Protein ID | Pro_DTO377G3_2|g603.t1 |
Gene name | |
Location | scaffold_01:1547875..1550964 |
Strand | - |
Gene length (bp) | 3089 |
Transcript length (bp) | 2904 |
Coding sequence length (bp) | 2904 |
Protein length (aa) | 968 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00628 | PHD | PHD-finger | 3.8E-10 | 528 | 572 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 68 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 26.89 | 16.15 | 37.64 |
5d_25C | Five days - 25 degrees Celsius | 25.23 | 15.14 | 35.32 |
7d_25C | Seven days - 25 degrees Celsius | 22.91 | 13.53 | 32.29 |
10d_25C | Ten days - 25 degrees Celsius | 22.50 | 13.27 | 31.72 |
7d_15C | Seven days - 15 degrees Celsius | 26.49 | 15.88 | 37.10 |
7d_30C | Seven days - 30 degrees Celsius | 20.40 | 11.97 | 28.82 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.844075 | no |
3d_25C | 7d_25C | 0.552836 | no |
3d_25C | 7d_15C | 0.966574 | no |
3d_25C | 7d_30C | 0.246169 | no |
3d_25C | 10d_25C | 0.497831 | no |
5d_25C | 7d_25C | 0.747807 | no |
5d_25C | 7d_15C | 0.886426 | no |
5d_25C | 7d_30C | 0.396980 | no |
5d_25C | 10d_25C | 0.691969 | no |
7d_25C | 7d_15C | 0.607950 | no |
7d_25C | 7d_30C | 0.690279 | no |
7d_25C | 10d_25C | 0.960995 | no |
7d_15C | 7d_30C | 0.278596 | no |
7d_15C | 10d_25C | 0.544343 | no |
7d_30C | 10d_25C | 0.750101 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g603.t1 MSWSLVTSEMRENEMLYLSGEADKASKEKKDAVAAQPLPPAPTGSTQSERRQSSSKPAQRRKLQKKPPGTSKPTT QYRTMKPIGEYPSPVEYRAAGVAPPSERAHSVATVPTNVPRDEAERLSPVSGVESPPTDKGHVEIAEEAALASTS TGAETVADESIRSTTPADAATPTLPSADITHKYLAVLMSLPLRLSDKYDLVKLRGVMKFAIISSIENDNEWCVVG LLYFWSNAMDDEFKLSLIANLSENDGGDKQLQLALQTILNNSLIEAQRWYQKYVRSTANAADIPSCSESSQPAVN SVGAEPSFKVSDIYRDTSGPRVEENFLSGKSNTAPLKRPKKPCRVNENAYKRKRQWEMDPDHEEKMRAVRARLEA ESYSEAVVQYSAIRTQIGPPDAIQHPYDMENIDAGIDGDIDAFNRARSLPVPGSILDIPLVKGPEPTAPSVYSDG ASAIARKTGKPVSRRQREKAKGPEVPQRARSLSVDTTVSSLSSLSNSAYSVRFNDWSGGHEARQMPNSIEPPENS