© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6033.t1 |
| Gene name | |
| Location | scaffold_15:443724..445387 |
| Strand | - |
| Gene length (bp) | 1663 |
| Transcript length (bp) | 1599 |
| Coding sequence length (bp) | 1599 |
| Protein length (aa) | 533 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.3E-43 | 41 | 441 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 3.9E-11 | 71 | 208 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 94 | 116 | 22 |
| 3 | 126 | 148 | 22 |
| 4 | 160 | 182 | 22 |
| 5 | 192 | 214 | 22 |
| 6 | 234 | 256 | 22 |
| 7 | 261 | 280 | 19 |
| 8 | 301 | 323 | 22 |
| 9 | 338 | 356 | 18 |
| 10 | 361 | 383 | 22 |
| 11 | 393 | 410 | 17 |
| 12 | 423 | 445 | 22 |
| 13 | 500 | 522 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.20 | 0.04 | 2.35 |
| 5d_25C | Five days - 25 degrees Celsius | 1.31 | 0.17 | 2.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.83 | 0.00 | 1.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.75 | 0.01 | 1.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.27 | 0.00 | 2.59 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.18 | 0.46 | 3.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.912257 | no |
| 3d_25C | 7d_25C | 0.584356 | no |
| 3d_25C | 7d_15C | 0.950240 | no |
| 3d_25C | 7d_30C | 0.261769 | no |
| 3d_25C | 10d_25C | 0.476650 | no |
| 5d_25C | 7d_25C | 0.448357 | no |
| 5d_25C | 7d_15C | 0.971142 | no |
| 5d_25C | 7d_30C | 0.325310 | no |
| 5d_25C | 10d_25C | 0.353433 | no |
| 7d_25C | 7d_15C | 0.538403 | no |
| 7d_25C | 7d_30C | 0.055327 | no |
| 7d_25C | 10d_25C | 0.902974 | no |
| 7d_15C | 7d_30C | 0.350280 | no |
| 7d_15C | 10d_25C | 0.434421 | no |
| 7d_30C | 10d_25C | 0.039155 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6033.t1 MIRSIEKQLDQEATTEKPSEVKKDETHLPTGTRLLAIIVSILFAMFLVALDRTIIATAVPRIANQFNSLDDLSWY ASAYLLTSCATQLSWGKVYTFYSTKTIFLIAILIFEVGSAVCGGAPNSDAFIVGRAIAGIGSAGIFSGATVIIAQ IVPLAKRPMYVGLMGSTFGISSIIGPLMGGAFTDNVTWRWCFYINLPIGGFTMVILFLFLAVPHKPQPCTWKQQI LRLDPLGSVLFLPSVICFLLALQWGGITYPWSNGRIIALFVISGTLMIAFVGVQIRLKKDATVPPHILNQRSIIS GVVFSLCVGGGLISMLYTLPLWFQGVRGTSAVKSGIDTIPMVLALVVGAILSGSIITATGYYVPWMFIAAVFMST GAGLMTTFKVDTNHSAWIGYQVLFGIGIGTGMQQPSMAAQTILPMDEVAIGVSLMFFAQSLGGAVFIAVAQSLFQ NYLGANLPHIQGIDVAKIMAAGATGLSNAVPATKLSEVLALYNDGLQRSFIVALAVSCLMIVPALTMEWRSIKKE KSAATAA* |
