGATCAAATATTTTGTTTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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