© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6004.t1 |
| Gene name | |
| Location | scaffold_15:381675..382368 |
| Strand | + |
| Gene length (bp) | 693 |
| Transcript length (bp) | 630 |
| Coding sequence length (bp) | 630 |
| Protein length (aa) | 210 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 2.9E-07 | 14 | 38 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 74.01 | 39.18 | 108.84 |
| 5d_25C | Five days - 25 degrees Celsius | 86.41 | 47.36 | 125.46 |
| 7d_25C | Seven days - 25 degrees Celsius | 97.32 | 54.61 | 140.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 131.24 | 76.97 | 185.51 |
| 7d_15C | Seven days - 15 degrees Celsius | 73.49 | 38.80 | 108.18 |
| 7d_30C | Seven days - 30 degrees Celsius | 92.98 | 51.51 | 134.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.630056 | no |
| 3d_25C | 7d_25C | 0.328654 | no |
| 3d_25C | 7d_15C | 0.987062 | no |
| 3d_25C | 7d_30C | 0.442225 | no |
| 3d_25C | 10d_25C | 0.015833 | yes |
| 5d_25C | 7d_25C | 0.717408 | no |
| 5d_25C | 7d_15C | 0.608056 | no |
| 5d_25C | 7d_30C | 0.837601 | no |
| 5d_25C | 10d_25C | 0.072817 | no |
| 7d_25C | 7d_15C | 0.307944 | no |
| 7d_25C | 7d_30C | 0.904079 | no |
| 7d_25C | 10d_25C | 0.227409 | no |
| 7d_15C | 7d_30C | 0.423782 | no |
| 7d_15C | 10d_25C | 0.012609 | yes |
| 7d_30C | 10d_25C | 0.164015 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6004.t1 MANYLASIFGTEQDKVNCSFYYKIGACRHGDRCSRKHVKPSYSQTILMPNMYQNPAYDPKNKMNPSQMQNHFDAF YEDVWCELCKYGELEELVICDNNNDHLIGNVYGRFKYEEDAQAACDAINSRWYAARPIYCELSPVTDFREACCRL NSGEGCVRGGFCNFIHRKDPTPDLDRELRLSTKKWLKERGRDPRSASRSPSPEPTRRRY* |
| Coding | >Pro_DTO377G3_2|g6004.t1 ATGGCCAACTACCTTGCATCCATCTTCGGTACCGAGCAGGACAAGGTCAATTGTTCGTTCTACTACAAAATCGGC GCGTGCCGACACGGCGACCGCTGCTCTCGCAAGCATGTTAAGCCTTCGTACTCGCAAACCATTCTCATGCCGAAC ATGTACCAGAACCCGGCTTACGACCCCAAGAACAAGATGAACCCCAGCCAAATGCAGAACCATTTCGACGCCTTC TACGAGGACGTATGGTGTGAGTTGTGCAAGTACGGCGAGCTGGAAGAGTTGGTCATCTGCGACAACAACAACGAC CACCTCATTGGTAACGTCTACGGCCGATTCAAATACGAAGAAGATGCGCAGGCAGCCTGTGACGCGATAAACTCC CGTTGGTACGCAGCGCGACCTATCTACTGCGAGTTATCACCCGTTACCGATTTCCGAGAAGCCTGTTGTCGGCTC AATAGCGGCGAAGGGTGTGTACGAGGGGGCTTCTGCAATTTCATTCACCGGAAAGATCCGACACCCGACCTCGAC CGCGAGCTGCGACTGAGCACCAAGAAGTGGCTCAAGGAGCGCGGCAGAGATCCTCGCAGCGCCAGCCGCAGTCCT AGCCCCGAGCCCACCCGGCGCAGATACTAG |
| Transcript | >Pro_DTO377G3_2|g6004.t1 ATGGCCAACTACCTTGCATCCATCTTCGGTACCGAGCAGGACAAGGTCAATTGTTCGTTCTACTACAAAATCGGC GCGTGCCGACACGGCGACCGCTGCTCTCGCAAGCATGTTAAGCCTTCGTACTCGCAAACCATTCTCATGCCGAAC ATGTACCAGAACCCGGCTTACGACCCCAAGAACAAGATGAACCCCAGCCAAATGCAGAACCATTTCGACGCCTTC TACGAGGACGTATGGTGTGAGTTGTGCAAGTACGGCGAGCTGGAAGAGTTGGTCATCTGCGACAACAACAACGAC CACCTCATTGGTAACGTCTACGGCCGATTCAAATACGAAGAAGATGCGCAGGCAGCCTGTGACGCGATAAACTCC CGTTGGTACGCAGCGCGACCTATCTACTGCGAGTTATCACCCGTTACCGATTTCCGAGAAGCCTGTTGTCGGCTC AATAGCGGCGAAGGGTGTGTACGAGGGGGCTTCTGCAATTTCATTCACCGGAAAGATCCGACACCCGACCTCGAC CGCGAGCTGCGACTGAGCACCAAGAAGTGGCTCAAGGAGCGCGGCAGAGATCCTCGCAGCGCCAGCCGCAGTCCT AGCCCCGAGCCCACCCGGCGCAGATACTAG |
| Gene | >Pro_DTO377G3_2|g6004.t1 ATGGCCAACTACCTTGCATCCATCTTCGGTACCGAGCAGGACAAGGTCAATTGTTCGTTCTACTACAAAATCGGC GCGTGCCGACACGGCGACCGCTGCTCTCGCAAGCATGTTAAGCCTTCGTACTCGCAAACCATTCTCATGCCGAAC ATGTACCAGAACCCGGCTTACGACCCCAAGAACAAGATGAACCCCAGCCAAATGCAGAACCATTTCGACGCCTTC TACGAGGACGTATGGTGTGAGTTGTGCAAGTACGGCGAGCTGGAAGAGTTGGTCATCTGCGACAACAACAACGAC CGTAAGTAGTGCTCTCTTCAAAATTTGTGTCTGAATCTACTGACATCTGTTTTCGCGACAATAGACCTCATTGGT AACGTCTACGGCCGATTCAAATACGAAGAAGATGCGCAGGCAGCCTGTGACGCGATAAACTCCCGTTGGTACGCA GCGCGACCTATCTACTGCGAGTTATCACCCGTTACCGATTTCCGAGAAGCCTGTTGTCGGCTCAATAGCGGCGAA GGGTGTGTACGAGGGGGCTTCTGCAATTTCATTCACCGGAAAGATCCGACACCCGACCTCGACCGCGAGCTGCGA CTGAGCACCAAGAAGTGGCTCAAGGAGCGCGGCAGAGATCCTCGCAGCGCCAGCCGCAGTCCTAGCCCCGAGCCC ACCCGGCGCAGATACTAG |