DDCHQCGKGGDLLCCDTCINSYHFECLDPPLDPKNPPQGEWHCPKCSIRNSFSTLIAHSKHYKKTEFQPPQDIKE HFHGVDEGIVFDGDYARNLKHQRYYKAAPHLPRLTKAPKQDGPTIYANPMLLREYDNKGDCIRCSKCGFTSQGIH PIITCDYCPCRFHLDCLDPPRAHPPNPKVGWMCPNHVTPDDMIATKEINGSNERTRRVRRTKNMAYIDCDIMLPD DPNQSLFDEDWRDKRARFLGGDVVLNFITAVKEDHHEREKEYARIVERKCLELTKQLTSDYLNRAENAGITNNIA QNGLPAEFTQNVSHAVNNMIAGAPVSTEEFDAATTLLSMATSQPPAVGEGHIAEAAGPTSPVAQKPLSRIDEEST LGSSHAPTSPPLGTSHPPNASSDAESHHSDSELLPRIPVFNRNKRSRADDHGSAGERAQKRQYTKSK* |
Coding | >Pro_DTO377G3_2|g603.t1 ATGAGCTGGTCACTGGTCACTTCTGAGATGAGGGAGAACGAGATGTTGTATCTTTCAGGCGAAGCCGACAAGGCA TCGAAGGAAAAGAAAGATGCTGTTGCTGCCCAGCCCCTTCCGCCTGCCCCTACGGGGTCCACTCAGTCCGAACGC CGTCAGAGCTCTTCCAAACCCGCGCAACGACGGAAGCTTCAGAAGAAGCCCCCGGGCACTTCGAAGCCCACCACC CAGTATCGGACAATGAAACCGATTGGGGAATACCCATCGCCCGTGGAGTACCGAGCTGCTGGCGTGGCTCCTCCG TCTGAACGGGCCCACAGCGTCGCGACCGTGCCGACCAACGTCCCGCGCGACGAAGCTGAGCGCCTTTCCCCCGTT AGCGGGGTTGAGAGCCCGCCGACTGACAAGGGTCATGTTGAAATCGCCGAAGAAGCGGCACTTGCCTCAACCTCG ACTGGGGCCGAGACCGTGGCCGATGAGTCTATTCGCAGCACCACCCCAGCCGATGCGGCCACTCCTACCCTCCCG AGCGCGGACATCACCCACAAGTACCTCGCCGTGCTGATGTCTCTTCCTTTGCGCCTCTCCGACAAATATGATCTT GTCAAACTACGGGGCGTCATGAAGTTCGCCATAATCAGCTCAATCGAGAACGACAACGAGTGGTGTGTCGTTGGC CTTCTTTACTTCTGGTCCAATGCCATGGATGATGAATTCAAACTCTCTTTGATTGCCAACCTCTCCGAAAATGAC GGAGGAGACAAACAGTTGCAACTTGCTCTCCAAACGATCCTTAACAATTCTCTGATAGAAGCCCAAAGGTGGTAT CAGAAATACGTTCGCTCTACGGCCAATGCAGCCGATATTCCTTCCTGCAGCGAATCAAGTCAGCCAGCTGTCAAT TCTGTTGGTGCAGAGCCTAGCTTCAAGGTCTCCGACATCTATCGCGACACAAGTGGTCCTCGGGTTGAAGAAAAC TTCCTGAGCGGCAAATCAAATACCGCTCCGCTCAAGAGGCCCAAGAAGCCATGCCGCGTCAACGAGAATGCCTAC AAGCGTAAGCGCCAGTGGGAAATGGATCCTGATCATGAGGAAAAGATGCGTGCTGTGCGTGCTCGTCTCGAAGCA GAGTCTTACTCGGAGGCGGTTGTCCAGTACAGTGCAATCCGAACTCAGATCGGTCCACCAGATGCAATCCAGCAT CCCTACGACATGGAGAACATTGATGCGGGTATCGATGGGGACATCGACGCGTTCAATCGTGCGCGTTCTCTCCCT GTTCCGGGTTCAATCCTCGATATACCTCTTGTAAAGGGTCCGGAGCCCACGGCTCCCTCTGTCTATTCAGATGGT GCTTCGGCTATCGCTCGCAAGACTGGGAAGCCCGTCTCGCGACGTCAGAGAGAAAAGGCCAAGGGCCCTGAGGTC