© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5976.t1 |
| Gene name | |
| Location | scaffold_15:295991..296591 |
| Strand | - |
| Gene length (bp) | 600 |
| Transcript length (bp) | 411 |
| Coding sequence length (bp) | 411 |
| Protein length (aa) | 137 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00125 | Histone | Core histone H2A/H2B/H3/H4 | 2.1E-49 | 1 | 132 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5323.60 | 2849.69 | 7797.50 |
| 5d_25C | Five days - 25 degrees Celsius | 5566.25 | 2973.38 | 8159.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 5389.91 | 2853.97 | 7925.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 5575.68 | 2961.89 | 8189.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 5750.47 | 2836.30 | 8664.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 5031.80 | 2720.43 | 7343.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.908838 | no |
| 3d_25C | 7d_25C | 0.977103 | no |
| 3d_25C | 7d_15C | 0.840349 | no |
| 3d_25C | 7d_30C | 0.880914 | no |
| 3d_25C | 10d_25C | 0.902195 | no |
| 5d_25C | 7d_25C | 0.936796 | no |
| 5d_25C | 7d_15C | 0.939159 | no |
| 5d_25C | 7d_30C | 0.775143 | no |
| 5d_25C | 10d_25C | 0.997043 | no |
| 7d_25C | 7d_15C | 0.876333 | no |
| 7d_25C | 7d_30C | 0.861024 | no |
| 7d_25C | 10d_25C | 0.932430 | no |
| 7d_15C | 7d_30C | 0.708870 | no |
| 7d_15C | 10d_25C | 0.940717 | no |
| 7d_30C | 10d_25C | 0.768595 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5976.t1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREI AQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS* |
| Coding | >Pro_DTO377G3_2|g5976.t1 ATGGCTCGTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAGCAGCTCGCTTCCAAGGCC GCTCGCAAGGCCGCTCCTTCTACCGGAGGTGTCAAGAAGCCCCACCGTTACAAGCCCGGTACCGTCGCTCTCCGT GAGATCCGTCGCTACCAGAAGTCCACTGAGCTCCTGATCCGCAAGCTCCCCTTCCAGCGTCTGGTCCGTGAGATC GCCCAGGATTTCAAGTCCGATCTCCGCTTCCAGTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCTTAC CTCGTCTCTCTCTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCCAGTCCAAGGACATC CAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTCGTAA |
| Transcript | >Pro_DTO377G3_2|g5976.t1 ATGGCTCGTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAGCAGCTCGCTTCCAAGGCC GCTCGCAAGGCCGCTCCTTCTACCGGAGGTGTCAAGAAGCCCCACCGTTACAAGCCCGGTACCGTCGCTCTCCGT GAGATCCGTCGCTACCAGAAGTCCACTGAGCTCCTGATCCGCAAGCTCCCCTTCCAGCGTCTGGTCCGTGAGATC GCCCAGGATTTCAAGTCCGATCTCCGCTTCCAGTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCTTAC CTCGTCTCTCTCTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCCAGTCCAAGGACATC CAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTCGTAA |
| Gene | >Pro_DTO377G3_2|g5976.t1 ATGGCTCGTACCAAGCAGACTGCCCGTAAGTATTACCTCTATCATATTTTATTCATCTCACTGCAGATACCTGAT TAGTCGGGTGTCCGCCTTGAGGATGGGCGACGCGTTCACGCGTTGGACATGAGACATTTTACTGACTGTCGCAAA TAGGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAGCAGCTCGCTTCCAAGGCCGCTCGCAAGGCCGCTCCTTCTA CCGGAGGTGTCAAGAAGCCCCACCGTTACAAGCCCGGTAAGTCATATCTGCTGTCGCCGACGAATCCACTTGAAA CATTTCTAACGTTCATCTCCAGGTACCGTCGCTCTCCGTGAGATCCGTCGCTACCAGAAGTCCACTGAGCTCCTG ATCCGCAAGCTCCCCTTCCAGCGTCTGGTCCGTGAGATCGCCCAGGATTTCAAGTCCGATCTCCGCTTCCAGTCC TCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCTTACCTCGTCTCTCTCTTCGAGGACACCAACCTGTGCGCC ATCCACGCCAAGCGTGTCACCATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTCGTAA |