Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6004.t1
Gene name
Locationscaffold_15:381675..382368
Strand+
Gene length (bp)693
Transcript length (bp)630
Coding sequence length (bp)630
Protein length (aa) 210

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2.9E-07 14 38

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0005488 binding No
GO:0043167 ion binding No
GO:0043169 cation binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6004.t1
MANYLASIFGTEQDKVNCSFYYKIGACRHGDRCSRKHVKPSYSQTILMPNMYQNPAYDPKNKMNPSQMQNHFDAF
YEDVWCELCKYGELEELVICDNNNDHLIGNVYGRFKYEEDAQAACDAINSRWYAARPIYCELSPVTDFREACCRL
NSGEGCVRGGFCNFIHRKDPTPDLDRELRLSTKKWLKERGRDPRSASRSPSPEPTRRRY*
Coding >Pro_DTO377G3_2|g6004.t1
ATGGCCAACTACCTTGCATCCATCTTCGGTACCGAGCAGGACAAGGTCAATTGTTCGTTCTACTACAAAATCGGC
GCGTGCCGACACGGCGACCGCTGCTCTCGCAAGCATGTTAAGCCTTCGTACTCGCAAACCATTCTCATGCCGAAC
ATGTACCAGAACCCGGCTTACGACCCCAAGAACAAGATGAACCCCAGCCAAATGCAGAACCATTTCGACGCCTTC
TACGAGGACGTATGGTGTGAGTTGTGCAAGTACGGCGAGCTGGAAGAGTTGGTCATCTGCGACAACAACAACGAC
CACCTCATTGGTAACGTCTACGGCCGATTCAAATACGAAGAAGATGCGCAGGCAGCCTGTGACGCGATAAACTCC
CGTTGGTACGCAGCGCGACCTATCTACTGCGAGTTATCACCCGTTACCGATTTCCGAGAAGCCTGTTGTCGGCTC
AATAGCGGCGAAGGGTGTGTACGAGGGGGCTTCTGCAATTTCATTCACCGGAAAGATCCGACACCCGACCTCGAC
CGCGAGCTGCGACTGAGCACCAAGAAGTGGCTCAAGGAGCGCGGCAGAGATCCTCGCAGCGCCAGCCGCAGTCCT
AGCCCCGAGCCCACCCGGCGCAGATACTAG
Transcript >Pro_DTO377G3_2|g6004.t1
ATGGCCAACTACCTTGCATCCATCTTCGGTACCGAGCAGGACAAGGTCAATTGTTCGTTCTACTACAAAATCGGC
GCGTGCCGACACGGCGACCGCTGCTCTCGCAAGCATGTTAAGCCTTCGTACTCGCAAACCATTCTCATGCCGAAC
ATGTACCAGAACCCGGCTTACGACCCCAAGAACAAGATGAACCCCAGCCAAATGCAGAACCATTTCGACGCCTTC
TACGAGGACGTATGGTGTGAGTTGTGCAAGTACGGCGAGCTGGAAGAGTTGGTCATCTGCGACAACAACAACGAC
CACCTCATTGGTAACGTCTACGGCCGATTCAAATACGAAGAAGATGCGCAGGCAGCCTGTGACGCGATAAACTCC
CGTTGGTACGCAGCGCGACCTATCTACTGCGAGTTATCACCCGTTACCGATTTCCGAGAAGCCTGTTGTCGGCTC
AATAGCGGCGAAGGGTGTGTACGAGGGGGCTTCTGCAATTTCATTCACCGGAAAGATCCGACACCCGACCTCGAC
CGCGAGCTGCGACTGAGCACCAAGAAGTGGCTCAAGGAGCGCGGCAGAGATCCTCGCAGCGCCAGCCGCAGTCCT
AGCCCCGAGCCCACCCGGCGCAGATACTAG
Gene >Pro_DTO377G3_2|g6004.t1
ATGGCCAACTACCTTGCATCCATCTTCGGTACCGAGCAGGACAAGGTCAATTGTTCGTTCTACTACAAAATCGGC
GCGTGCCGACACGGCGACCGCTGCTCTCGCAAGCATGTTAAGCCTTCGTACTCGCAAACCATTCTCATGCCGAAC
ATGTACCAGAACCCGGCTTACGACCCCAAGAACAAGATGAACCCCAGCCAAATGCAGAACCATTTCGACGCCTTC
TACGAGGACGTATGGTGTGAGTTGTGCAAGTACGGCGAGCTGGAAGAGTTGGTCATCTGCGACAACAACAACGAC
CGTAAGTAGTGCTCTCTTCAAAATTTGTGTCTGAATCTACTGACATCTGTTTTCGCGACAATAGACCTCATTGGT
AACGTCTACGGCCGATTCAAATACGAAGAAGATGCGCAGGCAGCCTGTGACGCGATAAACTCCCGTTGGTACGCA
GCGCGACCTATCTACTGCGAGTTATCACCCGTTACCGATTTCCGAGAAGCCTGTTGTCGGCTCAATAGCGGCGAA
GGGTGTGTACGAGGGGGCTTCTGCAATTTCATTCACCGGAAAGATCCGACACCCGACCTCGACCGCGAGCTGCGA
CTGAGCACCAAGAAGTGGCTCAAGGAGCGCGGCAGAGATCCTCGCAGCGCCAGCCGCAGTCCTAGCCCCGAGCCC
ACCCGGCGCAGATACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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