© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6028.t1 |
| Gene name | |
| Location | scaffold_15:429828..431977 |
| Strand | + |
| Gene length (bp) | 2149 |
| Transcript length (bp) | 1590 |
| Coding sequence length (bp) | 1590 |
| Protein length (aa) | 530 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09284 | RhgB_N | Rhamnogalacturonan lyase B, N-terminal | 2.9E-109 | 23 | 271 |
| PF14683 | CBM-like | Polysaccharide lyase family 4, domain III | 5.4E-42 | 362 | 527 |
| PF14686 | fn3_3 | Polysaccharide lyase family 4, domain II | 2.2E-22 | 277 | 350 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides | Yes |
| GO:0030246 | carbohydrate binding | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016835 | carbon-oxygen lyase activity | No |
| GO:0005488 | binding | No |
| GO:0008152 | metabolic process | No |
| GO:0016829 | lyase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.47 | 7.51 | 23.44 |
| 5d_25C | Five days - 25 degrees Celsius | 16.56 | 8.19 | 24.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.32 | 8.03 | 24.61 |
| 10d_25C | Ten days - 25 degrees Celsius | 14.50 | 6.92 | 22.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 14.38 | 6.81 | 21.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.06 | 7.23 | 22.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.871265 | no |
| 3d_25C | 7d_25C | 0.899911 | no |
| 3d_25C | 7d_15C | 0.862021 | no |
| 3d_25C | 7d_30C | 0.953825 | no |
| 3d_25C | 10d_25C | 0.878563 | no |
| 5d_25C | 7d_25C | 0.975132 | no |
| 5d_25C | 7d_15C | 0.698377 | no |
| 5d_25C | 7d_30C | 0.813068 | no |
| 5d_25C | 10d_25C | 0.722069 | no |
| 7d_25C | 7d_15C | 0.736504 | no |
| 7d_25C | 7d_30C | 0.847047 | no |
| 7d_25C | 10d_25C | 0.758271 | no |
| 7d_15C | 7d_30C | 0.916121 | no |
| 7d_15C | 10d_25C | 0.986052 | no |
| 7d_30C | 10d_25C | 0.933705 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6028.t1 MMFFKSLAIASLALWAKQASAAFGITTSTASYVIDAGSTNPLKFTVSRTNCDITSINYYGSELQYQSTGSHIGSG LGSATVSATQSGDYIKVTCETSTLTHYYVVHNGDSTIHMATYTTAEPTIGELRYIARLNSALLPNEEPFGVVSNI AGGTVVEGEDVFLVSGQTRSKFYSSERFIDDHIHCVSGSAHRVCMILNQYETSAGGPFHRDINTNNVGSYTGLYW YMNSGHVQTETYRQGLHGPYSMVFSRSGTPSSTLDTSFFADLSIKGYVATSARGYVTGTATGADSTFKWVVHWYN SAAQYWTYTSSSGAFTSPAMKPGTYTMVYYQGEYVVATSSVTVTAGSTTSKSISGSVKTGTTVFKIGDWDGTPNG FLNAANQLRMHPSDTRMSSWSPTTYTVGSSQVSSFPMALFKSVNSPLTIKFTASSSQTGAATLRIGTTLSFASGR PQVVFNNYSGATPAAPTNLNSRGVTRGAYRGFGEVYDVSIPAGTIVAGTNTITISVASGSSGDTYLSPNFIFDCV ELFQ* |
