© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g602.t1 |
| Gene name | |
| Location | scaffold_01:1545729..1547361 |
| Strand | + |
| Gene length (bp) | 1632 |
| Transcript length (bp) | 1269 |
| Coding sequence length (bp) | 1269 |
| Protein length (aa) | 423 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03388 | Lectin_leg-like | Legume-like lectin family | 9.4E-28 | 34 | 229 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 388 | 410 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 64.46 | 38.46 | 90.45 |
| 5d_25C | Five days - 25 degrees Celsius | 41.91 | 23.29 | 60.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 33.82 | 17.84 | 49.79 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.00 | 10.65 | 33.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 40.80 | 21.10 | 60.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 53.70 | 29.36 | 78.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.057409 | no |
| 3d_25C | 7d_25C | 0.005626 | yes |
| 3d_25C | 7d_15C | 0.064497 | no |
| 3d_25C | 7d_30C | 0.512339 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.465947 | no |
| 5d_25C | 7d_15C | 0.946744 | no |
| 5d_25C | 7d_30C | 0.360790 | no |
| 5d_25C | 10d_25C | 0.012303 | yes |
| 7d_25C | 7d_15C | 0.561253 | no |
| 7d_25C | 7d_30C | 0.066960 | no |
| 7d_25C | 10d_25C | 0.129357 | no |
| 7d_15C | 7d_30C | 0.334475 | no |
| 7d_15C | 10d_25C | 0.021163 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g602.t1 MMRTLASLALLAVGATAQIIESSSFGTGQTISPNQDSIPGWAIGGEGHEPHVLSDKLILTPPYPGNTRGSAWAQS PVSQSEWSAELQFRASGPERAGGILQLWYTKDGQSRIGTSSIYTVGQFDGFALVIDTHGGRGGSVRGFLNDGTID YKSHNSPDTLAFGHCDYSYRNLGRPSILKLKHTSSIFEVTVDDKLCFSTDKVALPAGNTFGITAATPENPDSFEI FKFILESAAGQGSTIPSNQGSTPQQPIPDQIPNQPAQPIINSGTEATMNGLAAQIADVSGRIQLAGKATNTILQE LKNQAQKADQRHAEILQKSLAQDRQLAQFDTRLTRVEQLLQALQTDLQSKDYSGRFNQLHETLRSSHLSLSENLQ GHLRSVITASSPRMGFFIFLLIAFQVILAISYVIYKRRRANMPKKFL* |