CCACAGCGTGCACGGTCGCTGTCTGTTGATACCACAGTCTCAAGTCTCTCGTCACTTTCGAATTCTGCTTACTCG GTCCGATTCAATGATTGGTCTGGCGGCCATGAAGCACGCCAAATGCCGAATTCTATTGAACCCCCCGAGAACAGC GACGACTGCCACCAATGTGGAAAAGGTGGCGATTTGCTCTGCTGCGACACATGCATCAACTCATACCATTTCGAA TGCTTGGATCCTCCCTTGGATCCCAAGAATCCTCCGCAGGGAGAGTGGCATTGCCCCAAGTGCTCCATTCGCAAC AGCTTCTCGACCTTGATTGCACACTCCAAACACTACAAGAAGACAGAGTTCCAACCTCCTCAGGATATCAAGGAG CATTTCCATGGAGTGGATGAAGGAATTGTGTTTGATGGCGACTATGCCCGGAATTTAAAGCATCAACGCTACTAC AAGGCCGCGCCCCACCTGCCGCGGCTGACTAAAGCACCGAAGCAAGACGGCCCTACCATTTACGCGAATCCCATG CTTCTCCGAGAATACGACAACAAGGGAGACTGCATCCGTTGCTCCAAGTGTGGTTTTACATCCCAAGGTATACAT CCCATTATTACTTGCGACTACTGTCCTTGCCGCTTCCATCTGGATTGTCTTGATCCTCCCCGCGCACATCCCCCT AACCCCAAGGTCGGGTGGATGTGTCCTAACCATGTCACTCCTGACGATATGATTGCCACCAAGGAGATTAATGGC AGCAACGAGCGTACGCGCCGTGTTCGCCGAACCAAGAACATGGCGTACATTGATTGTGACATCATGCTTCCTGAC GACCCAAATCAGAGTTTGTTTGATGAAGACTGGAGAGACAAAAGGGCCCGTTTCCTCGGAGGCGATGTCGTTTTG AACTTCATCACTGCTGTCAAGGAAGATCATCACGAACGTGAAAAGGAGTATGCACGAATTGTCGAGCGAAAGTGC TTGGAGTTGACCAAGCAACTCACCAGCGATTACCTCAACCGCGCTGAAAACGCTGGGATCACCAACAACATCGCA CAGAACGGTCTTCCCGCGGAGTTCACCCAGAATGTTTCTCACGCTGTTAACAACATGATAGCTGGCGCTCCTGTT TCCACTGAAGAATTCGACGCTGCCACTACTCTCCTCAGCATGGCTACAAGCCAGCCTCCTGCTGTCGGCGAAGGT CACATCGCCGAAGCTGCCGGGCCTACCTCGCCCGTTGCTCAGAAGCCTCTGTCTCGCATTGACGAGGAGTCTACC TTGGGCTCTTCTCATGCTCCCACCTCTCCTCCCCTCGGCACCTCTCACCCTCCCAACGCATCTTCGGATGCCGAG TCCCACCATTCGGACTCCGAGCTTCTCCCCCGGATCCCTGTGTTCAATCGGAACAAGCGATCTCGCGCTGATGAC CATGGATCAGCCGGAGAGCGGGCGCAAAAGCGCCAATACACCAAGTCCAAGTGA |
Transcript | >Pro_DTO377G3_2|g603.t1 ATGAGCTGGTCACTGGTCACTTCTGAGATGAGGGAGAACGAGATGTTGTATCTTTCAGGCGAAGCCGACAAGGCA TCGAAGGAAAAGAAAGATGCTGTTGCTGCCCAGCCCCTTCCGCCTGCCCCTACGGGGTCCACTCAGTCCGAACGC CGTCAGAGCTCTTCCAAACCCGCGCAACGACGGAAGCTTCAGAAGAAGCCCCCGGGCACTTCGAAGCCCACCACC CAGTATCGGACAATGAAACCGATTGGGGAATACCCATCGCCCGTGGAGTACCGAGCTGCTGGCGTGGCTCCTCCG TCTGAACGGGCCCACAGCGTCGCGACCGTGCCGACCAACGTCCCGCGCGACGAAGCTGAGCGCCTTTCCCCCGTT