| Coding | >Pro_DTO377G3_2|g6028.t1 ATGATGTTTTTCAAGTCCTTGGCCATTGCTTCGCTAGCACTTTGGGCTAAGCAGGCATCCGCGGCCTTCGGAATC ACTACTAGCACTGCTTCCTATGTGATTGATGCTGGCTCTACAAACCCGCTTAAATTTACCGTCAGCCGGACAAAC TGTGACATTACTTCGATCAATTACTATGGATCCGAGCTTCAATACCAGTCGACTGGATCTCATATCGGATCGGGT CTTGGTAGCGCAACTGTGTCTGCCACGCAGAGTGGCGACTACATCAAGGTGACCTGCGAAACATCCACCTTGACA CACTACTATGTTGTCCACAACGGAGATTCGACCATCCACATGGCGACATACACAACCGCAGAACCTACAATTGGA GAACTTCGATATATCGCGCGCCTGAATTCAGCCCTGCTGCCGAATGAAGAGCCATTCGGTGTTGTCTCTAATATT GCAGGTGGCACTGTCGTCGAGGGAGAGGATGTGTTCTTGGTTAGTGGACAAACGCGAAGCAAGTTCTACTCGAGC GAACGGTTTATTGATGACCACATCCACTGTGTCTCTGGAAGCGCGCACCGTGTCTGCATGATCTTAAATCAATAT GAGACATCTGCTGGCGGACCTTTCCATCGTGATATCAACACCAACAATGTTGGTTCTTATACTGGCCTATACTGG TACATGAACTCCGGACACGTTCAGACCGAGACCTACCGCCAGGGCCTGCACGGCCCATACTCGATGGTCTTCAGC CGAAGCGGTACCCCCAGTTCCACCCTTGACACATCGTTCTTTGCCGATCTCAGTATCAAGGGATACGTCGCCACA TCTGCGAGAGGCTATGTTACGGGTACTGCAACCGGGGCTGACTCGACTTTCAAATGGGTGGTTCACTGGTATAAC TCTGCCGCACAGTACTGGACCTACACTTCGTCTTCCGGAGCTTTCACCTCCCCTGCTATGAAGCCCGGCACTTAC ACCATGGTATACTACCAGGGCGAATATGTCGTTGCCACCTCGTCAGTGACTGTTACTGCCGGATCAACCACATCG AAGAGTATCTCCGGGTCTGTGAAGACCGGAACGACAGTCTTCAAGATTGGAGACTGGGATGGAACACCGAACGGC TTCCTCAACGCGGCCAACCAGCTCCGTATGCATCCCTCCGATACCCGCATGTCTTCCTGGTCCCCGACCACCTAC ACAGTCGGCAGCTCTCAAGTCTCTTCTTTCCCCATGGCCCTCTTCAAATCGGTCAATTCACCTTTGACGATTAAA TTCACGGCATCATCTTCGCAGACCGGAGCTGCGACGCTGAGAATTGGCACAACCCTCTCCTTTGCGTCTGGCCGG CCCCAGGTTGTGTTCAACAACTATTCCGGCGCCACCCCGGCTGCCCCGACTAACCTCAACTCCCGTGGCGTCACT CGCGGTGCGTATAGAGGGTTTGGCGAGGTTTACGACGTTTCGATACCGGCTGGAACTATCGTCGCTGGAACTAAC ACTATCACCATCAGCGTTGCTTCTGGTAGCTCTGGAGACACTTACCTGAGCCCGAACTTTATCTTCGATTGCGTG GAGCTCTTCCAGTAA |
| Transcript | >Pro_DTO377G3_2|g6028.t1 ATGATGTTTTTCAAGTCCTTGGCCATTGCTTCGCTAGCACTTTGGGCTAAGCAGGCATCCGCGGCCTTCGGAATC ACTACTAGCACTGCTTCCTATGTGATTGATGCTGGCTCTACAAACCCGCTTAAATTTACCGTCAGCCGGACAAAC TGTGACATTACTTCGATCAATTACTATGGATCCGAGCTTCAATACCAGTCGACTGGATCTCATATCGGATCGGGT CTTGGTAGCGCAACTGTGTCTGCCACGCAGAGTGGCGACTACATCAAGGTGACCTGCGAAACATCCACCTTGACA CACTACTATGTTGTCCACAACGGAGATTCGACCATCCACATGGCGACATACACAACCGCAGAACCTACAATTGGA GAACTTCGATATATCGCGCGCCTGAATTCAGCCCTGCTGCCGAATGAAGAGCCATTCGGTGTTGTCTCTAATATT GCAGGTGGCACTGTCGTCGAGGGAGAGGATGTGTTCTTGGTTAGTGGACAAACGCGAAGCAAGTTCTACTCGAGC GAACGGTTTATTGATGACCACATCCACTGTGTCTCTGGAAGCGCGCACCGTGTCTGCATGATCTTAAATCAATAT GAGACATCTGCTGGCGGACCTTTCCATCGTGATATCAACACCAACAATGTTGGTTCTTATACTGGCCTATACTGG TACATGAACTCCGGACACGTTCAGACCGAGACCTACCGCCAGGGCCTGCACGGCCCATACTCGATGGTCTTCAGC CGAAGCGGTACCCCCAGTTCCACCCTTGACACATCGTTCTTTGCCGATCTCAGTATCAAGGGATACGTCGCCACA TCTGCGAGAGGCTATGTTACGGGTACTGCAACCGGGGCTGACTCGACTTTCAAATGGGTGGTTCACTGGTATAAC TCTGCCGCACAGTACTGGACCTACACTTCGTCTTCCGGAGCTTTCACCTCCCCTGCTATGAAGCCCGGCACTTAC ACCATGGTATACTACCAGGGCGAATATGTCGTTGCCACCTCGTCAGTGACTGTTACTGCCGGATCAACCACATCG AAGAGTATCTCCGGGTCTGTGAAGACCGGAACGACAGTCTTCAAGATTGGAGACTGGGATGGAACACCGAACGGC