© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5942.t1 |
| Gene name | |
| Location | scaffold_15:202136..202778 |
| Strand | - |
| Gene length (bp) | 642 |
| Transcript length (bp) | 642 |
| Coding sequence length (bp) | 642 |
| Protein length (aa) | 214 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 5.6E-08 | 99 | 123 |
| PF12874 | zf-met | Zinc-finger of C2H2 type | 1.9E-05 | 99 | 123 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 58.65 | 30.13 | 87.16 |
| 5d_25C | Five days - 25 degrees Celsius | 66.45 | 34.97 | 97.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 76.24 | 41.26 | 111.21 |
| 10d_25C | Ten days - 25 degrees Celsius | 105.28 | 60.32 | 150.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 71.39 | 38.06 | 104.71 |
| 7d_30C | Seven days - 30 degrees Celsius | 64.61 | 33.37 | 95.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.725716 | no |
| 3d_25C | 7d_25C | 0.382152 | no |
| 3d_25C | 7d_15C | 0.535430 | no |
| 3d_25C | 7d_30C | 0.797250 | no |
| 3d_25C | 10d_25C | 0.012303 | yes |
| 5d_25C | 7d_25C | 0.682490 | no |
| 5d_25C | 7d_15C | 0.849049 | no |
| 5d_25C | 7d_30C | 0.945661 | no |
| 5d_25C | 10d_25C | 0.057058 | no |
| 7d_25C | 7d_15C | 0.861955 | no |
| 7d_25C | 7d_30C | 0.610859 | no |
| 7d_25C | 10d_25C | 0.216092 | no |
| 7d_15C | 7d_30C | 0.780894 | no |
| 7d_15C | 10d_25C | 0.119819 | no |
| 7d_30C | 10d_25C | 0.043772 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5942.t1 MSGPNSYGTPVSDTAFRKTWDREEYAKKAADDEAKRKAEGKARYEAKLLGKKYHAPVDYSSLEDTTARNQRLDVA SMVGKTMIVPAGSGMGKRGLGAGFYCKDCDLTYKDNLQLVEHLNSKQHLIATGQSGEVKRANVEDVRLRLRMLSH RKRQRDEEERKAWQLDLGVRLKEREEIDAKEREEKRRKRTEKRKKEKVKKEDDSWEGRLGIIC* |
| Coding | >Pro_DTO377G3_2|g5942.t1 ATGTCAGGACCAAACTCCTACGGCACCCCGGTGTCGGACACGGCCTTTCGCAAAACCTGGGACCGCGAAGAATAC GCCAAAAAAGCCGCCGACGATGAAGCAAAGCGCAAAGCCGAAGGCAAAGCCCGCTACGAAGCGAAGCTACTGGGC AAGAAATACCACGCACCAGTCGACTACAGCTCGCTCGAGGATACCACAGCCCGCAATCAGCGCCTGGACGTCGCG TCCATGGTGGGCAAGACGATGATTGTGCCCGCAGGCTCGGGGATGGGCAAACGCGGCCTCGGCGCTGGATTTTAC TGCAAGGACTGTGATCTTACCTACAAGGATAACTTGCAGCTTGTGGAGCACTTGAACAGCAAGCAGCATCTGATT GCGACGGGGCAGAGTGGCGAGGTGAAGAGGGCGAATGTTGAGGACGTGCGCTTGCGATTGAGGATGCTTTCGCAT CGGAAGCGTCAGAGGGACGAGGAAGAGCGCAAGGCTTGGCAGCTTGATCTGGGGGTGCGGCTCAAGGAGCGGGAG GAGATTGATGCCAAAGAGAGGGAGGAGAAGAGGCGCAAGCGCACTGAGAAGCGGAAGAAGGAGAAGGTTAAGAAG GAGGATGATAGCTGGGAGGGCCGGTTGGGGATCATTTGTTGA |
| Transcript | >Pro_DTO377G3_2|g5942.t1 ATGTCAGGACCAAACTCCTACGGCACCCCGGTGTCGGACACGGCCTTTCGCAAAACCTGGGACCGCGAAGAATAC GCCAAAAAAGCCGCCGACGATGAAGCAAAGCGCAAAGCCGAAGGCAAAGCCCGCTACGAAGCGAAGCTACTGGGC AAGAAATACCACGCACCAGTCGACTACAGCTCGCTCGAGGATACCACAGCCCGCAATCAGCGCCTGGACGTCGCG TCCATGGTGGGCAAGACGATGATTGTGCCCGCAGGCTCGGGGATGGGCAAACGCGGCCTCGGCGCTGGATTTTAC TGCAAGGACTGTGATCTTACCTACAAGGATAACTTGCAGCTTGTGGAGCACTTGAACAGCAAGCAGCATCTGATT GCGACGGGGCAGAGTGGCGAGGTGAAGAGGGCGAATGTTGAGGACGTGCGCTTGCGATTGAGGATGCTTTCGCAT CGGAAGCGTCAGAGGGACGAGGAAGAGCGCAAGGCTTGGCAGCTTGATCTGGGGGTGCGGCTCAAGGAGCGGGAG GAGATTGATGCCAAAGAGAGGGAGGAGAAGAGGCGCAAGCGCACTGAGAAGCGGAAGAAGGAGAAGGTTAAGAAG GAGGATGATAGCTGGGAGGGCCGGTTGGGGATCATTTGTTGA |
| Gene | >Pro_DTO377G3_2|g5942.t1 ATGTCAGGACCAAACTCCTACGGCACCCCGGTGTCGGACACGGCCTTTCGCAAAACCTGGGACCGCGAAGAATAC GCCAAAAAAGCCGCCGACGATGAAGCAAAGCGCAAAGCCGAAGGCAAAGCCCGCTACGAAGCGAAGCTACTGGGC AAGAAATACCACGCACCAGTCGACTACAGCTCGCTCGAGGATACCACAGCCCGCAATCAGCGCCTGGACGTCGCG TCCATGGTGGGCAAGACGATGATTGTGCCCGCAGGCTCGGGGATGGGCAAACGCGGCCTCGGCGCTGGATTTTAC TGCAAGGACTGTGATCTTACCTACAAGGATAACTTGCAGCTTGTGGAGCACTTGAACAGCAAGCAGCATCTGATT GCGACGGGGCAGAGTGGCGAGGTGAAGAGGGCGAATGTTGAGGACGTGCGCTTGCGATTGAGGATGCTTTCGCAT CGGAAGCGTCAGAGGGACGAGGAAGAGCGCAAGGCTTGGCAGCTTGATCTGGGGGTGCGGCTCAAGGAGCGGGAG GAGATTGATGCCAAAGAGAGGGAGGAGAAGAGGCGCAAGCGCACTGAGAAGCGGAAGAAGGAGAAGGTTAAGAAG GAGGATGATAGCTGGGAGGGCCGGTTGGGGATCATTTGTTGA |