© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6007.t1 |
| Gene name | |
| Location | scaffold_15:389491..391930 |
| Strand | - |
| Gene length (bp) | 2439 |
| Transcript length (bp) | 2184 |
| Coding sequence length (bp) | 2184 |
| Protein length (aa) | 728 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00199 | Catalase | Catalase | 2.2E-162 | 57 | 439 |
| PF18011 | Catalase_C | C-terminal domain found in long catalases | 1.3E-52 | 567 | 724 |
| PF06628 | Catalase-rel | Catalase-related immune-responsive | 4.0E-17 | 473 | 536 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004096 | catalase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0004601 | peroxidase activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016209 | antioxidant activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 59.70 | 35.73 | 83.67 |
| 5d_25C | Five days - 25 degrees Celsius | 45.93 | 26.77 | 65.10 |
| 7d_25C | Seven days - 25 degrees Celsius | 42.26 | 23.52 | 61.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.52 | 10.10 | 28.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.65 | 13.56 | 43.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 48.65 | 27.17 | 70.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.288014 | no |
| 3d_25C | 7d_25C | 0.146409 | no |
| 3d_25C | 7d_15C | 0.004450 | yes |
| 3d_25C | 7d_30C | 0.458522 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.799123 | no |
| 5d_25C | 7d_15C | 0.075175 | no |
| 5d_25C | 7d_30C | 0.871914 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.165042 | no |
| 7d_25C | 7d_30C | 0.659007 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.051659 | no |
| 7d_15C | 10d_25C | 0.193221 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6007.t1 MRVLALVTGLVGIANAACPYMTGEAGPLERRGDGDASSTEEFLSQFYLKDQDVFLTSDVGGPIEDQNSLSAGERG ATLLEDFIFRQKIQRFDHERVPERAVHARGAGAHGTFTSYGDWSNLTAASFLSAKGKQTPMFTRFSTVAGSRGSA DTARDVHGFATRFYTDEGNFDIVGNNIPVFFIQDAILFPDLIHAVKPRGDSEIPQAATAHDSAWDFFSQQPSALH TLLWAMAGHGIPRSFRHVDGFGVHTFRLVTDDGKTKLVKFHWKGLQGKASFVWEEAQQTAGKNADFMRQDLFEAI EAGRFPEWELGVQIMEEDDQLRFGFDLLDPTKIVPEELVPVTKLGKMQLNRNPLNYFAETEQVMFQPGHIVRGVD FTEDPLLQGRIFSYLDTQLNRHGGPNFEQLPINRPRVPIHNNNRDGAGQMFIPLNPNAYSPNTENNGSPKQANQT VGNGFFTAPDRTSSGKLQRTVSSTFEDVWSQPRLFWNSLVPAEKQFIVDAIRFETSNVKSSVVRNNVIIQLNRIS NDLATRVAKAIGIDAPKPDPTFYHDNTTAHIGAFGQKLAKLDGLKVGLLASVDKPASIAQGAKLQSALSAVGVDV VVVAERFADGVNQTYSASDAVQFDAVVVADGAEGLFASKSITSVPNKASGASSLYPAGRPLDILLDAFRFGKTVG ALGKGSAALRSALISTDRDGVYTASNAGSAFVKDIKEGLRTFKFLDRFALDE* |
