© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g594.t1 |
| Gene name | |
| Location | scaffold_01:1528282..1529841 |
| Strand | - |
| Gene length (bp) | 1559 |
| Transcript length (bp) | 1491 |
| Coding sequence length (bp) | 1491 |
| Protein length (aa) | 497 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04757 | Pex2_Pex12 | Pex2 / Pex12 amino terminal region | 2.1E-53 | 25 | 295 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.12 | 27.21 | 65.03 |
| 5d_25C | Five days - 25 degrees Celsius | 41.90 | 24.45 | 59.35 |
| 7d_25C | Seven days - 25 degrees Celsius | 38.40 | 22.01 | 54.79 |
| 10d_25C | Ten days - 25 degrees Celsius | 39.48 | 22.77 | 56.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 47.47 | 28.08 | 66.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 34.24 | 19.22 | 49.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.758605 | no |
| 3d_25C | 7d_25C | 0.502822 | no |
| 3d_25C | 7d_15C | 0.937419 | no |
| 3d_25C | 7d_30C | 0.235533 | no |
| 3d_25C | 10d_25C | 0.579453 | no |
| 5d_25C | 7d_25C | 0.787466 | no |
| 5d_25C | 7d_15C | 0.670705 | no |
| 5d_25C | 7d_30C | 0.472746 | no |
| 5d_25C | 10d_25C | 0.862263 | no |
| 7d_25C | 7d_15C | 0.427762 | no |
| 7d_25C | 7d_30C | 0.723180 | no |
| 7d_25C | 10d_25C | 0.938154 | no |
| 7d_15C | 7d_30C | 0.183361 | no |
| 7d_15C | 10d_25C | 0.497548 | no |
| 7d_30C | 10d_25C | 0.641176 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g594.t1 MEYLPSLQQEFDEHKPSLFELLAEQQLSDLLPPSLRYLLAVATHRHPRYLLRILNSYDEIYALLSLIVERYYLRT FGGSFTENFYSLKRERVLRTKNGEIPRAQVGAAGPVREALKLHSTDIWKNLFVMVGIPYLKRKLDEGYDIHAAPH ASLVTSSGPRYNPSDDLPVNPSLRQRIFFYYKWFLRNVYPSVNAAYYFSVLEFNLAYLFDNTKYSSPFLWLIGTR IRRLGIADHRAIAAVLDPKPGPSTGRSQRPGGGLLGLLSPQNLHTQLLTSLRYFLPASIFALKFLEWWHASDFSR QLARKATEVLDLPAPIVAGLTSPAERRKSSIQDEKEKAKKQAEQEKKSAAGDLKPALKPPRRHQPPISATSYLPI YTVSLPPADPSSANTCPVCMGPLVNPTACQTGYVFCYVCIFHWLNGEHQRQLDFMTGEGAGAPWEEEITGDDEET KKSPSGDDSEEGPRKRSGKWESGKGRCPVTGRRVLGGTDGLRRVLV* |
