© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5905.t1 |
| Gene name | |
| Location | scaffold_15:115342..116357 |
| Strand | - |
| Gene length (bp) | 1015 |
| Transcript length (bp) | 555 |
| Coding sequence length (bp) | 555 |
| Protein length (aa) | 185 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00237 | Ribosomal_L22 | Ribosomal protein L22p/L17e | 3.1E-37 | 17 | 151 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005840 | ribosome | Yes |
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0008152 | metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0003674 | molecular_function | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043226 | organelle | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1246.52 | 737.40 | 1755.64 |
| 5d_25C | Five days - 25 degrees Celsius | 962.24 | 574.07 | 1350.41 |
| 7d_25C | Seven days - 25 degrees Celsius | 942.61 | 561.76 | 1323.46 |
| 10d_25C | Ten days - 25 degrees Celsius | 844.55 | 503.86 | 1185.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 1327.15 | 771.97 | 1882.33 |
| 7d_30C | Seven days - 30 degrees Celsius | 1002.13 | 598.02 | 1406.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.292546 | no |
| 3d_25C | 7d_25C | 0.245274 | no |
| 3d_25C | 7d_15C | 0.856570 | no |
| 3d_25C | 7d_30C | 0.388946 | no |
| 3d_25C | 10d_25C | 0.076395 | no |
| 5d_25C | 7d_25C | 0.955605 | no |
| 5d_25C | 7d_15C | 0.177661 | no |
| 5d_25C | 7d_30C | 0.907893 | no |
| 5d_25C | 10d_25C | 0.643871 | no |
| 7d_25C | 7d_15C | 0.143891 | no |
| 7d_25C | 7d_30C | 0.850014 | no |
| 7d_25C | 10d_25C | 0.705382 | no |
| 7d_15C | 7d_30C | 0.251875 | no |
| 7d_15C | 10d_25C | 0.043971 | yes |
| 7d_30C | 10d_25C | 0.521640 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5905.t1 MVRYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALTFLENVTKKTMAVPMRRYAGSTGRTAQGKQ FGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELIL TEAAEEVKKASTDKQVRLSSRQRGTQIRRALIEA* |
| Coding | >Pro_DTO377G3_2|g5905.t1 ATGGTCCGTTACGCCGCACAGGAGATCTCGGAGGCCAAGAGCGCCCGCGCGCGCGGCTCTTACCTCCGTGTCAGC TTCAAGAACACCCGTGAGACTGCCCAGGCCGTCAACGGCATGAAGCTGTCCAAGGCCCTCACTTTCCTCGAGAAC GTTACCAAGAAGACCATGGCCGTTCCCATGCGCCGCTACGCTGGCTCCACCGGTCGCACTGCTCAGGGAAAGCAG TTCGGTGTCTCCAAGGCCCGCTGGCCCGTGAAGTCCGCTGAGCACATCATCGATCTGCTCAAGAACGCCGAGGCC AACGCCGATGGCAAGGGTCTCGACACCAGCGCTCTGATCATCAAGCGCATCCAGGTCAACCAGGCTCCCAAGGGT CGCCGCCGCACTTACCGTGCTCACGGTCGTATCAACCCCTACATGACCAACCCCTGCCACATCGAGCTCATCCTC ACCGAGGCTGCCGAGGAGGTCAAGAAGGCCAGCACCGACAAGCAGGTCCGCCTCTCTTCCCGCCAGCGTGGCACC CAGATCCGCCGTGCTCTCATCGAGGCATAA |
| Transcript | >Pro_DTO377G3_2|g5905.t1 ATGGTCCGTTACGCCGCACAGGAGATCTCGGAGGCCAAGAGCGCCCGCGCGCGCGGCTCTTACCTCCGTGTCAGC TTCAAGAACACCCGTGAGACTGCCCAGGCCGTCAACGGCATGAAGCTGTCCAAGGCCCTCACTTTCCTCGAGAAC GTTACCAAGAAGACCATGGCCGTTCCCATGCGCCGCTACGCTGGCTCCACCGGTCGCACTGCTCAGGGAAAGCAG TTCGGTGTCTCCAAGGCCCGCTGGCCCGTGAAGTCCGCTGAGCACATCATCGATCTGCTCAAGAACGCCGAGGCC AACGCCGATGGCAAGGGTCTCGACACCAGCGCTCTGATCATCAAGCGCATCCAGGTCAACCAGGCTCCCAAGGGT CGCCGCCGCACTTACCGTGCTCACGGTCGTATCAACCCCTACATGACCAACCCCTGCCACATCGAGCTCATCCTC ACCGAGGCTGCCGAGGAGGTCAAGAAGGCCAGCACCGACAAGCAGGTCCGCCTCTCTTCCCGCCAGCGTGGCACC CAGATCCGCCGTGCTCTCATCGAGGCATAA |
| Gene | >Pro_DTO377G3_2|g5905.t1 ATGGTGAGTGCTGCATGTCCCTGTCATCGATAATGACCTTTCGCAATCCCATTCTCTACGAAATGCCACTTGTGT GATGCACATTCAATGTCCGATCGCCGGGTCGACTTTCGCTACATCACCAACACCCAACGACGATCCCATTGCTAA CGAGCGATGCTTTTCACAGGTCCGTTACGCCGCACAGGAGATCTCGGAGGCCAAGAGCGCCCGCGCGCGCGGCTC TTACCTCCGTGTCAGCTTCAAGAACACCCGTGAGACTGCCCAGGCCGTCAACGGCATGAAGCTGTCCAAGGCCCT CACTTTCCTCGAGAACGTTACCAAGAAGACCATGGCCGTTCCCATGCGCCGCTACGCTGGCTCCACCGGTCGCAC TGCTCAGGGTGAGTCGCCCTTTTGAAGAAATTTCCGGATGGATTGGAGTTTCGGATTGTGGGGAGGACGAATAGC ATCGCCAATATACGACAGCCACTGGGATATGAATTGAAATGACGAGGAAAATATGAATGGATTACGAGGATGGAT TTCTTGGCTTATTGGCGATGCTGTGCATTCTACAATCTGGATGAAAATTTGTGAATGGAGTCGAACATCGACTGA CAATTTTCGGTTTACAGGAAAGCAGTTCGGTGTCTCCAAGGCCCGCTGGCCCGTGAAGTCCGCTGAGCACATCAT CGATCTGCTCAAGAACGCCGAGGCCAACGCCGATGGCAAGGGTCTCGACACCAGCGCTCTGATCATCAAGCGCAT CCAGGTCAACCAGGCTCCCAAGGGTCGCCGCCGCACTTACCGTGCTCACGGTCGTGTACGTTTTATTAATATGTA CGGTTGAGTCGGTATCCAAATGCTGACCTTTTCTTTCCAGATCAACCCCTACATGACCAACCCCTGCCACATCGA GCTCATCCTCACCGAGGCTGCCGAGGAGGTCAAGAAGGCCAGCACCGACAAGCAGGTCCGCCTCTCTTCCCGCCA GCGTGGCACCCAGATCCGCCGTGCTCTCATCGAGGCATAA |