Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5898.t1
Gene name
Locationscaffold_15:104075..104740
Strand+
Gene length (bp)665
Transcript length (bp)507
Coding sequence length (bp)507
Protein length (aa) 169

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1.4E-44 20 163

GO

GO Term Description Terminal node
GO:0003755 peptidyl-prolyl cis-trans isomerase activity Yes
GO:0000413 protein peptidyl-prolyl isomerization Yes
GO:0043170 macromolecule metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0018193 peptidyl-amino acid modification No
GO:0006464 cellular protein modification process No
GO:0016853 isomerase activity No
GO:0140096 catalytic activity, acting on a protein No
GO:0071704 organic substance metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0036211 protein modification process No
GO:0003824 catalytic activity No
GO:0044238 primary metabolic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No
GO:0018208 peptidyl-proline modification No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0003674 molecular_function No
GO:0044267 cellular protein metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0043412 macromolecule modification No
GO:0019538 protein metabolic process No
GO:0016859 cis-trans isomerase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 41 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5898.t1
MSNPYFDIEYTSPKGQVENWGRIEFKLYDDVVPKTATNFRALATGEKGFGYAGSAFHRVIAGFMAQGGDFTRGNG
TGGKSIYGEKFADENFQTKHTKGGLLSMANAGPNTNGSQFFITFVKTPHLDGKHVVFGEVVSGQDILEKMESKSL
DRSGKTDGTIKIAASGTV*
Coding >Pro_DTO377G3_2|g5898.t1
ATGTCCAACCCCTATTTCGATATCGAATACACCTCGCCCAAGGGCCAGGTGGAGAATTGGGGCCGAATTGAGTTC
AAACTTTATGACGACGTCGTCCCCAAGACCGCGACCAACTTCCGCGCCCTCGCGACAGGCGAAAAGGGCTTCGGC
TATGCGGGCTCTGCTTTCCACCGCGTGATTGCCGGGTTCATGGCGCAGGGTGGTGACTTTACTCGTGGAAATGGA
ACGGGCGGCAAGTCTATCTACGGCGAGAAGTTTGCGGATGAGAACTTCCAGACCAAGCATACTAAGGGTGGATTG
CTCTCCATGGCAAATGCGGGACCTAATACCAATGGTTCTCAGTTCTTCATCACTTTTGTGAAAACTCCTCACTTG
GATGGTAAGCACGTTGTCTTCGGAGAGGTTGTCTCTGGTCAGGATATTCTCGAGAAGATGGAGAGCAAGAGCTTG
GATCGGTCTGGAAAGACTGATGGTACCATTAAGATTGCTGCTTCGGGAACAGTCTAA
Transcript >Pro_DTO377G3_2|g5898.t1
ATGTCCAACCCCTATTTCGATATCGAATACACCTCGCCCAAGGGCCAGGTGGAGAATTGGGGCCGAATTGAGTTC
AAACTTTATGACGACGTCGTCCCCAAGACCGCGACCAACTTCCGCGCCCTCGCGACAGGCGAAAAGGGCTTCGGC
TATGCGGGCTCTGCTTTCCACCGCGTGATTGCCGGGTTCATGGCGCAGGGTGGTGACTTTACTCGTGGAAATGGA
ACGGGCGGCAAGTCTATCTACGGCGAGAAGTTTGCGGATGAGAACTTCCAGACCAAGCATACTAAGGGTGGATTG
CTCTCCATGGCAAATGCGGGACCTAATACCAATGGTTCTCAGTTCTTCATCACTTTTGTGAAAACTCCTCACTTG
GATGGTAAGCACGTTGTCTTCGGAGAGGTTGTCTCTGGTCAGGATATTCTCGAGAAGATGGAGAGCAAGAGCTTG
GATCGGTCTGGAAAGACTGATGGTACCATTAAGATTGCTGCTTCGGGAACAGTCTAA
Gene >Pro_DTO377G3_2|g5898.t1
ATGTCCAACCCCTATTTCGATATCGAATACACCTCGCCCAAGGGCCAGGGTAAGTACACCCCCCTATCTCATCCC
AGCGACGCTAACACGCGTACTAGTGGAGAATTGGGGCCGAATTGAGTTCAAACTTTATGACGACGTCGTCCCCAA
GACCGCGACCAACTTCCGCGCCCTCGCGACAGGCGAAAAGGGCTTCGGCTATGCGGGCTCTGCTTTCCACCGCGT
GATTGCCGGGTTCATGGCGCAGGGTGGTGACTTTACTCGTGGAAATGTCAGTCACGGTATCTCCAGGGAAATCTG
AGCTCCAGCTAATCTTCACTTTCTTCTCAGGGAACGGGCGGCAAGTCTATCTACGGCGAGAAGTTTGCGGATGAG
AACTTCCAGACCAAGCATACTAAGGGTGGATTGCTCTCCATGGCAAATGCGGGACCTAATACCAATGGTTCTCAG
TTCTTCATCACTGTAAGTTGGAAATGAAATTGATGGGAGATGTCTTGTTCTGACTGGATTAGTTTGTGAAAACTC
CTCACTTGGATGGTAAGCACGTTGTCTTCGGAGAGGTTGTCTCTGGTCAGGATATTCTCGAGAAGATGGAGAGCA
AGAGCTTGGATCGGTCTGGAAAGACTGATGGTACCATTAAGATTGCTGCTTCGGGAACAGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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