| Coding | >Pro_DTO377G3_2|g6007.t1 ATGCGTGTGCTTGCCCTCGTTACGGGTCTTGTTGGCATTGCCAATGCTGCCTGTCCTTATATGACTGGCGAAGCT GGCCCCCTCGAGAGACGAGGTGATGGAGATGCTTCTTCCACCGAGGAATTTCTCTCCCAATTCTACCTCAAGGAC CAAGATGTCTTTCTGACCTCCGATGTTGGCGGCCCGATCGAGGACCAAAACAGTCTCAGCGCAGGAGAGCGTGGA GCCACCCTGCTTGAGGATTTCATTTTCCGCCAGAAGATCCAACGCTTCGACCATGAACGGGTACCGGAACGCGCC GTTCATGCTCGAGGCGCCGGCGCCCACGGAACATTCACCTCGTACGGCGACTGGTCCAACCTGACAGCCGCGTCT TTCCTTTCTGCCAAAGGCAAACAAACCCCGATGTTCACGCGCTTCTCTACTGTTGCTGGCAGTCGCGGAAGCGCC GATACTGCGCGAGATGTCCACGGCTTTGCGACTCGCTTCTATACTGATGAAGGGAACTTCGATATTGTTGGAAAT AACATCCCCGTTTTCTTCATCCAGGATGCTATCTTGTTCCCCGATCTCATTCACGCCGTCAAGCCCCGTGGCGAT AGCGAGATCCCTCAGGCTGCTACCGCGCACGACTCGGCTTGGGACTTCTTCAGTCAGCAGCCTAGTGCACTTCAC ACCCTTCTTTGGGCAATGGCTGGCCACGGTATTCCTCGGTCTTTCCGTCATGTTGATGGTTTCGGTGTGCACACC TTCCGTCTAGTGACTGACGATGGAAAGACTAAGCTTGTCAAGTTCCACTGGAAGGGACTACAGGGCAAGGCTAGT TTCGTGTGGGAGGAAGCACAGCAGACCGCTGGTAAAAATGCGGACTTTATGCGTCAGGATCTCTTCGAAGCTATC GAAGCTGGACGTTTCCCCGAGTGGGAGCTTGGTGTTCAAATCATGGAGGAAGACGACCAGCTTCGGTTTGGGTTT GATCTTTTGGATCCTACCAAGATTGTCCCAGAGGAACTCGTTCCTGTCACCAAGCTAGGCAAGATGCAACTGAAC CGAAACCCCCTGAACTACTTTGCTGAAACTGAGCAAGTCATGTTCCAACCGGGCCATATCGTCCGCGGCGTCGAT TTCACCGAGGACCCCCTCCTCCAAGGCCGTATCTTCTCCTACCTAGACACCCAACTCAACCGTCACGGCGGCCCC AACTTCGAGCAGCTGCCCATCAACCGGCCCCGTGTACCAATCCACAACAACAACCGCGACGGAGCAGGCCAAATG TTCATCCCCCTAAACCCAAACGCCTACTCCCCCAACACAGAAAACAACGGCTCCCCAAAACAAGCCAATCAAACC GTAGGCAACGGCTTCTTCACCGCACCCGACCGCACATCAAGCGGCAAGCTCCAACGCACCGTCAGCTCTACCTTT GAAGACGTCTGGTCCCAGCCACGCCTATTCTGGAACTCGCTCGTACCCGCCGAGAAGCAATTCATTGTAGACGCG ATCCGATTCGAGACATCCAACGTCAAGAGCAGCGTCGTGCGCAACAACGTCATCATCCAGCTAAACCGCATCAGC AACGACCTCGCGACGCGCGTCGCAAAGGCCATTGGCATTGATGCGCCGAAGCCAGATCCAACCTTTTACCACGAC AACACGACCGCGCATATCGGCGCCTTCGGACAGAAACTCGCCAAACTAGATGGGCTGAAAGTTGGACTCCTTGCG TCTGTCGATAAGCCGGCGTCTATTGCGCAGGGCGCGAAGCTGCAGTCTGCGCTTTCTGCTGTGGGCGTTGATGTC GTGGTTGTTGCGGAGAGGTTTGCGGATGGTGTTAATCAGACGTATTCTGCGTCGGACGCAGTGCAGTTCGATGCT GTTGTTGTCGCGGATGGTGCGGAGGGCCTGTTTGCCTCCAAGTCGATTACTAGCGTGCCGAATAAGGCTTCTGGT GCGTCGTCTTTGTATCCCGCTGGTCGGCCTTTGGATATTCTGCTCGATGCTTTCCGGTTCGGGAAGACGGTTGGT GCGCTCGGTAAGGGCTCGGCTGCGCTACGCTCTGCACTCATTTCTACGGACCGCGATGGTGTGTACACTGCTAGC AATGCTGGGAGTGCCTTTGTCAAAGATATAAAGGAGGGACTTCGGACCTTCAAGTTCTTGGATCGGTTCGCGCTT GATGAGTAG |
