Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g5933.t1
Gene name
Location	scaffold_15:182891..183800
Strand	-
Gene length (bp)	909
Transcript length (bp)	705
Coding sequence length (bp)	705
Protein length (aa)	235

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01191	RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	3.9E-33	161	233
PF03871	RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	1.2E-23	12	117

GO

GO Term	Description	Terminal node
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	Yes
GO:0006351	transcription, DNA-templated	Yes
GO:0003677	DNA binding	Yes
GO:1901360	organic cyclic compound metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0005488	binding	No
GO:0008152	metabolic process	No
GO:0019438	aromatic compound biosynthetic process	No
GO:0043170	macromolecule metabolic process	No
GO:0016740	transferase activity	No
GO:0003676	nucleic acid binding	No
GO:0071704	organic substance metabolic process	No
GO:0009058	biosynthetic process	No
GO:0008150	biological_process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0034654	nucleobase-containing compound biosynthetic process	No
GO:0032774	RNA biosynthetic process	No
GO:0016772	transferase activity, transferring phosphorus-containing groups	No
GO:0016070	RNA metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0044271	cellular nitrogen compound biosynthetic process	No
GO:0003824	catalytic activity	No
GO:1901363	heterocyclic compound binding	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0044238	primary metabolic process	No
GO:0034062	5'-3' RNA polymerase activity	No
GO:1901576	organic substance biosynthetic process	No
GO:0009059	macromolecule biosynthetic process	No
GO:0009987	cellular process	No
GO:0044237	cellular metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0016779	nucleotidyltransferase activity	No
GO:0097747	RNA polymerase activity	No
GO:0097659	nucleic acid-templated transcription	No
GO:0140098	catalytic activity, acting on RNA	No
GO:0018130	heterocycle biosynthetic process	No
GO:0097159	organic cyclic compound binding	No
GO:0044249	cellular biosynthetic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:1901362	organic cyclic compound biosynthetic process	No
GO:0003674	molecular_function	No
GO:0046483	heterocycle metabolic process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 15	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g5933.t1 MDGDSAHSMEAEREMTRLWRTFRTVYELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRTKMKIQARPTDTMK MKYTPLPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFITQTPISPSAVRLLSGVPGRI CEHFQEQDLLVNITRHELVPKHVLLSPEEKGKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAG RYASYRWVI*
Coding	>Pro_DTO377G3_2\|g5933.t1 ATGGATGGGGATTCGGCACACTCCATGGAAGCCGAGCGCGAGATGACTCGGCTCTGGCGCACATTTAGAACAGTC TATGAACTGCTCGCTGACCGGGGCTACGAAGTATCTGATAACGAGCTGGTACTCCCGCTAGAAGACTTCCGCGCA AAATATGCTGACCCTCTGGGCTACCCCGATCGCACCAAGATGAAAATCCAAGCCCGCCCCACCGATACCATGAAG ATGAAGTACACACCACTTCCCAGCAAAGCAAACCCAAACCCCCAGCCAGACTGCGGCACAATTTACGTCGACTTC TGCCCCGACTCCTCAGGTGTCGGAACCAAGCAAGTGCGCGCCTTCAACCACCTTGTCGATGAGAACAACTTCCAC ACTGGTATCTTCATCACGCAGACGCCTATCTCACCCTCTGCCGTGCGCCTGCTTTCCGGCGTCCCCGGCCGCATC TGCGAACACTTCCAGGAACAAGATCTGCTCGTCAACATCACCCGCCACGAGCTAGTCCCCAAGCACGTCCTGCTT AGCCCCGAGGAGAAGGGCAAGCTTCTCGAGCGCTACCGTCTGAAGGAGTCTCAATTGCCCCGCATACAGATCTCG GATCCTGTTGCCCGCTATCTTGGGTTGCGCCGTGGCCAGGTCGTTAAGATCATTCGCAAGTCTGAGACTGCAGGT CGCTATGCCAGTTACCGCTGGGTCATTTAA
Transcript	>Pro_DTO377G3_2\|g5933.t1 ATGGATGGGGATTCGGCACACTCCATGGAAGCCGAGCGCGAGATGACTCGGCTCTGGCGCACATTTAGAACAGTC TATGAACTGCTCGCTGACCGGGGCTACGAAGTATCTGATAACGAGCTGGTACTCCCGCTAGAAGACTTCCGCGCA AAATATGCTGACCCTCTGGGCTACCCCGATCGCACCAAGATGAAAATCCAAGCCCGCCCCACCGATACCATGAAG ATGAAGTACACACCACTTCCCAGCAAAGCAAACCCAAACCCCCAGCCAGACTGCGGCACAATTTACGTCGACTTC TGCCCCGACTCCTCAGGTGTCGGAACCAAGCAAGTGCGCGCCTTCAACCACCTTGTCGATGAGAACAACTTCCAC ACTGGTATCTTCATCACGCAGACGCCTATCTCACCCTCTGCCGTGCGCCTGCTTTCCGGCGTCCCCGGCCGCATC TGCGAACACTTCCAGGAACAAGATCTGCTCGTCAACATCACCCGCCACGAGCTAGTCCCCAAGCACGTCCTGCTT AGCCCCGAGGAGAAGGGCAAGCTTCTCGAGCGCTACCGTCTGAAGGAGTCTCAATTGCCCCGCATACAGATCTCG GATCCTGTTGCCCGCTATCTTGGGTTGCGCCGTGGCCAGGTCGTTAAGATCATTCGCAAGTCTGAGACTGCAGGT CGCTATGCCAGTTACCGCTGGGTCATTTAA
Gene	>Pro_DTO377G3_2\|g5933.t1 ATGGATGGGGATTCGGCACACTCCATGGAAGCCGAGCGCGAGATGACTCGGCTCTGGCGCACATTTAGAACAGTC TATGAACTGCTCGCTGACCGGGTAGGTACCCCAGATCGAGTCCCTGACTTCTCAGTGTCTCTCCTATAATGCCCG TTTACCCAAGGCTAACCATCGGCGACACACCAGGGCTACGAAGTATCTGATAACGAGCTGGTACTCCCGCTAGAA GACTTCCGCGCAAAATATGCTGACCCTCTGGGCTACCCCGAGTACGTGAATCCCTGCGTCCACCGCCCCATTGTC TTGAGATAGTGGAAATTTGAGCTAGTCAATGCCGGCACACGTCATTGAAAAGGCACATATCACTAATAGTTCCGC AACAATAGTCGCACCAAGATGAAAATCCAAGCCCGCCCCACCGATACCATGAAGATGAAGTACACACCACTTCCC AGCAAAGCAAACCCAAACCCCCAGCCAGACTGCGGCACAATTTACGTCGACTTCTGCCCCGACTCCTCAGGTGTC GGAACCAAGCAAGTGCGCGCCTTCAACCACCTTGTCGATGAGAACAACTTCCACACTGGTATCTTCATCACGCAG ACGCCTATCTCACCCTCTGCCGTGCGCCTGCTTTCCGGCGTCCCCGGCCGCATCTGCGAACACTTCCAGGAACAA GATCTGCTCGTCAACATCACCCGCCACGAGCTAGTCCCCAAGCACGTCCTGCTTAGCCCCGAGGAGAAGGGCAAG CTTCTCGAGCGCTACCGTCTGAAGGAGTCTCAATTGCCCCGCATACAGATCTCGGATCCTGTTGCCCGCTATCTT GGGTTGCGCCGTGGCCAGGTCGTTAAGATCATTCGCAAGTCTGAGACTGCAGGTCGCTATGCCAGTTACCGCTGG GTCATTTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences