Protein ID | Pro_DTO377G3_2|g5913.t1 |
Gene name | |
Location | scaffold_15:134322..135955 |
Strand | - |
Gene length (bp) | 1633 |
Transcript length (bp) | 1569 |
Coding sequence length (bp) | 1569 |
Protein length (aa) | 523 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00789 | UBX | UBX domain | 2.0E-10 | 411 | 503 |
PF14555 | UBA_4 | UBA-like domain | 9.9E-10 | 22 | 56 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 34 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 88.73 | 54.52 | 122.94 |
5d_25C | Five days - 25 degrees Celsius | 126.11 | 76.84 | 175.39 |
7d_25C | Seven days - 25 degrees Celsius | 157.89 | 95.23 | 220.54 |
10d_25C | Ten days - 25 degrees Celsius | 257.15 | 151.14 | 363.17 |
7d_15C | Seven days - 15 degrees Celsius | 120.97 | 73.64 | 168.31 |
7d_30C | Seven days - 30 degrees Celsius | 131.40 | 79.96 | 182.84 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.099168 | no |
3d_25C | 7d_25C | 0.004840 | yes |
3d_25C | 7d_15C | 0.158075 | no |
3d_25C | 7d_30C | 0.056008 | no |
3d_25C | 10d_25C | 0.000700 | yes |
5d_25C | 7d_25C | 0.359461 | no |
5d_25C | 7d_15C | 0.899619 | no |
5d_25C | 7d_30C | 0.899421 | no |
5d_25C | 10d_25C | 0.000700 | yes |
7d_25C | 7d_15C | 0.248473 | no |
7d_25C | 7d_30C | 0.463135 | no |
7d_25C | 10d_25C | 0.027043 | yes |
7d_15C | 7d_30C | 0.778720 | no |
7d_15C | 10d_25C | 0.000700 | yes |
7d_30C | 10d_25C | 0.000700 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5913.t1 MSQPEVDLDGLSDSEKSTLEMYMAVTSQEPSEAIPLLRRSQWNVQIAISKFFDGEGPDPVEEARAALDRPPPPQP NRRTQNLMTDDLTEHLSQVARATATDLAPRVNLQPADQPTYRPPFILSLLLTPFNLVYRILCSSFRLFGVLFPFL PRLFNRTANPALQGARRNTTGRRSLGPKDTAARFIREFEEEYESIPIPFLENGYNMALEKAHRDLKYLLVILLSP EHDDTDSWVRDTLLAPEVVEFINDPQNNLLVWGGNVRDSEAYQVANSLKCTKFPFAAVIVHTPNVSSTAMSVVGR IAGLTTPSEVVNKLRTVVTSNSEPLERLRSSRAEQQASRSLREEQDSAYERSLAIDRERARQRREAELARQREEQ EAADRQAAEEQRLRDLAQWKLWRGQSLSAEPGPDVKDAVRISVRLPSGERIMRKFAPDADIEEIYAVVECYEILQ EQDTERPVVSAPEGFVHHYGFRLVSPMPRVVYAVDEGGSIREKIGRGGNLLVEPIDEDEDDADDDEVVTDMS* |