| Transcript | >Pro_DTO377G3_2|g6007.t1 ATGCGTGTGCTTGCCCTCGTTACGGGTCTTGTTGGCATTGCCAATGCTGCCTGTCCTTATATGACTGGCGAAGCT GGCCCCCTCGAGAGACGAGGTGATGGAGATGCTTCTTCCACCGAGGAATTTCTCTCCCAATTCTACCTCAAGGAC CAAGATGTCTTTCTGACCTCCGATGTTGGCGGCCCGATCGAGGACCAAAACAGTCTCAGCGCAGGAGAGCGTGGA GCCACCCTGCTTGAGGATTTCATTTTCCGCCAGAAGATCCAACGCTTCGACCATGAACGGGTACCGGAACGCGCC GTTCATGCTCGAGGCGCCGGCGCCCACGGAACATTCACCTCGTACGGCGACTGGTCCAACCTGACAGCCGCGTCT TTCCTTTCTGCCAAAGGCAAACAAACCCCGATGTTCACGCGCTTCTCTACTGTTGCTGGCAGTCGCGGAAGCGCC GATACTGCGCGAGATGTCCACGGCTTTGCGACTCGCTTCTATACTGATGAAGGGAACTTCGATATTGTTGGAAAT AACATCCCCGTTTTCTTCATCCAGGATGCTATCTTGTTCCCCGATCTCATTCACGCCGTCAAGCCCCGTGGCGAT AGCGAGATCCCTCAGGCTGCTACCGCGCACGACTCGGCTTGGGACTTCTTCAGTCAGCAGCCTAGTGCACTTCAC ACCCTTCTTTGGGCAATGGCTGGCCACGGTATTCCTCGGTCTTTCCGTCATGTTGATGGTTTCGGTGTGCACACC TTCCGTCTAGTGACTGACGATGGAAAGACTAAGCTTGTCAAGTTCCACTGGAAGGGACTACAGGGCAAGGCTAGT TTCGTGTGGGAGGAAGCACAGCAGACCGCTGGTAAAAATGCGGACTTTATGCGTCAGGATCTCTTCGAAGCTATC GAAGCTGGACGTTTCCCCGAGTGGGAGCTTGGTGTTCAAATCATGGAGGAAGACGACCAGCTTCGGTTTGGGTTT GATCTTTTGGATCCTACCAAGATTGTCCCAGAGGAACTCGTTCCTGTCACCAAGCTAGGCAAGATGCAACTGAAC CGAAACCCCCTGAACTACTTTGCTGAAACTGAGCAAGTCATGTTCCAACCGGGCCATATCGTCCGCGGCGTCGAT TTCACCGAGGACCCCCTCCTCCAAGGCCGTATCTTCTCCTACCTAGACACCCAACTCAACCGTCACGGCGGCCCC AACTTCGAGCAGCTGCCCATCAACCGGCCCCGTGTACCAATCCACAACAACAACCGCGACGGAGCAGGCCAAATG TTCATCCCCCTAAACCCAAACGCCTACTCCCCCAACACAGAAAACAACGGCTCCCCAAAACAAGCCAATCAAACC GTAGGCAACGGCTTCTTCACCGCACCCGACCGCACATCAAGCGGCAAGCTCCAACGCACCGTCAGCTCTACCTTT GAAGACGTCTGGTCCCAGCCACGCCTATTCTGGAACTCGCTCGTACCCGCCGAGAAGCAATTCATTGTAGACGCG ATCCGATTCGAGACATCCAACGTCAAGAGCAGCGTCGTGCGCAACAACGTCATCATCCAGCTAAACCGCATCAGC AACGACCTCGCGACGCGCGTCGCAAAGGCCATTGGCATTGATGCGCCGAAGCCAGATCCAACCTTTTACCACGAC AACACGACCGCGCATATCGGCGCCTTCGGACAGAAACTCGCCAAACTAGATGGGCTGAAAGTTGGACTCCTTGCG TCTGTCGATAAGCCGGCGTCTATTGCGCAGGGCGCGAAGCTGCAGTCTGCGCTTTCTGCTGTGGGCGTTGATGTC GTGGTTGTTGCGGAGAGGTTTGCGGATGGTGTTAATCAGACGTATTCTGCGTCGGACGCAGTGCAGTTCGATGCT GTTGTTGTCGCGGATGGTGCGGAGGGCCTGTTTGCCTCCAAGTCGATTACTAGCGTGCCGAATAAGGCTTCTGGT GCGTCGTCTTTGTATCCCGCTGGTCGGCCTTTGGATATTCTGCTCGATGCTTTCCGGTTCGGGAAGACGGTTGGT GCGCTCGGTAAGGGCTCGGCTGCGCTACGCTCTGCACTCATTTCTACGGACCGCGATGGTGTGTACACTGCTAGC AATGCTGGGAGTGCCTTTGTCAAAGATATAAAGGAGGGACTTCGGACCTTCAAGTTCTTGGATCGGTTCGCGCTT GATGAGTAG |
