Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5894.t1
Gene name
Locationscaffold_15:96847..97892
Strand-
Gene length (bp)1045
Transcript length (bp)990
Coding sequence length (bp)990
Protein length (aa) 330

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain 7.2E-44 22 160
PF02866 Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain 1.7E-26 163 327

GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0055114 oxidation-reduction process Yes
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Yes
GO:0008150 biological_process No
GO:0008152 metabolic process No
GO:0003824 catalytic activity No
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 38 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5894.t1
MQSNSARNSSKKPTIAIDLHPVKIAIVGAGNVGASTAYALLLSGLAAEIVLIDLNRRKAEGEVMDLNHAAPFSHQ
TKITLGDLEDCSEAAIVIITAGANQKPGQSRLDLLRINAKIIEDIVPKVTQMAPSTILLIASNPVDVLTFLSWKL
SGFPPSRVIGSGTVLDTARLRDTLGRRLDVDPSNIHADVVGEHGDSELPVWSRANISGIPLAEFSQQAGQDAKDI
MKQSFQDTRNAAYEIIKLKGMTDYGISAGLVRIVETILRNENTLMTVSTAGTFAGVSEIALSMPKKVNRTGAHHV
IDIKLSEEESRELEKSAHTIKSSIESLKS*
Coding >Pro_DTO377G3_2|g5894.t1
ATGCAATCCAATTCAGCCCGAAATTCTTCAAAGAAGCCTACAATTGCCATCGATCTCCATCCGGTCAAAATCGCC
ATCGTCGGCGCAGGCAATGTCGGGGCTTCTACCGCTTACGCTCTTCTTCTGAGTGGTCTCGCAGCCGAAATCGTC
CTGATCGACCTTAATCGACGCAAGGCCGAAGGAGAAGTAATGGACTTGAACCATGCAGCTCCCTTCTCACACCAG
ACCAAGATCACACTTGGTGATCTTGAAGACTGCTCTGAGGCAGCGATTGTCATAATCACAGCTGGCGCAAACCAG
AAGCCCGGACAGTCGCGGTTGGATCTCTTACGGATCAATGCCAAAATCATCGAGGACATTGTTCCAAAAGTCACG
CAAATGGCCCCGTCCACCATCCTTCTTATAGCGAGTAACCCAGTCGATGTCTTGACCTTCCTGAGCTGGAAATTG
TCTGGGTTCCCGCCGAGCCGCGTGATCGGGTCCGGTACCGTTCTGGACACCGCACGCTTGCGCGACACTCTAGGC
CGACGATTGGATGTTGACCCGAGTAACATTCATGCAGACGTTGTTGGGGAGCATGGTGATAGCGAATTGCCAGTG
TGGTCGCGGGCCAATATATCAGGTATCCCGTTGGCGGAGTTTTCCCAGCAGGCTGGTCAGGATGCAAAGGATATC
ATGAAACAATCATTCCAAGACACCAGGAATGCTGCTTATGAGATAATCAAGCTGAAAGGCATGACGGACTATGGT
ATCTCTGCTGGCTTGGTGAGGATCGTGGAGACTATACTCAGGAATGAGAACACGCTTATGACTGTGTCAACGGCT
GGAACCTTTGCAGGCGTGAGTGAAATCGCGTTGAGCATGCCGAAAAAGGTAAACCGAACCGGGGCCCACCATGTT
ATCGACATCAAGCTGTCTGAAGAAGAAAGTCGGGAGCTGGAAAAGTCGGCACACACTATCAAATCTAGCATAGAA
TCTTTGAAGTCATAA
Transcript >Pro_DTO377G3_2|g5894.t1