| Coding | >Pro_DTO377G3_2|g6033.t1 ATGATTCGATCGATAGAAAAGCAGCTCGACCAGGAAGCTACCACCGAGAAGCCCTCGGAGGTCAAGAAAGATGAG ACTCATTTACCAACGGGGACCCGGCTGCTAGCTATTATTGTTTCTATTCTGTTCGCTATGTTTTTGGTTGCCTTG GATCGCACCATCATTGCTACAGCAGTTCCTCGCATTGCAAACCAGTTCAATTCCCTAGACGACCTCAGTTGGTAT GCGAGTGCATATCTGCTGACAAGTTGCGCCACGCAGCTATCTTGGGGCAAGGTGTACACCTTCTACTCGACCAAG ACCATCTTCCTGATCGCGATCCTCATTTTTGAAGTCGGATCGGCCGTCTGTGGTGGCGCCCCTAACTCTGATGCC TTCATTGTCGGCCGTGCGATAGCCGGGATTGGATCAGCTGGCATATTTTCCGGCGCGACAGTGATAATCGCACAG ATCGTGCCGCTGGCCAAAAGGCCCATGTATGTCGGGCTGATGGGGTCGACTTTTGGTATTTCCTCAATCATCGGA CCTTTGATGGGTGGTGCGTTCACAGACAACGTGACATGGCGTTGGTGCTTCTATATCAACTTGCCCATCGGCGGT TTCACCATGGTCATCTTGTTCCTTTTCCTGGCCGTCCCCCACAAGCCCCAACCATGCACCTGGAAGCAACAAATC CTCCGCCTCGATCCCCTGGGCAGTGTGCTATTCCTGCCCTCTGTCATCTGCTTCCTGCTCGCCCTGCAGTGGGGC GGTATAACCTATCCCTGGAGCAATGGGCGCATCATCGCGCTGTTCGTCATCTCAGGGACACTGATGATTGCCTTT GTCGGTGTGCAGATCCGGCTCAAGAAAGACGCAACAGTGCCGCCTCACATATTAAACCAGCGGAGCATCATCAGC GGAGTAGTATTTTCCCTGTGTGTCGGTGGAGGACTAATCTCTATGCTGTACACGCTCCCACTCTGGTTCCAAGGC GTGCGCGGCACATCAGCTGTGAAATCCGGCATCGACACAATTCCCATGGTGCTGGCGCTCGTTGTCGGAGCCATA CTCTCCGGGTCAATCATCACCGCAACGGGATACTACGTCCCGTGGATGTTTATTGCGGCGGTGTTCATGTCGACG GGCGCAGGGTTGATGACAACCTTCAAGGTGGACACCAACCACTCCGCCTGGATTGGATACCAGGTGTTGTTTGGC ATCGGTATCGGCACAGGAATGCAGCAGCCCTCCATGGCGGCGCAGACTATTCTCCCTATGGATGAGGTCGCCATT GGTGTCTCGCTGATGTTCTTCGCGCAGTCTCTCGGCGGAGCTGTCTTTATCGCTGTTGCTCAGTCGCTCTTCCAG AATTACCTCGGTGCAAACCTACCCCACATTCAGGGGATTGATGTGGCCAAGATTATGGCGGCTGGGGCGACAGGT CTGTCGAATGCTGTCCCTGCTACCAAGTTGAGCGAGGTTCTGGCGTTATACAATGATGGCCTCCAGCGGTCGTTC ATTGTCGCCCTGGCGGTGTCCTGTCTGATGATCGTCCCCGCGCTGACGATGGAATGGAGGTCAATCAAAAAGGAG AAATCCGCTGCCACGGCTGCTTGA |
| Transcript | >Pro_DTO377G3_2|g6033.t1 ATGATTCGATCGATAGAAAAGCAGCTCGACCAGGAAGCTACCACCGAGAAGCCCTCGGAGGTCAAGAAAGATGAG ACTCATTTACCAACGGGGACCCGGCTGCTAGCTATTATTGTTTCTATTCTGTTCGCTATGTTTTTGGTTGCCTTG GATCGCACCATCATTGCTACAGCAGTTCCTCGCATTGCAAACCAGTTCAATTCCCTAGACGACCTCAGTTGGTAT GCGAGTGCATATCTGCTGACAAGTTGCGCCACGCAGCTATCTTGGGGCAAGGTGTACACCTTCTACTCGACCAAG ACCATCTTCCTGATCGCGATCCTCATTTTTGAAGTCGGATCGGCCGTCTGTGGTGGCGCCCCTAACTCTGATGCC TTCATTGTCGGCCGTGCGATAGCCGGGATTGGATCAGCTGGCATATTTTCCGGCGCGACAGTGATAATCGCACAG ATCGTGCCGCTGGCCAAAAGGCCCATGTATGTCGGGCTGATGGGGTCGACTTTTGGTATTTCCTCAATCATCGGA CCTTTGATGGGTGGTGCGTTCACAGACAACGTGACATGGCGTTGGTGCTTCTATATCAACTTGCCCATCGGCGGT TTCACCATGGTCATCTTGTTCCTTTTCCTGGCCGTCCCCCACAAGCCCCAACCATGCACCTGGAAGCAACAAATC CTCCGCCTCGATCCCCTGGGCAGTGTGCTATTCCTGCCCTCTGTCATCTGCTTCCTGCTCGCCCTGCAGTGGGGC GGTATAACCTATCCCTGGAGCAATGGGCGCATCATCGCGCTGTTCGTCATCTCAGGGACACTGATGATTGCCTTT GTCGGTGTGCAGATCCGGCTCAAGAAAGACGCAACAGTGCCGCCTCACATATTAAACCAGCGGAGCATCATCAGC