AGCGGGGTTGAGAGCCCGCCGACTGACAAGGGTCATGTTGAAATCGCCGAAGAAGCGGCACTTGCCTCAACCTCG ACTGGGGCCGAGACCGTGGCCGATGAGTCTATTCGCAGCACCACCCCAGCCGATGCGGCCACTCCTACCCTCCCG AGCGCGGACATCACCCACAAGTACCTCGCCGTGCTGATGTCTCTTCCTTTGCGCCTCTCCGACAAATATGATCTT GTCAAACTACGGGGCGTCATGAAGTTCGCCATAATCAGCTCAATCGAGAACGACAACGAGTGGTGTGTCGTTGGC CTTCTTTACTTCTGGTCCAATGCCATGGATGATGAATTCAAACTCTCTTTGATTGCCAACCTCTCCGAAAATGAC GGAGGAGACAAACAGTTGCAACTTGCTCTCCAAACGATCCTTAACAATTCTCTGATAGAAGCCCAAAGGTGGTAT CAGAAATACGTTCGCTCTACGGCCAATGCAGCCGATATTCCTTCCTGCAGCGAATCAAGTCAGCCAGCTGTCAAT TCTGTTGGTGCAGAGCCTAGCTTCAAGGTCTCCGACATCTATCGCGACACAAGTGGTCCTCGGGTTGAAGAAAAC TTCCTGAGCGGCAAATCAAATACCGCTCCGCTCAAGAGGCCCAAGAAGCCATGCCGCGTCAACGAGAATGCCTAC AAGCGTAAGCGCCAGTGGGAAATGGATCCTGATCATGAGGAAAAGATGCGTGCTGTGCGTGCTCGTCTCGAAGCA GAGTCTTACTCGGAGGCGGTTGTCCAGTACAGTGCAATCCGAACTCAGATCGGTCCACCAGATGCAATCCAGCAT CCCTACGACATGGAGAACATTGATGCGGGTATCGATGGGGACATCGACGCGTTCAATCGTGCGCGTTCTCTCCCT GTTCCGGGTTCAATCCTCGATATACCTCTTGTAAAGGGTCCGGAGCCCACGGCTCCCTCTGTCTATTCAGATGGT GCTTCGGCTATCGCTCGCAAGACTGGGAAGCCCGTCTCGCGACGTCAGAGAGAAAAGGCCAAGGGCCCTGAGGTC CCACAGCGTGCACGGTCGCTGTCTGTTGATACCACAGTCTCAAGTCTCTCGTCACTTTCGAATTCTGCTTACTCG GTCCGATTCAATGATTGGTCTGGCGGCCATGAAGCACGCCAAATGCCGAATTCTATTGAACCCCCCGAGAACAGC GACGACTGCCACCAATGTGGAAAAGGTGGCGATTTGCTCTGCTGCGACACATGCATCAACTCATACCATTTCGAA TGCTTGGATCCTCCCTTGGATCCCAAGAATCCTCCGCAGGGAGAGTGGCATTGCCCCAAGTGCTCCATTCGCAAC AGCTTCTCGACCTTGATTGCACACTCCAAACACTACAAGAAGACAGAGTTCCAACCTCCTCAGGATATCAAGGAG CATTTCCATGGAGTGGATGAAGGAATTGTGTTTGATGGCGACTATGCCCGGAATTTAAAGCATCAACGCTACTAC AAGGCCGCGCCCCACCTGCCGCGGCTGACTAAAGCACCGAAGCAAGACGGCCCTACCATTTACGCGAATCCCATG CTTCTCCGAGAATACGACAACAAGGGAGACTGCATCCGTTGCTCCAAGTGTGGTTTTACATCCCAAGGTATACAT CCCATTATTACTTGCGACTACTGTCCTTGCCGCTTCCATCTGGATTGTCTTGATCCTCCCCGCGCACATCCCCCT AACCCCAAGGTCGGGTGGATGTGTCCTAACCATGTCACTCCTGACGATATGATTGCCACCAAGGAGATTAATGGC AGCAACGAGCGTACGCGCCGTGTTCGCCGAACCAAGAACATGGCGTACATTGATTGTGACATCATGCTTCCTGAC