| Gene | >Pro_DTO377G3_2|g6007.t1 ATGCGTGTGCTTGCCCTCGTTACGGGTCTTGTTGGCATTGCCAATGCTGCCTGTCCTTATATGACTGGCGAAGCT GGCCCCCTCGAGAGACGAGGTGATGGAGATGCTTCTTCCACCGAGGAATTTCTCTCCCAATTCTACCTCAAGGAC CAAGATGTCTTTCTGACCTCCGATGTTGGCGGCCCGATCGAGGACCAAAACAGTCTCAGCGCAGGAGAGCGTGGA GCCACCCTGCTTGAGGATTTCATTTTCCGCCAGAAGATCCAACGCTTCGACCATGAACGGGTATGTGTTCCACGT TTTTAATCGAAGTTCCAACGCTCATATCTGTTTTTCAAGGTACCGGAACGCGCCGTTCATGCTCGAGGCGCCGGC GCCCACGGAACATTCACCTCGTACGGCGACTGGTCCAACCTGACAGCCGCGTCTTTCCTTTCTGCCAAAGGCAAA CAAACCCCGATGTTCACGCGCTTCTCTACTGTTGCTGGCAGTCGCGGAAGCGCCGATACTGCGCGAGATGTCCAC GGCTTTGCGACTCGCTTCTATACTGATGAAGGGAACTTCGGTACGGCAGATCTTTTTTTGACGAAAGTACACAAC TGATTTGGATCTAGATATTGTTGGAAATAACATCCCCGTTTTCTTCATCCAGGATGCTATCTTGTTCCCCGATCT CATTCACGCCGTCAAGCCCCGTGGCGATAGCGAGATCCCTCAGGCTGCTACCGCGCACGACTCGGCTTGGGACTT CTTCAGTCAGCAGCCTAGTGCACTTCACACCCTTCTTTGGGCAATGGCTGGCCACGGTATTCCTCGGTCTTTCCG TCATGTTGATGGTTTCGGTGTGCACACCTTCCGTCTAGTGACTGACGATGGAAAGACTAAGCTTGTCAAGTTCCA CTGGAAGGGACTACAGGGCAAGGCTAGTTTCGTGTGGGAGGAAGCACAGCAGACCGCTGGTAAAAATGCGGACTT TATGCGTCAGGATCTCTTCGAAGCTATCGAAGCTGGACGTTTCCCCGAGTGGGAGGTAGGTGATAACCCCATATC CATCGCAATTCTTGCTAATTTTTTGCTAGCTTGGTGTTCAAATCATGGAGGAAGACGACCAGCTTCGGTTTGGGT TTGATCTTTTGGATCCTACCAAGATTGTCCCAGAGGAACTCGTTCCTGTCACCAAGCTAGGCAAGATGCAACTGA ACCGAAACCCCCTGAACTACTTTGCTGAAACTGAGCAAGTCATGGTACGTCCCAACCCACCATCACCACTTACAA TACTAATTTCTTAGTTCCAACCGGGCCATATCGTCCGCGGCGTCGATTTCACCGAGGACCCCCTCCTCCAAGGCC GTATCTTCTCCTACCTAGACACCCAACTCAACCGTCACGGCGGCCCCAACTTCGAGCAGCTGCCCATCAACCGGC CCCGTGTACCAATCCACAACAACAACCGCGACGGAGCAGGTACGTCCCACCACCAAACCCACCCCATCCTCCAAT CCCTCTTTCTAACAAACCCCAGGCCAAATGTTCATCCCCCTAAACCCAAACGCCTACTCCCCCAACACAGAAAAC AACGGCTCCCCAAAACAAGCCAATCAAACCGTAGGCAACGGCTTCTTCACCGCACCCGACCGCACATCAAGCGGC AAGCTCCAACGCACCGTCAGCTCTACCTTTGAAGACGTCTGGTCCCAGCCACGCCTATTCTGGAACTCGCTCGTA CCCGCCGAGAAGCAATTCATTGTAGACGCGATCCGATTCGAGACATCCAACGTCAAGAGCAGCGTCGTGCGCAAC AACGTCATCATCCAGCTAAACCGCATCAGCAACGACCTCGCGACGCGCGTCGCAAAGGCCATTGGCATTGATGCG CCGAAGCCAGATCCAACCTTTTACCACGACAACACGACCGCGCATATCGGCGCCTTCGGACAGAAACTCGCCAAA CTAGATGGGCTGAAAGTTGGACTCCTTGCGTCTGTCGATAAGCCGGCGTCTATTGCGCAGGGCGCGAAGCTGCAG TCTGCGCTTTCTGCTGTGGGCGTTGATGTCGTGGTTGTTGCGGAGAGGTTTGCGGATGGTGTTAATCAGACGTAT TCTGCGTCGGACGCAGTGCAGTTCGATGCTGTTGTTGTCGCGGATGGTGCGGAGGGCCTGTTTGCCTCCAAGTCG ATTACTAGCGTGCCGAATAAGGCTTCTGGTGCGTCGTCTTTGTATCCCGCTGGTCGGCCTTTGGATATTCTGCTC GATGCTTTCCGGTTCGGGAAGACGGTTGGTGCGCTCGGTAAGGGCTCGGCTGCGCTACGCTCTGCACTCATTTCT ACGGACCGCGATGGTGTGTACACTGCTAGCAATGCTGGGAGTGCCTTTGTCAAAGATATAAAGGAGGGACTTCGG ACCTTCAAGTTCTTGGATCGGTTCGCGCTTGATGAGTAG |