ATGCAATCCAATTCAGCCCGAAATTCTTCAAAGAAGCCTACAATTGCCATCGATCTCCATCCGGTCAAAATCGCC
ATCGTCGGCGCAGGCAATGTCGGGGCTTCTACCGCTTACGCTCTTCTTCTGAGTGGTCTCGCAGCCGAAATCGTC
CTGATCGACCTTAATCGACGCAAGGCCGAAGGAGAAGTAATGGACTTGAACCATGCAGCTCCCTTCTCACACCAG
ACCAAGATCACACTTGGTGATCTTGAAGACTGCTCTGAGGCAGCGATTGTCATAATCACAGCTGGCGCAAACCAG
AAGCCCGGACAGTCGCGGTTGGATCTCTTACGGATCAATGCCAAAATCATCGAGGACATTGTTCCAAAAGTCACG
CAAATGGCCCCGTCCACCATCCTTCTTATAGCGAGTAACCCAGTCGATGTCTTGACCTTCCTGAGCTGGAAATTG
TCTGGGTTCCCGCCGAGCCGCGTGATCGGGTCCGGTACCGTTCTGGACACCGCACGCTTGCGCGACACTCTAGGC
CGACGATTGGATGTTGACCCGAGTAACATTCATGCAGACGTTGTTGGGGAGCATGGTGATAGCGAATTGCCAGTG
TGGTCGCGGGCCAATATATCAGGTATCCCGTTGGCGGAGTTTTCCCAGCAGGCTGGTCAGGATGCAAAGGATATC
ATGAAACAATCATTCCAAGACACCAGGAATGCTGCTTATGAGATAATCAAGCTGAAAGGCATGACGGACTATGGT
ATCTCTGCTGGCTTGGTGAGGATCGTGGAGACTATACTCAGGAATGAGAACACGCTTATGACTGTGTCAACGGCT
GGAACCTTTGCAGGCGTGAGTGAAATCGCGTTGAGCATGCCGAAAAAGGTAAACCGAACCGGGGCCCACCATGTT
ATCGACATCAAGCTGTCTGAAGAAGAAAGTCGGGAGCTGGAAAAGTCGGCACACACTATCAAATCTAGCATAGAA
TCTTTGAAGTCATAA
Gene >Pro_DTO377G3_2|g5894.t1
ATGCAATCCAATTCAGCCCGAAATTCTTCAAAGAAGCCTACAATTGCCATCGATCTCCATGTTAGTTTTGAAGCC
TCACTTGATAAATGCATTGAACCCATACTGATTACAAAAGCCGGTCAAAATCGCCATCGTCGGCGCAGGCAATGT
CGGGGCTTCTACCGCTTACGCTCTTCTTCTGAGTGGTCTCGCAGCCGAAATCGTCCTGATCGACCTTAATCGACG
CAAGGCCGAAGGAGAAGTAATGGACTTGAACCATGCAGCTCCCTTCTCACACCAGACCAAGATCACACTTGGTGA
TCTTGAAGACTGCTCTGAGGCAGCGATTGTCATAATCACAGCTGGCGCAAACCAGAAGCCCGGACAGTCGCGGTT
GGATCTCTTACGGATCAATGCCAAAATCATCGAGGACATTGTTCCAAAAGTCACGCAAATGGCCCCGTCCACCAT
CCTTCTTATAGCGAGTAACCCAGTCGATGTCTTGACCTTCCTGAGCTGGAAATTGTCTGGGTTCCCGCCGAGCCG
CGTGATCGGGTCCGGTACCGTTCTGGACACCGCACGCTTGCGCGACACTCTAGGCCGACGATTGGATGTTGACCC
GAGTAACATTCATGCAGACGTTGTTGGGGAGCATGGTGATAGCGAATTGCCAGTGTGGTCGCGGGCCAATATATC
AGGTATCCCGTTGGCGGAGTTTTCCCAGCAGGCTGGTCAGGATGCAAAGGATATCATGAAACAATCATTCCAAGA
CACCAGGAATGCTGCTTATGAGATAATCAAGCTGAAAGGCATGACGGACTATGGTATCTCTGCTGGCTTGGTGAG
GATCGTGGAGACTATACTCAGGAATGAGAACACGCTTATGACTGTGTCAACGGCTGGAACCTTTGCAGGCGTGAG
TGAAATCGCGTTGAGCATGCCGAAAAAGGTAAACCGAACCGGGGCCCACCATGTTATCGACATCAAGCTGTCTGA
AGAAGAAAGTCGGGAGCTGGAAAAGTCGGCACACACTATCAAATCTAGCATAGAATCTTTGAAGTCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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