© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5921.t1 |
| Gene name | |
| Location | scaffold_15:155785..156596 |
| Strand | + |
| Gene length (bp) | 811 |
| Transcript length (bp) | 756 |
| Coding sequence length (bp) | 756 |
| Protein length (aa) | 252 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11937 | DUF3455 | Protein of unknown function (DUF3455) | 9.1E-47 | 73 | 250 |
| PF11693 | DUF2990 | Protein of unknown function (DUF2990) | 5.5E-32 | 8 | 70 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.46 | 0.0 | 3.25 |
| 5d_25C | Five days - 25 degrees Celsius | 0.12 | 0.0 | 0.47 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.30 | 0.0 | 0.82 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.37 | 0.0 | 1.01 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.26 | 0.0 | 0.75 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.95 | 0.0 | 2.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.202808 | no |
| 3d_25C | 7d_25C | 0.131259 | no |
| 3d_25C | 7d_15C | 0.121138 | no |
| 3d_25C | 7d_30C | 0.653486 | no |
| 3d_25C | 10d_25C | 0.159984 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.207786 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.253272 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.209645 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.340433 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5921.t1 MRFASLIICLAAVSLAAPTSFLDDAYNWTEEMAEFYGKVSQYINTAKHNIRAPGACDVSKIALPSYASGMASPSG LKPRYVALGRGTQNYTCADSTSNSTPAAVGAVARLYNATCIAANYPDLLAKLPNLAYTVSLPTNEDASFPPANLD LMGHHFFTDVTPEFNLNTTPKKQNGIVMAKKGGALDAPSGSVSGQYGAVPWLYLTSTDGTVGNYKSVYRVNTAAG SSPTTCKGMPLAFQMQYAAVYYFFGE* |
| Coding | >Pro_DTO377G3_2|g5921.t1 ATGCGCTTTGCTTCCCTCATCATCTGCCTGGCAGCAGTTTCGCTTGCTGCCCCAACAAGCTTCCTTGACGATGCA TACAACTGGACTGAGGAAATGGCAGAATTCTACGGAAAAGTGAGCCAGTACATCAACACCGCAAAACATAACATC AGAGCACCGGGGGCTTGCGATGTCTCTAAGATTGCCCTGCCTTCCTATGCTTCGGGAATGGCCAGCCCGTCAGGG CTAAAGCCAAGATACGTTGCACTCGGTCGAGGCACGCAGAACTACACATGTGCGGACTCTACTTCCAACTCCACA CCCGCGGCTGTAGGAGCTGTCGCAAGACTGTACAATGCCACATGTATTGCAGCCAACTACCCCGATCTCCTGGCA AAGCTCCCCAACCTTGCCTACACGGTTTCCCTACCGACCAACGAAGATGCCTCGTTCCCTCCCGCCAACCTCGAC TTGATGGGTCACCACTTCTTCACTGATGTAACCCCCGAGTTCAACTTGAACACCACTCCCAAAAAGCAGAATGGG ATTGTCATGGCAAAGAAGGGAGGTGCATTAGATGCACCCTCAGGTTCAGTGTCAGGGCAGTACGGTGCTGTGCCT TGGCTCTATCTCACTTCTACCGATGGCACGGTGGGCAACTACAAGAGTGTCTATCGAGTCAACACTGCCGCTGGA TCGTCACCAACGACCTGCAAGGGTATGCCACTCGCATTCCAAATGCAATATGCTGCGGTCTACTACTTTTTTGGA GAGTAA |
| Transcript | >Pro_DTO377G3_2|g5921.t1 ATGCGCTTTGCTTCCCTCATCATCTGCCTGGCAGCAGTTTCGCTTGCTGCCCCAACAAGCTTCCTTGACGATGCA TACAACTGGACTGAGGAAATGGCAGAATTCTACGGAAAAGTGAGCCAGTACATCAACACCGCAAAACATAACATC AGAGCACCGGGGGCTTGCGATGTCTCTAAGATTGCCCTGCCTTCCTATGCTTCGGGAATGGCCAGCCCGTCAGGG CTAAAGCCAAGATACGTTGCACTCGGTCGAGGCACGCAGAACTACACATGTGCGGACTCTACTTCCAACTCCACA CCCGCGGCTGTAGGAGCTGTCGCAAGACTGTACAATGCCACATGTATTGCAGCCAACTACCCCGATCTCCTGGCA AAGCTCCCCAACCTTGCCTACACGGTTTCCCTACCGACCAACGAAGATGCCTCGTTCCCTCCCGCCAACCTCGAC TTGATGGGTCACCACTTCTTCACTGATGTAACCCCCGAGTTCAACTTGAACACCACTCCCAAAAAGCAGAATGGG ATTGTCATGGCAAAGAAGGGAGGTGCATTAGATGCACCCTCAGGTTCAGTGTCAGGGCAGTACGGTGCTGTGCCT TGGCTCTATCTCACTTCTACCGATGGCACGGTGGGCAACTACAAGAGTGTCTATCGAGTCAACACTGCCGCTGGA TCGTCACCAACGACCTGCAAGGGTATGCCACTCGCATTCCAAATGCAATATGCTGCGGTCTACTACTTTTTTGGA GAGTAA |
| Gene | >Pro_DTO377G3_2|g5921.t1 ATGCGCTTTGCTTCCCTCATCATCTGCCTGGCAGCAGTTTCGCTTGCTGCCCCAACAAGCTTCCTTGACGATGCA TACAACTGGACTGAGGAAATGGCAGAATTCTACGGAAAAGTGAGCCAGTACATCAACACCGCAAAACATAACATC AGAGCACCGGGGGCTTGCGATGTCTCTAAGATTGCCCTGCCTTCCTATGCTTCGGGAATGGCCAGCCCGTCAGGG CTAAAGCCAAGATACGTTGCACTCGGTCGAGGCACGCAGGTATGACAAGCTCCTGAGATACTTTATTGAGTTACA TCGCTCATTATAGAACTAGAACTACACATGTGCGGACTCTACTTCCAACTCCACACCCGCGGCTGTAGGAGCTGT CGCAAGACTGTACAATGCCACATGTATTGCAGCCAACTACCCCGATCTCCTGGCAAAGCTCCCCAACCTTGCCTA CACGGTTTCCCTACCGACCAACGAAGATGCCTCGTTCCCTCCCGCCAACCTCGACTTGATGGGTCACCACTTCTT CACTGATGTAACCCCCGAGTTCAACTTGAACACCACTCCCAAAAAGCAGAATGGGATTGTCATGGCAAAGAAGGG AGGTGCATTAGATGCACCCTCAGGTTCAGTGTCAGGGCAGTACGGTGCTGTGCCTTGGCTCTATCTCACTTCTAC CGATGGCACGGTGGGCAACTACAAGAGTGTCTATCGAGTCAACACTGCCGCTGGATCGTCACCAACGACCTGCAA GGGTATGCCACTCGCATTCCAAATGCAATATGCTGCGGTCTACTACTTTTTTGGAGAGTAA |