| Coding | >Pro_DTO377G3_2|g602.t1 ATGATGAGAACATTAGCTTCCCTGGCATTGCTTGCCGTAGGGGCCACAGCTCAAATTATTGAAAGCTCAAGCTTC GGCACTGGCCAAACGATATCACCAAACCAAGACTCCATCCCCGGATGGGCAATTGGAGGAGAGGGCCATGAACCG CACGTTCTATCAGACAAGCTCATCTTAACGCCACCGTACCCTGGAAACACAAGGGGATCAGCTTGGGCACAGAGT CCAGTCTCTCAGTCGGAATGGTCAGCAGAGCTCCAATTCCGAGCAAGCGGACCAGAACGAGCAGGTGGAATCCTG CAGTTATGGTATACCAAGGATGGCCAGTCCCGTATTGGTACCTCGAGCATCTATACTGTCGGCCAATTTGACGGA TTTGCTTTAGTAATCGATACGCATGGTGGAAGAGGTGGTAGTGTCCGTGGGTTCCTGAACGACGGTACCATCGAT TACAAAAGCCACAATAGCCCAGACACCTTAGCCTTTGGCCACTGCGACTACTCCTACCGTAACTTAGGCCGTCCA TCAATTCTCAAACTCAAGCACACCAGCTCCATCTTTGAAGTCACCGTTGACGACAAGCTTTGCTTTTCAACTGAC AAGGTCGCCCTGCCCGCTGGGAACACTTTCGGCATCACAGCAGCCACCCCCGAAAACCCAGACTCATTTGAGATC TTCAAGTTCATCCTCGAGTCCGCCGCAGGCCAAGGCTCGACAATTCCCTCCAACCAAGGCAGCACCCCCCAGCAG CCAATCCCCGATCAAATTCCTAACCAGCCCGCCCAACCCATCATCAACTCCGGTACAGAAGCCACCATGAACGGC TTAGCTGCCCAGATCGCCGACGTCAGCGGTCGCATCCAGCTTGCGGGCAAGGCCACCAACACCATCCTCCAGGAG CTGAAGAACCAGGCCCAGAAGGCCGACCAGCGCCACGCAGAGATTCTCCAGAAGTCCCTGGCTCAGGACCGCCAG CTCGCCCAGTTCGACACCCGACTCACGCGGGTCGAGCAGCTGCTCCAGGCCCTCCAGACCGACCTCCAGAGCAAG GACTACAGTGGACGCTTCAACCAGCTCCACGAGACGCTGCGCTCTTCCCACCTCAGCTTGAGCGAGAACCTGCAG GGTCACCTGCGGAGTGTCATTACGGCCTCCAGCCCACGCATGGGCTTCTTCATCTTCTTGCTGATCGCGTTCCAG GTGATCCTCGCGATCTCCTACGTCATCTACAAGCGTCGCCGGGCCAACATGCCCAAGAAGTTCCTTTAA |
| Transcript | >Pro_DTO377G3_2|g602.t1 ATGATGAGAACATTAGCTTCCCTGGCATTGCTTGCCGTAGGGGCCACAGCTCAAATTATTGAAAGCTCAAGCTTC GGCACTGGCCAAACGATATCACCAAACCAAGACTCCATCCCCGGATGGGCAATTGGAGGAGAGGGCCATGAACCG CACGTTCTATCAGACAAGCTCATCTTAACGCCACCGTACCCTGGAAACACAAGGGGATCAGCTTGGGCACAGAGT CCAGTCTCTCAGTCGGAATGGTCAGCAGAGCTCCAATTCCGAGCAAGCGGACCAGAACGAGCAGGTGGAATCCTG CAGTTATGGTATACCAAGGATGGCCAGTCCCGTATTGGTACCTCGAGCATCTATACTGTCGGCCAATTTGACGGA TTTGCTTTAGTAATCGATACGCATGGTGGAAGAGGTGGTAGTGTCCGTGGGTTCCTGAACGACGGTACCATCGAT TACAAAAGCCACAATAGCCCAGACACCTTAGCCTTTGGCCACTGCGACTACTCCTACCGTAACTTAGGCCGTCCA TCAATTCTCAAACTCAAGCACACCAGCTCCATCTTTGAAGTCACCGTTGACGACAAGCTTTGCTTTTCAACTGAC AAGGTCGCCCTGCCCGCTGGGAACACTTTCGGCATCACAGCAGCCACCCCCGAAAACCCAGACTCATTTGAGATC TTCAAGTTCATCCTCGAGTCCGCCGCAGGCCAAGGCTCGACAATTCCCTCCAACCAAGGCAGCACCCCCCAGCAG CCAATCCCCGATCAAATTCCTAACCAGCCCGCCCAACCCATCATCAACTCCGGTACAGAAGCCACCATGAACGGC TTAGCTGCCCAGATCGCCGACGTCAGCGGTCGCATCCAGCTTGCGGGCAAGGCCACCAACACCATCCTCCAGGAG