TTCCTCAACGCGGCCAACCAGCTCCGTATGCATCCCTCCGATACCCGCATGTCTTCCTGGTCCCCGACCACCTAC ACAGTCGGCAGCTCTCAAGTCTCTTCTTTCCCCATGGCCCTCTTCAAATCGGTCAATTCACCTTTGACGATTAAA TTCACGGCATCATCTTCGCAGACCGGAGCTGCGACGCTGAGAATTGGCACAACCCTCTCCTTTGCGTCTGGCCGG CCCCAGGTTGTGTTCAACAACTATTCCGGCGCCACCCCGGCTGCCCCGACTAACCTCAACTCCCGTGGCGTCACT CGCGGTGCGTATAGAGGGTTTGGCGAGGTTTACGACGTTTCGATACCGGCTGGAACTATCGTCGCTGGAACTAAC ACTATCACCATCAGCGTTGCTTCTGGTAGCTCTGGAGACACTTACCTGAGCCCGAACTTTATCTTCGATTGCGTG GAGCTCTTCCAGTAA |
| Gene | >Pro_DTO377G3_2|g6028.t1 ATGATGTTTTTCAAGTCCTTGGCCATTGCTTCGCTAGCACTTTGGGCTAAGCAGGCATCCGCGGCCTTCGGAATC ACTACTAGCACTGCTTCCTATGTGATTGATGCTGGCTCTACAAACCCGCTTAAATTTACCGTCAGCCGGACAAAC TGTGACATTACTTCGATCAATTACTATGGATCCGAGCTTCAATACCAGTCGACTGGATCTCATATCGGATCGGGT CTTGGTAGCGCAACTGTGTCTGCCACGCAGAGTGGTGAGTTGAGAAACAAGACGTCTGTTGGAAAATATTCTGAT CAGTATAGGCGACTACATCAAGGTGACCTGCGAAACATCCACCTTGACACACTACTATGTTGTCCACAACGGAGA TTCGACCATCCACATGGCGACATACACAACCGCAGGTTAGTGTTGTTCGTGCGCAAATGTGTTTTTTATACTCAT TATAATCAGAACCTACAATTGGAGAACTTCGATATATCGCGCGCCTGAATTCAGCCCTGCTGCCGAATGAAGAGC CATTCGGTGTTGTCTCTAATATTGCAGGTGGCACTGTCGTCGAGGGAGAGGATGTGGTACGTTTTTTTCTGAAGC TTTTTTTCAATACAAACAGCTGACACATATTAGTTCTTGGTTAGTGGACAAACGCGAAGCAAGTTCTACTCGAGC GAACGGTTTATTGATGACCACATCCACTGTAAGAATACCTCTACCCTGGCCGATGCGAGTCGATTTAACACAAAC AGGTGTCTCTGGAAGCGCGCACCGTGTCTGCATGATCTTAAATCAATATGAGACATCTGCTGGCGGACCTTTCCA TCGGTAAGCTCCTCATACAGCATGACTTGATCCAGACTAACATGCACCAGTGATATCAACACCAACAATGTTGGT TCTTATACTGGCCTATACTGGTACATGGTATGTGGAATCTGTCGCTCAATCAGTAACTGCCTCTTACTCTATACA GAACTCCGGACACGTTCAGACCGAGACCTACCGCCAGGGCCTGCACGGCCCATACTCGATGGTCTTCAGCCGAAG CGGTACCCCCAGTTCCACCCTTGACACATCGTTCTTTGCCGATCTCAGTATCAAGGGATACGTCGCCACATCTGC GAGAGGCTATGTTACGGGTACTGCAACCGGGGCTGACTCGACTTTCAAATGGGTGGTTCACTGGTAGGTCCGATG CAATACCTGGATGAGTACATATCTAACTCCAAGACAGGTATAACTCTGCCGCACAGTACTGGACCTACACTTCGT CTTCCGGAGCTTTCACCTCCCCTGCTATGAAGCCCGGCACTTACACCATGGTATACTACCAGGGCGAATATGTCG TTGCCACCTCGTCAGTGACTGTTACTGCCGGATCAACCACATCGAAGAGTATCTCCGGGTCTGTGAAGACCGGAA CGACAGTCTTCAAGATTGGAGACTGGGATGGAACGTAAGTTCATTGATTTTAACCCACATAATTGTTCCGATATT GACTGCCCATAGACCGAACGGCTTCCTCAACGCGGCCAACCAGCTCCGTATGCATCCCTCCGATACCCGCATGTC TTCCTGGTCCCCGACCACCTACACAGTCGGCAGCTCTCAAGTCTCTTCTTTCCCCATGGCCCTCTTCAAATCGGT CAATTCACCTTTGACGATTAAATTCACGGCATCATCTTCGCAGACCGGAGCTGCGACGCTGAGAATTGGCACAAC CCTCTCCTTTGCGTCTGGCCGGCCCCAGGTTGTGGTATGTTCAAGCACATTCACTTTCTATACTCTTAGCATGTA TCTAACTTTTACACAGTTCAACAACTATTCCGGCGCCACCCCGGCTGCCCCGACTAACCTCAACTCCCGTGGCGT CACTCGCGGTGCGTATAGAGGGTTTGGCGAGGTTTACGACGTTTCGATACCGGCTGGAACTATCGTCGCTGGAAC TAACACTGTAAGGACTTTTGAGCCCAGTCAGATGATATGATGCTAATCCGGCCTAGATCACCATCAGCGTTGCTT CTGGTAGCTCTGGAGACACTTACCTGAGCCCGAACTTTGTGAGTATCTTTCTGGTTATCTGGTCTTTCCGATGTA AGCTTACCTGTCTCAATAGATCTTCGATTGCGTGGAGCTCTTCCAGTAA |