Protein ID | Pro_DTO377G3_2|g5889.t1 |
Gene name | |
Location | scaffold_15:84670..87683 |
Strand | + |
Gene length (bp) | 3013 |
Transcript length (bp) | 2958 |
Coding sequence length (bp) | 2958 |
Protein length (aa) | 986 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12708 | Pectate_lyase_3 | Pectate lyase superfamily protein | 2.0E-88 | 75 | 299 |
PF12708 | Pectate_lyase_3 | Pectate lyase superfamily protein | 1.4E-12 | 618 | 676 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 29 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 127.12 | 74.44 | 179.81 |
5d_25C | Five days - 25 degrees Celsius | 76.58 | 42.69 | 110.47 |
7d_25C | Seven days - 25 degrees Celsius | 66.70 | 37.00 | 96.39 |
10d_25C | Ten days - 25 degrees Celsius | 53.17 | 28.92 | 77.41 |
7d_15C | Seven days - 15 degrees Celsius | 81.74 | 33.66 | 129.82 |
7d_30C | Seven days - 30 degrees Celsius | 86.91 | 45.69 | 128.12 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.024417 | yes |
3d_25C | 7d_25C | 0.003197 | yes |
3d_25C | 7d_15C | 0.132536 | no |
3d_25C | 7d_30C | 0.121015 | no |
3d_25C | 10d_25C | 0.000700 | yes |
5d_25C | 7d_25C | 0.654388 | no |
5d_25C | 7d_15C | 0.874762 | no |
5d_25C | 7d_30C | 0.697243 | no |
5d_25C | 10d_25C | 0.155094 | no |
7d_25C | 7d_15C | 0.546944 | no |
7d_25C | 7d_30C | 0.331485 | no |
7d_25C | 10d_25C | 0.419820 | no |
7d_15C | 7d_30C | 0.886201 | no |
7d_15C | 10d_25C | 0.156817 | no |
7d_30C | 10d_25C | 0.042422 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5889.t1 MAVLQTSIAIFVAHIILLLGLPASLVAAVPLSVPVSPVNNVLATTEKRSTSSYWVANVERQGVVPFATSTDYKIF RNVMDYGAKGDGSTDDTVAINKAISSGGRCGKGCDSSTTTPAIVYFPPGTYVVSKPIVQYYYTQIVGDAVELPVI KASAKFAGMAVIDADPYEDNGDNWFTNQNNFFRAIRNLVIDLTSVPEGSGAGIHWQVGQATSLQNIRFEMVKGGG DANKQQGIFMDNGSGGFMSDLTFNGGNYGMFLGNQQFTTRNLTFNGCQTAIFMNWNWAWTFKSVQINNCEVGLNM STSPSNQTVGSVLLLDSKLTNTPTGIVTAWTQKSIPVGGGDLILDNVDFSGSKIAVAGINGNTILAGGSVVDNWV QGNTYTPSKTVTKRASESEPEVVTVIQTVTETIMACPASYGLSSTSLVSSDVPAPAKTASLESAPAPSPVPGVST SSDSDRIAQTSSISVSNSVLSILGSSSEASEVSEPTSAAAPSSEAPATSVVSVGSSPSSVVSTKQSALPVVSTAV PVTSNVVPVTSIAASVTSTAASAKITSSSSAVSQATQSGSDSSTATCGASGAVASARTQSTLKTSSKPASLLNGG AIFERSKPLYEDVAASSFVSVKSAGAKGDGTTDDTAAIQKVFDSYKDGQVIYFDHGAYVITSTVKIPKDIKITGE IWPMLMAYGEKFADQENPVPVFQVGQKGDTGSVEMSDLIITTKGAAPGAILMEWNVAGSSQGSVGMWDVHFRIGG AAGTELQSDTCPKTPKQKTTPNKECMAAFMLLHITKTGSAYLENTWFWTADHELDLKDHNQINVYTGRGVLIESQ NPVWLWGTSSEHHQLYNYQVSSAKNVFMGLIQSETPYYQSNPTALTPFTPQDSWNDPDFSNCTTNSCRKSWGLRV LGSSDVFIYGAGLYSFFENYAQSCLNSEDCQENMVEVDCSDVKLYGLSTKASVNMITSSDGKALVLEKPNKSNYC STIALFEQSA* |