GGAGTAGTATTTTCCCTGTGTGTCGGTGGAGGACTAATCTCTATGCTGTACACGCTCCCACTCTGGTTCCAAGGC GTGCGCGGCACATCAGCTGTGAAATCCGGCATCGACACAATTCCCATGGTGCTGGCGCTCGTTGTCGGAGCCATA CTCTCCGGGTCAATCATCACCGCAACGGGATACTACGTCCCGTGGATGTTTATTGCGGCGGTGTTCATGTCGACG GGCGCAGGGTTGATGACAACCTTCAAGGTGGACACCAACCACTCCGCCTGGATTGGATACCAGGTGTTGTTTGGC ATCGGTATCGGCACAGGAATGCAGCAGCCCTCCATGGCGGCGCAGACTATTCTCCCTATGGATGAGGTCGCCATT GGTGTCTCGCTGATGTTCTTCGCGCAGTCTCTCGGCGGAGCTGTCTTTATCGCTGTTGCTCAGTCGCTCTTCCAG AATTACCTCGGTGCAAACCTACCCCACATTCAGGGGATTGATGTGGCCAAGATTATGGCGGCTGGGGCGACAGGT CTGTCGAATGCTGTCCCTGCTACCAAGTTGAGCGAGGTTCTGGCGTTATACAATGATGGCCTCCAGCGGTCGTTC ATTGTCGCCCTGGCGGTGTCCTGTCTGATGATCGTCCCCGCGCTGACGATGGAATGGAGGTCAATCAAAAAGGAG AAATCCGCTGCCACGGCTGCTTGA |
| Gene | >Pro_DTO377G3_2|g6033.t1 ATGATTCGATCGATAGAAAAGCAGCTCGACCAGGAAGCTACCACCGAGAAGCCCTCGGAGGTCAAGAAAGATGAG ACTCATTTACCAACGGGGACCCGGCTGCTAGCTATTATTGTTTCTATTCTGTTCGCTATGTTTTTGGTTGCCTTG GTATGAATGTTGCATTCTCTATTGCCCATGTAGATATATACTAACAAGACATTGAACACTATAGGATCGCACCAT CATTGCTACAGCAGTTCCTCGCATTGCAAACCAGTTCAATTCCCTAGACGACCTCAGTTGGTATGCGAGTGCATA TCTGCTGACAAGTTGCGCCACGCAGCTATCTTGGGGCAAGGTGTACACCTTCTACTCGACCAAGACCATCTTCCT GATCGCGATCCTCATTTTTGAAGTCGGATCGGCCGTCTGTGGTGGCGCCCCTAACTCTGATGCCTTCATTGTCGG CCGTGCGATAGCCGGGATTGGATCAGCTGGCATATTTTCCGGCGCGACAGTGATAATCGCACAGATCGTGCCGCT GGCCAAAAGGCCCATGTATGTCGGGCTGATGGGGTCGACTTTTGGTATTTCCTCAATCATCGGACCTTTGATGGG TGGTGCGTTCACAGACAACGTGACATGGCGTTGGTGCTTCTATATCAACTTGCCCATCGGCGGTTTCACCATGGT CATCTTGTTCCTTTTCCTGGCCGTCCCCCACAAGCCCCAACCATGCACCTGGAAGCAACAAATCCTCCGCCTCGA TCCCCTGGGCAGTGTGCTATTCCTGCCCTCTGTCATCTGCTTCCTGCTCGCCCTGCAGTGGGGCGGTATAACCTA TCCCTGGAGCAATGGGCGCATCATCGCGCTGTTCGTCATCTCAGGGACACTGATGATTGCCTTTGTCGGTGTGCA GATCCGGCTCAAGAAAGACGCAACAGTGCCGCCTCACATATTAAACCAGCGGAGCATCATCAGCGGAGTAGTATT TTCCCTGTGTGTCGGTGGAGGACTAATCTCTATGCTGTACACGCTCCCACTCTGGTTCCAAGGCGTGCGCGGCAC ATCAGCTGTGAAATCCGGCATCGACACAATTCCCATGGTGCTGGCGCTCGTTGTCGGAGCCATACTCTCCGGGTC AATCATCACCGCAACGGGATACTACGTCCCGTGGATGTTTATTGCGGCGGTGTTCATGTCGACGGGCGCAGGGTT GATGACAACCTTCAAGGTGGACACCAACCACTCCGCCTGGATTGGATACCAGGTGTTGTTTGGCATCGGTATCGG CACAGGAATGCAGCAGCCCTCCATGGCGGCGCAGACTATTCTCCCTATGGATGAGGTCGCCATTGGTGTCTCGCT GATGTTCTTCGCGCAGTCTCTCGGCGGAGCTGTCTTTATCGCTGTTGCTCAGTCGCTCTTCCAGAATTACCTCGG TGCAAACCTACCCCACATTCAGGGGATTGATGTGGCCAAGATTATGGCGGCTGGGGCGACAGGTCTGTCGAATGC TGTCCCTGCTACCAAGTTGAGCGAGGTTCTGGCGTTATACAATGATGGCCTCCAGCGGTCGTTCATTGTCGCCCT GGCGGTGTCCTGTCTGATGATCGTCCCCGCGCTGACGATGGAATGGAGGTCAATCAAAAAGGAGAAATCCGCTGC CACGGCTGCTTGA |