Coding | >Pro_DTO377G3_2|g5913.t1 ATGTCACAACCCGAGGTTGACCTGGACGGGCTTTCTGATAGCGAGAAGTCTACGCTAGAAATGTACATGGCTGTC ACCAGTCAGGAACCTTCCGAAGCAATTCCGCTACTACGTCGGTCACAATGGAATGTGCAGATTGCCATATCCAAG TTTTTTGATGGCGAAGGCCCAGATCCCGTTGAAGAAGCCCGCGCTGCCTTGGATCGCCCCCCTCCCCCCCAACCC AATCGCCGAACCCAGAATTTAATGACCGACGATTTGACCGAACACTTGTCGCAAGTTGCTCGTGCCACAGCTACA GATTTGGCGCCACGAGTTAACTTACAGCCGGCAGACCAGCCAACCTACCGACCTCCATTTATTCTTAGCCTACTT CTCACTCCATTTAATTTGGTATACCGAATTCTTTGCAGTTCATTCCGCCTATTTGGTGTCCTCTTCCCTTTTTTG CCACGCTTGTTTAACAGGACAGCGAACCCCGCGCTGCAAGGTGCTCGCCGGAATACCACTGGCCGTCGATCCCTC GGTCCCAAAGATACTGCCGCTCGCTTTATCCGCGAGTTCGAAGAAGAATATGAATCTATCCCGATTCCATTCCTG GAGAACGGATACAACATGGCGCTGGAGAAAGCCCATCGCGACTTGAAGTACCTCCTGGTCATTCTCTTATCTCCA GAGCACGACGATACGGACAGCTGGGTCCGGGATACTCTGCTGGCACCTGAGGTCGTAGAATTCATCAATGACCCC CAGAACAACCTCCTGGTGTGGGGCGGCAACGTGCGAGATTCCGAAGCATACCAAGTCGCCAACTCATTGAAATGC ACCAAATTCCCCTTTGCAGCGGTCATCGTCCATACACCAAATGTTTCATCAACCGCGATGTCTGTTGTAGGACGG ATCGCAGGTCTCACGACGCCATCCGAGGTCGTGAACAAGCTCCGGACAGTCGTGACATCTAACAGCGAGCCCCTG GAGCGACTCCGATCTTCACGCGCGGAGCAACAAGCCTCGCGCAGCCTCCGCGAAGAGCAAGACTCAGCCTACGAG CGGTCGCTGGCGATCGACCGTGAACGGGCGCGCCAGCGCCGGGAAGCGGAGTTGGCACGTCAACGCGAAGAACAG GAAGCCGCTGACCGACAGGCGGCTGAAGAGCAACGGCTCCGCGATCTCGCCCAGTGGAAGCTTTGGCGCGGGCAA TCGCTTAGCGCGGAGCCCGGGCCGGATGTCAAAGATGCCGTTCGTATTAGCGTGCGGCTCCCGTCCGGCGAGCGC ATCATGCGTAAGTTTGCGCCAGATGCAGACATTGAAGAGATCTACGCGGTGGTTGAGTGCTACGAGATCTTACAG GAGCAGGATACAGAGCGTCCTGTGGTGAGTGCGCCGGAGGGGTTTGTGCACCACTACGGATTTCGACTGGTCTCA CCGATGCCTCGAGTAGTGTATGCTGTTGATGAGGGAGGGTCGATCAGAGAGAAGATTGGGCGTGGCGGTAATCTG TTGGTGGAACCAATCGACGAGGATGAAGACGATGCAGATGATGACGAGGTGGTGACCGACATGTCTTGA |
Transcript | >Pro_DTO377G3_2|g5913.t1 ATGTCACAACCCGAGGTTGACCTGGACGGGCTTTCTGATAGCGAGAAGTCTACGCTAGAAATGTACATGGCTGTC ACCAGTCAGGAACCTTCCGAAGCAATTCCGCTACTACGTCGGTCACAATGGAATGTGCAGATTGCCATATCCAAG TTTTTTGATGGCGAAGGCCCAGATCCCGTTGAAGAAGCCCGCGCTGCCTTGGATCGCCCCCCTCCCCCCCAACCC AATCGCCGAACCCAGAATTTAATGACCGACGATTTGACCGAACACTTGTCGCAAGTTGCTCGTGCCACAGCTACA GATTTGGCGCCACGAGTTAACTTACAGCCGGCAGACCAGCCAACCTACCGACCTCCATTTATTCTTAGCCTACTT CTCACTCCATTTAATTTGGTATACCGAATTCTTTGCAGTTCATTCCGCCTATTTGGTGTCCTCTTCCCTTTTTTG CCACGCTTGTTTAACAGGACAGCGAACCCCGCGCTGCAAGGTGCTCGCCGGAATACCACTGGCCGTCGATCCCTC GGTCCCAAAGATACTGCCGCTCGCTTTATCCGCGAGTTCGAAGAAGAATATGAATCTATCCCGATTCCATTCCTG GAGAACGGATACAACATGGCGCTGGAGAAAGCCCATCGCGACTTGAAGTACCTCCTGGTCATTCTCTTATCTCCA GAGCACGACGATACGGACAGCTGGGTCCGGGATACTCTGCTGGCACCTGAGGTCGTAGAATTCATCAATGACCCC CAGAACAACCTCCTGGTGTGGGGCGGCAACGTGCGAGATTCCGAAGCATACCAAGTCGCCAACTCATTGAAATGC ACCAAATTCCCCTTTGCAGCGGTCATCGTCCATACACCAAATGTTTCATCAACCGCGATGTCTGTTGTAGGACGG ATCGCAGGTCTCACGACGCCATCCGAGGTCGTGAACAAGCTCCGGACAGTCGTGACATCTAACAGCGAGCCCCTG