| Coding | >Pro_DTO377G3_2|g594.t1 ATGGAGTACCTTCCTAGTCTTCAACAGGAGTTCGACGAGCACAAGCCGTCGCTCTTCGAACTCCTCGCTGAGCAA CAGCTCTCGGATCTTCTTCCCCCGTCTTTGCGTTATCTTCTCGCAGTCGCAACACACCGCCACCCGCGCTATCTC CTCCGGATCCTCAACTCATATGACGAAATCTATGCCCTCCTTTCATTAATAGTCGAACGTTACTACCTGCGAACA TTCGGCGGCTCCTTCACAGAAAACTTCTATTCCTTGAAACGTGAGCGCGTTCTCCGAACCAAGAATGGCGAGATC CCGCGCGCCCAGGTTGGCGCCGCAGGCCCCGTGCGCGAGGCCCTGAAGCTACACTCGACGGACATCTGGAAGAAC TTGTTCGTCATGGTTGGAATACCTTACCTAAAGCGCAAGTTAGACGAAGGATACGACATTCATGCCGCGCCACAT GCATCCCTGGTCACCAGCAGCGGCCCACGATATAATCCCAGCGACGATCTGCCGGTCAACCCGTCGCTACGCCAA CGCATCTTCTTCTACTACAAGTGGTTCCTGCGCAATGTCTACCCATCCGTGAATGCGGCGTACTATTTCTCTGTT CTGGAGTTCAACCTAGCCTACCTTTTCGACAACACAAAATACTCCTCCCCATTCCTATGGCTTATCGGCACGCGT ATCCGCCGCCTCGGCATCGCAGACCACCGCGCTATCGCCGCAGTGCTAGATCCCAAGCCTGGCCCCAGCACCGGG CGATCTCAGCGACCCGGCGGAGGTCTGCTTGGTCTACTTAGTCCCCAGAACCTCCATACTCAGCTCTTGACCTCG CTGCGCTACTTCCTTCCTGCGTCGATCTTCGCCCTCAAGTTCCTAGAATGGTGGCATGCAAGCGACTTCTCTCGC CAGCTAGCCCGCAAGGCAACTGAGGTCCTGGATCTGCCTGCCCCCATTGTGGCAGGTTTGACTTCTCCTGCGGAA CGACGGAAATCGTCAATCCAAGATGAGAAAGAGAAGGCGAAGAAGCAGGCCGAGCAGGAGAAGAAGAGCGCTGCC GGCGATCTTAAACCAGCACTCAAGCCTCCTCGTCGCCACCAACCGCCTATTTCAGCGACCTCTTATCTTCCCATC TACACTGTGTCTTTGCCTCCGGCTGATCCTTCCAGCGCAAATACTTGCCCTGTCTGCATGGGTCCGCTCGTCAAC CCGACTGCTTGCCAGACGGGGTACGTGTTCTGTTATGTGTGCATCTTCCACTGGCTGAACGGTGAGCATCAGCGC CAACTGGATTTCATGACCGGCGAGGGCGCTGGCGCACCGTGGGAAGAGGAGATCACAGGTGACGATGAAGAGACA AAGAAGAGCCCTAGTGGAGATGACTCTGAAGAAGGCCCCCGAAAACGATCTGGTAAATGGGAGAGTGGCAAGGGG AGGTGTCCTGTAACAGGGAGGAGAGTGCTTGGAGGTACTGATGGATTGAGGAGAGTGTTGGTTTGA |
| Transcript | >Pro_DTO377G3_2|g594.t1 ATGGAGTACCTTCCTAGTCTTCAACAGGAGTTCGACGAGCACAAGCCGTCGCTCTTCGAACTCCTCGCTGAGCAA CAGCTCTCGGATCTTCTTCCCCCGTCTTTGCGTTATCTTCTCGCAGTCGCAACACACCGCCACCCGCGCTATCTC CTCCGGATCCTCAACTCATATGACGAAATCTATGCCCTCCTTTCATTAATAGTCGAACGTTACTACCTGCGAACA TTCGGCGGCTCCTTCACAGAAAACTTCTATTCCTTGAAACGTGAGCGCGTTCTCCGAACCAAGAATGGCGAGATC CCGCGCGCCCAGGTTGGCGCCGCAGGCCCCGTGCGCGAGGCCCTGAAGCTACACTCGACGGACATCTGGAAGAAC TTGTTCGTCATGGTTGGAATACCTTACCTAAAGCGCAAGTTAGACGAAGGATACGACATTCATGCCGCGCCACAT GCATCCCTGGTCACCAGCAGCGGCCCACGATATAATCCCAGCGACGATCTGCCGGTCAACCCGTCGCTACGCCAA CGCATCTTCTTCTACTACAAGTGGTTCCTGCGCAATGTCTACCCATCCGTGAATGCGGCGTACTATTTCTCTGTT CTGGAGTTCAACCTAGCCTACCTTTTCGACAACACAAAATACTCCTCCCCATTCCTATGGCTTATCGGCACGCGT ATCCGCCGCCTCGGCATCGCAGACCACCGCGCTATCGCCGCAGTGCTAGATCCCAAGCCTGGCCCCAGCACCGGG CGATCTCAGCGACCCGGCGGAGGTCTGCTTGGTCTACTTAGTCCCCAGAACCTCCATACTCAGCTCTTGACCTCG CTGCGCTACTTCCTTCCTGCGTCGATCTTCGCCCTCAAGTTCCTAGAATGGTGGCATGCAAGCGACTTCTCTCGC