GACCCAAATCAGAGTTTGTTTGATGAAGACTGGAGAGACAAAAGGGCCCGTTTCCTCGGAGGCGATGTCGTTTTG AACTTCATCACTGCTGTCAAGGAAGATCATCACGAACGTGAAAAGGAGTATGCACGAATTGTCGAGCGAAAGTGC TTGGAGTTGACCAAGCAACTCACCAGCGATTACCTCAACCGCGCTGAAAACGCTGGGATCACCAACAACATCGCA CAGAACGGTCTTCCCGCGGAGTTCACCCAGAATGTTTCTCACGCTGTTAACAACATGATAGCTGGCGCTCCTGTT TCCACTGAAGAATTCGACGCTGCCACTACTCTCCTCAGCATGGCTACAAGCCAGCCTCCTGCTGTCGGCGAAGGT CACATCGCCGAAGCTGCCGGGCCTACCTCGCCCGTTGCTCAGAAGCCTCTGTCTCGCATTGACGAGGAGTCTACC TTGGGCTCTTCTCATGCTCCCACCTCTCCTCCCCTCGGCACCTCTCACCCTCCCAACGCATCTTCGGATGCCGAG TCCCACCATTCGGACTCCGAGCTTCTCCCCCGGATCCCTGTGTTCAATCGGAACAAGCGATCTCGCGCTGATGAC CATGGATCAGCCGGAGAGCGGGCGCAAAAGCGCCAATACACCAAGTCCAAGTGA |
Gene | >Pro_DTO377G3_2|g603.t1 ATGAGCTGGTCACTGGTCACTTCTGAGATGAGGGAGAACGAGATGTTGTATCTTTCAGGTGAAACTGAGGGATTA CCCCACATTTTTTTAAACTCACCTCTAGATGAGAGCAAAAACTAACTTATTCAAATAGGCGAAGCCGACAAGGCA TCGAAGGAAAAGAAAGATGCTGTTGCTGCCCAGTACGTTGACCCCAGGAAGTTAGGGCATGGAGCGCGTGGCACT AACCCTACCAGGCCCCTTCCGCCTGCCCCTACGGGGTCCACTCAGTCCGAACGCCGTCAGAGCTCTTCCAAACCC GCGCAACGACGGAAGCTTCAGAAGAAGCCCCCGGGCACTTCGAAGCCCACCACCCAGTATCGGACAATGAAACCG ATTGGGGAATACCCATCGCCCGTGGAGTACCGAGCTGCTGGCGTGGCTCCTCCGTCTGAACGGGCCCACAGCGTC GCGACCGTGCCGACCAACGTCCCGCGCGACGAAGCTGAGCGCCTTTCCCCCGTTAGCGGGGTTGAGAGCCCGCCG ACTGACAAGGGTCATGTTGAAATCGCCGAAGAAGCGGCACTTGCCTCAACCTCGACTGGGGCCGAGACCGTGGCC GATGAGTCTATTCGCAGCACCACCCCAGCCGATGCGGCCACTCCTACCCTCCCGAGCGCGGACATCACCCACAAG TACCTCGCCGTGCTGATGTCTCTTCCTTTGCGCCTCTCCGACAAATATGATCTTGTCAAACTACGGGGCGTCATG AAGTTCGCCATAATCAGCTCAATCGAGAACGACAACGAGTGGTGTGTCGTTGGCCTTCTTTACTTCTGGTCCAAT GCCATGGATGATGAATTCAAACTCTCTTTGATTGCCAACCTCTCCGAAAATGACGGAGGAGACAAACAGTTGCAA CTTGCTCTCCAAACGATCCTTAACAATTCTCTGATAGAAGCCCAAAGGTGGTATCAGAAATACGTTCGCTCTACG GCCAATGCAGCCGATATTCCTTCCTGCAGCGAATCAAGTCAGCCAGCTGTCAATTCTGTTGGTGCAGAGCCTAGC TTCAAGGTCTCCGACATCTATCGCGACACAAGTGGTCCTCGGGTTGAAGAAAACTTCCTGAGCGGCAAATCAAAT ACCGCTCCGCTCAAGAGGCCCAAGAAGCCATGCCGCGTCAACGAGAATGCCTACAAGCGTAAGCGCCAGTGGGAA