GAGCGACTCCGATCTTCACGCGCGGAGCAACAAGCCTCGCGCAGCCTCCGCGAAGAGCAAGACTCAGCCTACGAG CGGTCGCTGGCGATCGACCGTGAACGGGCGCGCCAGCGCCGGGAAGCGGAGTTGGCACGTCAACGCGAAGAACAG GAAGCCGCTGACCGACAGGCGGCTGAAGAGCAACGGCTCCGCGATCTCGCCCAGTGGAAGCTTTGGCGCGGGCAA TCGCTTAGCGCGGAGCCCGGGCCGGATGTCAAAGATGCCGTTCGTATTAGCGTGCGGCTCCCGTCCGGCGAGCGC ATCATGCGTAAGTTTGCGCCAGATGCAGACATTGAAGAGATCTACGCGGTGGTTGAGTGCTACGAGATCTTACAG GAGCAGGATACAGAGCGTCCTGTGGTGAGTGCGCCGGAGGGGTTTGTGCACCACTACGGATTTCGACTGGTCTCA CCGATGCCTCGAGTAGTGTATGCTGTTGATGAGGGAGGGTCGATCAGAGAGAAGATTGGGCGTGGCGGTAATCTG TTGGTGGAACCAATCGACGAGGATGAAGACGATGCAGATGATGACGAGGTGGTGACCGACATGTCTTGA |
Gene | >Pro_DTO377G3_2|g5913.t1 ATGTCACAACCCGAGGTTGACCTGGACGGGCTTTCTGATAGCGAGAAGTCTACGCTAGAAATGTACATGGCTGTC ACCAGTCAGGAACCTTCCGAAGCAATTCCGCTACTACGTCGGTCACAATGGAATGTGCAGGTTGGTCTATCTTCC CCGACTTCCAATCAAGCGTACGAGCGTTTAACTGATCCCCGCATGATAGATTGCCATATCCAAGTTTTTTGATGG CGAAGGCCCAGATCCCGTTGAAGAAGCCCGCGCTGCCTTGGATCGCCCCCCTCCCCCCCAACCCAATCGCCGAAC CCAGAATTTAATGACCGACGATTTGACCGAACACTTGTCGCAAGTTGCTCGTGCCACAGCTACAGATTTGGCGCC ACGAGTTAACTTACAGCCGGCAGACCAGCCAACCTACCGACCTCCATTTATTCTTAGCCTACTTCTCACTCCATT TAATTTGGTATACCGAATTCTTTGCAGTTCATTCCGCCTATTTGGTGTCCTCTTCCCTTTTTTGCCACGCTTGTT TAACAGGACAGCGAACCCCGCGCTGCAAGGTGCTCGCCGGAATACCACTGGCCGTCGATCCCTCGGTCCCAAAGA TACTGCCGCTCGCTTTATCCGCGAGTTCGAAGAAGAATATGAATCTATCCCGATTCCATTCCTGGAGAACGGATA CAACATGGCGCTGGAGAAAGCCCATCGCGACTTGAAGTACCTCCTGGTCATTCTCTTATCTCCAGAGCACGACGA TACGGACAGCTGGGTCCGGGATACTCTGCTGGCACCTGAGGTCGTAGAATTCATCAATGACCCCCAGAACAACCT CCTGGTGTGGGGCGGCAACGTGCGAGATTCCGAAGCATACCAAGTCGCCAACTCATTGAAATGCACCAAATTCCC CTTTGCAGCGGTCATCGTCCATACACCAAATGTTTCATCAACCGCGATGTCTGTTGTAGGACGGATCGCAGGTCT CACGACGCCATCCGAGGTCGTGAACAAGCTCCGGACAGTCGTGACATCTAACAGCGAGCCCCTGGAGCGACTCCG ATCTTCACGCGCGGAGCAACAAGCCTCGCGCAGCCTCCGCGAAGAGCAAGACTCAGCCTACGAGCGGTCGCTGGC GATCGACCGTGAACGGGCGCGCCAGCGCCGGGAAGCGGAGTTGGCACGTCAACGCGAAGAACAGGAAGCCGCTGA CCGACAGGCGGCTGAAGAGCAACGGCTCCGCGATCTCGCCCAGTGGAAGCTTTGGCGCGGGCAATCGCTTAGCGC GGAGCCCGGGCCGGATGTCAAAGATGCCGTTCGTATTAGCGTGCGGCTCCCGTCCGGCGAGCGCATCATGCGTAA GTTTGCGCCAGATGCAGACATTGAAGAGATCTACGCGGTGGTTGAGTGCTACGAGATCTTACAGGAGCAGGATAC AGAGCGTCCTGTGGTGAGTGCGCCGGAGGGGTTTGTGCACCACTACGGATTTCGACTGGTCTCACCGATGCCTCG AGTAGTGTATGCTGTTGATGAGGGAGGGTCGATCAGAGAGAAGATTGGGCGTGGCGGTAATCTGTTGGTGGAACC AATCGACGAGGATGAAGACGATGCAGATGATGACGAGGTGGTGACCGACATGTCTTGA |