Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5933.t1
Gene name
Locationscaffold_15:182891..183800
Strand-
Gene length (bp)909
Transcript length (bp)705
Coding sequence length (bp)705
Protein length (aa) 235

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain 2.3E-33 161 233
PF03871 RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain 1.8E-23 12 117

GO

GO Term Description Terminal node
GO:0003899 DNA-directed 5'-3' RNA polymerase activity Yes
GO:0006351 transcription, DNA-templated Yes
GO:0005634 nucleus Yes
GO:0003677 DNA binding Yes
GO:0016740 transferase activity No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044238 primary metabolic process No
GO:0003824 catalytic activity No
GO:0097659 nucleic acid-templated transcription No
GO:0044260 cellular macromolecule metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0043227 membrane-bounded organelle No
GO:0044464 cell part No
GO:0016779 nucleotidyltransferase activity No
GO:0043231 intracellular membrane-bounded organelle No
GO:0003674 molecular_function No
GO:0016070 RNA metabolic process No
GO:0005488 binding No
GO:0044424 intracellular part No
GO:0006725 cellular aromatic compound metabolic process No
GO:0003676 nucleic acid binding No
GO:0097747 RNA polymerase activity No
GO:0009058 biosynthetic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0034062 5'-3' RNA polymerase activity No
GO:0006807 nitrogen compound metabolic process No
GO:0043226 organelle No
GO:1901576 organic substance biosynthetic process No
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0008150 biological_process No
GO:0140098 catalytic activity, acting on RNA No
GO:0008152 metabolic process No
GO:0044249 cellular biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0005575 cellular_component No
GO:0043229 intracellular organelle No
GO:0032774 RNA biosynthetic process No
GO:0044237 cellular metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5933.t1
MDGDSAHSMEAEREMTRLWRTFRTVYELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRTKMKIQARPTDTMK
MKYTPLPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFITQTPISPSAVRLLSGVPGRI
CEHFQEQDLLVNITRHELVPKHVLLSPEEKGKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAG
RYASYRWVI*
Coding >Pro_DTO377G3_2|g5933.t1
ATGGATGGGGATTCGGCACACTCCATGGAAGCCGAGCGCGAGATGACTCGGCTCTGGCGCACATTTAGAACAGTC
TATGAACTGCTCGCTGACCGGGGCTACGAAGTATCTGATAACGAGCTGGTACTCCCGCTAGAAGACTTCCGCGCA
AAATATGCTGACCCTCTGGGCTACCCCGATCGCACCAAGATGAAAATCCAAGCCCGCCCCACCGATACCATGAAG
ATGAAGTACACACCACTTCCCAGCAAAGCAAACCCAAACCCCCAGCCAGACTGCGGCACAATTTACGTCGACTTC
TGCCCCGACTCCTCAGGTGTCGGAACCAAGCAAGTGCGCGCCTTCAACCACCTTGTCGATGAGAACAACTTCCAC
ACTGGTATCTTCATCACGCAGACGCCTATCTCACCCTCTGCCGTGCGCCTGCTTTCCGGCGTCCCCGGCCGCATC
TGCGAACACTTCCAGGAACAAGATCTGCTCGTCAACATCACCCGCCACGAGCTAGTCCCCAAGCACGTCCTGCTT
AGCCCCGAGGAGAAGGGCAAGCTTCTCGAGCGCTACCGTCTGAAGGAGTCTCAATTGCCCCGCATACAGATCTCG
GATCCTGTTGCCCGCTATCTTGGGTTGCGCCGTGGCCAGGTCGTTAAGATCATTCGCAAGTCTGAGACTGCAGGT
CGCTATGCCAGTTACCGCTGGGTCATTTAA
Transcript >Pro_DTO377G3_2|g5933.t1
ATGGATGGGGATTCGGCACACTCCATGGAAGCCGAGCGCGAGATGACTCGGCTCTGGCGCACATTTAGAACAGTC
TATGAACTGCTCGCTGACCGGGGCTACGAAGTATCTGATAACGAGCTGGTACTCCCGCTAGAAGACTTCCGCGCA
AAATATGCTGACCCTCTGGGCTACCCCGATCGCACCAAGATGAAAATCCAAGCCCGCCCCACCGATACCATGAAG
ATGAAGTACACACCACTTCCCAGCAAAGCAAACCCAAACCCCCAGCCAGACTGCGGCACAATTTACGTCGACTTC
TGCCCCGACTCCTCAGGTGTCGGAACCAAGCAAGTGCGCGCCTTCAACCACCTTGTCGATGAGAACAACTTCCAC
ACTGGTATCTTCATCACGCAGACGCCTATCTCACCCTCTGCCGTGCGCCTGCTTTCCGGCGTCCCCGGCCGCATC
TGCGAACACTTCCAGGAACAAGATCTGCTCGTCAACATCACCCGCCACGAGCTAGTCCCCAAGCACGTCCTGCTT
AGCCCCGAGGAGAAGGGCAAGCTTCTCGAGCGCTACCGTCTGAAGGAGTCTCAATTGCCCCGCATACAGATCTCG
GATCCTGTTGCCCGCTATCTTGGGTTGCGCCGTGGCCAGGTCGTTAAGATCATTCGCAAGTCTGAGACTGCAGGT
CGCTATGCCAGTTACCGCTGGGTCATTTAA
Gene >Pro_DTO377G3_2|g5933.t1
ATGGATGGGGATTCGGCACACTCCATGGAAGCCGAGCGCGAGATGACTCGGCTCTGGCGCACATTTAGAACAGTC
TATGAACTGCTCGCTGACCGGGTAGGTACCCCAGATCGAGTCCCTGACTTCTCAGTGTCTCTCCTATAATGCCCG
TTTACCCAAGGCTAACCATCGGCGACACACCAGGGCTACGAAGTATCTGATAACGAGCTGGTACTCCCGCTAGAA
GACTTCCGCGCAAAATATGCTGACCCTCTGGGCTACCCCGAGTACGTGAATCCCTGCGTCCACCGCCCCATTGTC
TTGAGATAGTGGAAATTTGAGCTAGTCAATGCCGGCACACGTCATTGAAAAGGCACATATCACTAATAGTTCCGC
AACAATAGTCGCACCAAGATGAAAATCCAAGCCCGCCCCACCGATACCATGAAGATGAAGTACACACCACTTCCC
AGCAAAGCAAACCCAAACCCCCAGCCAGACTGCGGCACAATTTACGTCGACTTCTGCCCCGACTCCTCAGGTGTC
GGAACCAAGCAAGTGCGCGCCTTCAACCACCTTGTCGATGAGAACAACTTCCACACTGGTATCTTCATCACGCAG
ACGCCTATCTCACCCTCTGCCGTGCGCCTGCTTTCCGGCGTCCCCGGCCGCATCTGCGAACACTTCCAGGAACAA
GATCTGCTCGTCAACATCACCCGCCACGAGCTAGTCCCCAAGCACGTCCTGCTTAGCCCCGAGGAGAAGGGCAAG
CTTCTCGAGCGCTACCGTCTGAAGGAGTCTCAATTGCCCCGCATACAGATCTCGGATCCTGTTGCCCGCTATCTT
GGGTTGCGCCGTGGCCAGGTCGTTAAGATCATTCGCAAGTCTGAGACTGCAGGTCGCTATGCCAGTTACCGCTGG
GTCATTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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