ATGGATCCTGATCATGAGGAAAAGATGCGTGCTGTGCGTGCTCGTCTCGAAGCAGAGTCTTACTCGGAGGCGGTT GTCCAGTACAGTGCAATCCGAACTCAGATCGGTCCACCAGATGCAATCCAGCATCCCTACGACATGGAGAACATT GATGCGGGTATCGATGGGGACATCGACGCGTTCAATCGTGCGCGTTCTCTCCCTGTTCCGGGTTCAATCCTCGAT ATACCTCTTGTAAAGGGTCCGGAGCCCACGGCTCCCTCTGTCTATTCAGATGGTGCTTCGGCTATCGCTCGCAAG ACTGGGAAGCCCGTCTCGCGACGTCAGAGAGAAAAGGCCAAGGGCCCTGAGGTCCCACAGCGTGCACGGTCGCTG TCTGTTGATACCACAGTCTCAAGTCTCTCGTCACTTTCGAATTCTGCTTACTCGGTCCGATTCAATGATTGGTCT GGCGGCCATGAAGCACGCCAAATGCCGAATTCTATGTATGTGATTTCTTGGTGTGGCTCGGCTAGTTCTATGCTA ATATGACACCTTACAGTGAACCCCCCGAGAACAGCGACGACTGCCACCAATGTGGAAAAGGTGGCGATTTGCTCT GCTGCGACACATGCATCAACTCATACCATTTCGAATGCTTGGATCCTCCCTTGGATCCCAAGAATCCTCCGCAGG GAGAGTGGCATTGCCCCAAGTGCTCCATTCGCAACAGCTTCTCGACCTTGATTGCACACTCCAAACACTACAAGA AGACAGAGTTCCAACCTCCTCAGGATATCAAGGAGCATTTCCATGGAGTGGATGAAGGAATTGTGTTTGATGGCG ACTATGCCCGGAATTTAAAGCATCAACGCTACTACAAGGCCGCGCCCCACCTGCCGCGGCTGACTAAAGCACCGA AGCAAGACGGCCCTACCATTTACGCGAATCCCATGCTTCTCCGAGAATACGACAACAAGGGAGACTGCATCCGTT GCTCCAAGTGTGGTTTTACATCCCAAGGTATACATCCCATTATTACTTGCGACTACTGTCCTTGCCGCTTCCATC TGGATTGTCTTGATCCTCCCCGCGCACATCCCCCTAACCCCAAGGTCGGGTGGATGTGTCCTAACCATGTCACTC CTGACGATATGATTGCCACCAAGGAGATTAATGGCAGCAACGAGCGTACGCGCCGTGTTCGCCGAACCAAGAACA TGGCGTACATTGATTGTGACATCATGCTTCCTGACGACCCAAATCAGAGTTTGTTTGATGAAGACTGGAGAGACA AAAGGGCCCGTTTCCTCGGAGGCGATGTCGTTTTGAACTTCATCACTGCTGTCAAGGAAGATCATCACGAACGTG AAAAGGAGTATGCACGAATTGTCGAGCGAAAGTGCTTGGAGTTGACCAAGCAACTCACCAGCGATTACCTCAACC GCGCTGAAAACGCTGGGATCACCAACAACATCGCACAGAACGGTCTTCCCGCGGAGTTCACCCAGAATGTTTCTC ACGCTGTTAACAACATGATAGCTGGCGCTCCTGTTTCCACTGAAGAATTCGACGCTGCCACTACTCTCCTCAGCA TGGCTACAAGCCAGCCTCCTGCTGTCGGCGAAGGTCACATCGCCGAAGCTGCCGGGCCTACCTCGCCCGTTGCTC AGAAGCCTCTGTCTCGCATTGACGAGGAGTCTACCTTGGGCTCTTCTCATGCTCCCACCTCTCCTCCCCTCGGCA CCTCTCACCCTCCCAACGCATCTTCGGATGCCGAGTCCCACCATTCGGACTCCGAGCTTCTCCCCCGGATCCCTG TGTTCAATCGGAACAAGCGATCTCGCGCTGATGACCATGGATCAGCCGGAGAGCGGGCGCAAAAGCGCCAATACA CCAAGTCCAAGTGA |