CTGAAGAACCAGGCCCAGAAGGCCGACCAGCGCCACGCAGAGATTCTCCAGAAGTCCCTGGCTCAGGACCGCCAG CTCGCCCAGTTCGACACCCGACTCACGCGGGTCGAGCAGCTGCTCCAGGCCCTCCAGACCGACCTCCAGAGCAAG GACTACAGTGGACGCTTCAACCAGCTCCACGAGACGCTGCGCTCTTCCCACCTCAGCTTGAGCGAGAACCTGCAG GGTCACCTGCGGAGTGTCATTACGGCCTCCAGCCCACGCATGGGCTTCTTCATCTTCTTGCTGATCGCGTTCCAG GTGATCCTCGCGATCTCCTACGTCATCTACAAGCGTCGCCGGGCCAACATGCCCAAGAAGTTCCTTTAA |
| Gene | >Pro_DTO377G3_2|g602.t1 ATGATGAGAACATTAGCTTCCCTGGCATTGCTTGCCGTAGGGGCCACAGCTCAAATTATTGAAAGCTCAAGCTTC GGCACTGGCCAAACGTTAGTATAATGTCCACGTTCAGTCTTTGGGTTATGGTTGTCTGACCTTAGACCAGGATAT CACCAAACCAAGACTCCATCCCCGGATGGGCAATTGGAGGAGAGGGCCATGAACCGCACGTTGTGAGTCGGCCTA TAACAATTGCTGGTGAATTGCTCTAACAGCTGTATAGCTATCAGACAAGCTCATCTTAACGCCACCGTACCCTGG AAACACAAGGGGATCAGCTTGGGCACAGAGTCCGTAAGTGAAGGGCTTCAAACCGTGATATTGGACACCAGATAC TAACATGAGTATAGAGTCTCTCAGTCGGAATGGTCAGCAGAGCTCCAATTCCGAGCAAGCGGACCAGAACGAGCA GGTGGAATCCTGCAGTTATGGTATACCAAGGATGGCCAGTCCCGTATTGGTACCTCGAGCATCTATACTGTCGGC CAATTTGACGGATTTGCTTTAGTAATCGATACGCATGGTGGAAGAGTGCGTATTAACCCTGTCGCGTATTGTCGT GCCGTATTGATCATTCGTTACTAACCTCTCCTATAGGGTGGTAGTGTCCGTGGGTTCCTGAACGACGGTACCATC GATTACAAAAGCCACAATAGCCCAGACACCTTAGCCTTTGGCCACTGCGACTACTCCTACCGTAACTTAGGCCGT CCATCAATTCTCAAACTCAAGCACACCAGCTCCATCTTTGAAGTCACCGTTGACGACAAGCTTTGCTTTTCAACT GACAAGGTATGTATACATCATGTCCCGCCGGCGCCATGTCGCAGCCATCGTAAACATACTGATCTGAGTAGGTCG CCCTGCCCGCTGGGAACACTTTCGGCATCACAGCAGCCACCCCCGAAAACCCAGACTCATTTGAGATCTTCAAGT TCATCCTCGAGTCCGCCGCAGGCCAAGGCTCGACAATTCCCTCCAACCAAGGCAGCACCCCCCAGCAGCCAATCC CCGATCAAATTCCTAACCAGCCCGCCCAACCCATCATCAACTCCGGTACAGAAGCCACCATGAACGGCTTAGCTG CCCAGATCGCCGACGTCAGCGGTCGCATCCAGCTTGCGGGCAAGGCCACCAACACCATCCTCCAGGAGCTGAAGA ACCAGGCCCAGAAGGCCGACCAGCGCCACGCAGAGATTCTCCAGAAGTCCCTGGCTCAGGACCGCCAGCTCGCCC AGTTCGACACCCGACTCACGCGGGTCGAGCAGCTGCTCCAGGCCCTCCAGACCGACCTCCAGAGCAAGGACTACA GTGGACGCTTCAACCAGCTCCACGAGACGCTGCGCTCTTCCCACCTCAGCTTGAGCGAGAACCTGCAGGGTCACC TGCGGAGTGGTAAGTTCGCTTGCTTCGTTCAGACGATATATTAGTTCACTCTGCTAATTGCTTTTCTCTCACATA ATAGTCATTACGGCCTCCAGCCCACGCATGGGCTTCTTCATCTTCTTGCTGATCGCGTTCCAGGTGATCCTCGCG ATCTCCTACGTCATCTACAAGCGTCGCCGGGCCAACATGCCCAAGAAGTTCCTTTAA |