CAGCTAGCCCGCAAGGCAACTGAGGTCCTGGATCTGCCTGCCCCCATTGTGGCAGGTTTGACTTCTCCTGCGGAA CGACGGAAATCGTCAATCCAAGATGAGAAAGAGAAGGCGAAGAAGCAGGCCGAGCAGGAGAAGAAGAGCGCTGCC GGCGATCTTAAACCAGCACTCAAGCCTCCTCGTCGCCACCAACCGCCTATTTCAGCGACCTCTTATCTTCCCATC TACACTGTGTCTTTGCCTCCGGCTGATCCTTCCAGCGCAAATACTTGCCCTGTCTGCATGGGTCCGCTCGTCAAC CCGACTGCTTGCCAGACGGGGTACGTGTTCTGTTATGTGTGCATCTTCCACTGGCTGAACGGTGAGCATCAGCGC CAACTGGATTTCATGACCGGCGAGGGCGCTGGCGCACCGTGGGAAGAGGAGATCACAGGTGACGATGAAGAGACA AAGAAGAGCCCTAGTGGAGATGACTCTGAAGAAGGCCCCCGAAAACGATCTGGTAAATGGGAGAGTGGCAAGGGG AGGTGTCCTGTAACAGGGAGGAGAGTGCTTGGAGGTACTGATGGATTGAGGAGAGTGTTGGTTTGA |
| Gene | >Pro_DTO377G3_2|g594.t1 ATGGAGTACCTTCCTAGTCTTCAACAGGAGTTCGACGAGCACAAGCCGTCGCTCTTCGGTAAGTCGATTGATGCT TCCCCGCGTAGTGATTAGAAGCGCTAACGCTAGGTTCGTGCTTGACAACAGAACTCCTCGCTGAGCAACAGCTCT CGGATCTTCTTCCCCCGTCTTTGCGTTATCTTCTCGCAGTCGCAACACACCGCCACCCGCGCTATCTCCTCCGGA TCCTCAACTCATATGACGAAATCTATGCCCTCCTTTCATTAATAGTCGAACGTTACTACCTGCGAACATTCGGCG GCTCCTTCACAGAAAACTTCTATTCCTTGAAACGTGAGCGCGTTCTCCGAACCAAGAATGGCGAGATCCCGCGCG CCCAGGTTGGCGCCGCAGGCCCCGTGCGCGAGGCCCTGAAGCTACACTCGACGGACATCTGGAAGAACTTGTTCG TCATGGTTGGAATACCTTACCTAAAGCGCAAGTTAGACGAAGGATACGACATTCATGCCGCGCCACATGCATCCC TGGTCACCAGCAGCGGCCCACGATATAATCCCAGCGACGATCTGCCGGTCAACCCGTCGCTACGCCAACGCATCT TCTTCTACTACAAGTGGTTCCTGCGCAATGTCTACCCATCCGTGAATGCGGCGTACTATTTCTCTGTTCTGGAGT TCAACCTAGCCTACCTTTTCGACAACACAAAATACTCCTCCCCATTCCTATGGCTTATCGGCACGCGTATCCGCC GCCTCGGCATCGCAGACCACCGCGCTATCGCCGCAGTGCTAGATCCCAAGCCTGGCCCCAGCACCGGGCGATCTC AGCGACCCGGCGGAGGTCTGCTTGGTCTACTTAGTCCCCAGAACCTCCATACTCAGCTCTTGACCTCGCTGCGCT ACTTCCTTCCTGCGTCGATCTTCGCCCTCAAGTTCCTAGAATGGTGGCATGCAAGCGACTTCTCTCGCCAGCTAG CCCGCAAGGCAACTGAGGTCCTGGATCTGCCTGCCCCCATTGTGGCAGGTTTGACTTCTCCTGCGGAACGACGGA AATCGTCAATCCAAGATGAGAAAGAGAAGGCGAAGAAGCAGGCCGAGCAGGAGAAGAAGAGCGCTGCCGGCGATC TTAAACCAGCACTCAAGCCTCCTCGTCGCCACCAACCGCCTATTTCAGCGACCTCTTATCTTCCCATCTACACTG TGTCTTTGCCTCCGGCTGATCCTTCCAGCGCAAATACTTGCCCTGTCTGCATGGGTCCGCTCGTCAACCCGACTG CTTGCCAGACGGGGTACGTGTTCTGTTATGTGTGCATCTTCCACTGGCTGAACGGTGAGCATCAGCGCCAACTGG ATTTCATGACCGGCGAGGGCGCTGGCGCACCGTGGGAAGAGGAGATCACAGGTGACGATGAAGAGACAAAGAAGA GCCCTAGTGGAGATGACTCTGAAGAAGGCCCCCGAAAACGATCTGGTAAATGGGAGAGTGGCAAGGGGAGGTGTC CTGTAACAGGGAGGAGAGTGCTTGGAGGTACTGATGGATTGAGGAGAGTGTTGGTTTGA |