Coding | >Pro_DTO377G3_2|g5889.t1 ATGGCCGTTCTACAAACCTCCATCGCGATCTTTGTCGCCCATATCATCCTTTTGCTCGGTTTACCAGCCTCTTTG GTCGCAGCTGTGCCACTCTCCGTGCCTGTATCTCCTGTGAACAACGTCTTGGCCACTACCGAAAAGAGATCCACC TCAAGCTACTGGGTCGCCAATGTTGAGCGTCAGGGTGTTGTCCCCTTTGCCACGAGCACCGACTACAAGATCTTC CGAAATGTAATGGACTATGGTGCTAAGGGTGACGGTTCTACTGACGACACTGTCGCTATCAACAAGGCTATTTCT TCTGGGGGCCGTTGTGGCAAGGGCTGTGATTCTTCTACCACCACTCCTGCTATCGTCTACTTCCCCCCTGGTACC TATGTTGTCTCGAAGCCCATCGTGCAGTACTACTACACCCAGATCGTTGGTGACGCTGTCGAACTGCCCGTCATC AAGGCCTCCGCCAAATTCGCGGGTATGGCTGTGATAGATGCCGATCCCTACGAGGACAATGGCGACAACTGGTTC ACCAACCAGAACAACTTCTTCCGCGCCATTCGCAACTTGGTCATTGACCTGACCAGCGTCCCAGAAGGCTCCGGT GCCGGTATCCACTGGCAGGTCGGCCAGGCTACGAGCTTGCAGAACATTCGGTTCGAGATGGTCAAGGGTGGTGGT GACGCCAACAAGCAACAGGGTATCTTCATGGACAACGGATCCGGTGGTTTCATGTCCGACTTGACTTTCAACGGT GGTAACTACGGCATGTTCCTCGGTAACCAGCAGTTCACTACTCGTAACCTGACCTTCAACGGCTGCCAGACTGCC ATCTTCATGAACTGGAACTGGGCCTGGACTTTCAAGTCAGTCCAGATCAACAACTGCGAGGTTGGCCTCAATATG TCTACCTCGCCTTCCAACCAGACTGTTGGCTCCGTGTTGCTGCTGGACAGCAAGCTCACCAACACCCCCACTGGT ATCGTCACTGCCTGGACTCAGAAGAGCATCCCCGTTGGTGGTGGTGATCTGATTTTGGATAACGTGGATTTCTCT GGCTCCAAGATTGCTGTTGCCGGTATCAATGGCAATACCATCCTGGCTGGTGGCTCTGTTGTCGACAACTGGGTT CAGGGTAACACCTACACCCCGTCTAAGACTGTCACCAAGCGCGCCAGCGAGTCTGAGCCTGAGGTGGTCACCGTT ATTCAGACCGTTACGGAGACTATCATGGCCTGTCCCGCTTCCTACGGTCTTTCCAGCACCAGCTTGGTGAGCAGC GACGTTCCTGCCCCGGCGAAGACTGCGTCACTTGAATCTGCTCCCGCTCCTTCGCCTGTTCCCGGTGTTAGTACC AGCAGCGATTCTGATCGCATTGCTCAGACTTCCTCGATCTCTGTCTCCAACAGTGTCCTTTCCATTCTCGGATCC TCTTCTGAGGCCTCTGAAGTCTCTGAGCCCACTTCCGCAGCTGCTCCTTCTAGTGAGGCCCCTGCCACTTCTGTG GTGTCTGTTGGTTCTTCGCCCTCTAGTGTGGTTTCTACCAAGCAATCTGCTCTGCCTGTCGTCTCCACTGCTGTT CCTGTCACCTCCAATGTTGTGCCTGTCACCTCTATTGCTGCGTCCGTCACCTCCACTGCTGCGTCTGCTAAAATT ACTAGCAGCAGCTCTGCAGTTAGTCAGGCCACCCAGTCTGGTAGTGACAGCAGCACTGCCACTTGCGGCGCCTCG GGCGCCGTTGCCTCCGCACGTACCCAGAGCACTCTGAAGACTTCTTCTAAGCCCGCTAGCCTTCTCAATGGAGGT GCTATCTTCGAGCGGTCCAAGCCTCTGTACGAAGACGTCGCCGCATCCTCTTTCGTCAGCGTCAAGTCGGCTGGT GCCAAGGGTGATGGAACCACTGACGACACTGCGGCCATCCAGAAGGTGTTTGACAGCTACAAAGATGGCCAGGTC ATCTACTTTGATCACGGTGCCTATGTCATCACCTCCACCGTCAAGATCCCCAAGGATATCAAGATTACTGGTGAG ATCTGGCCCATGCTCATGGCATACGGCGAGAAGTTTGCCGACCAAGAGAACCCTGTTCCTGTCTTCCAGGTCGGC CAAAAGGGTGACACTGGCTCTGTCGAGATGAGCGACCTCATCATCACCACCAAGGGCGCCGCCCCTGGTGCTATC CTCATGGAGTGGAACGTTGCTGGCTCTTCCCAAGGCTCCGTTGGTATGTGGGATGTTCACTTCCGCATTGGTGGT GCCGCTGGTACTGAGCTGCAGAGTGACACTTGCCCCAAGACCCCTAAGCAGAAGACCACCCCTAATAAGGAGTGC ATGGCCGCCTTCATGCTCCTGCACATCACCAAGACGGGCAGTGCCTATCTCGAGAACACCTGGTTCTGGACTGCC GATCACGAGCTCGACCTCAAGGATCACAACCAGATCAATGTCTACACCGGTCGTGGTGTGCTCATCGAGTCGCAA AACCCCGTTTGGCTGTGGGGTACCTCTTCAGAGCACCACCAGCTGTACAACTACCAGGTCTCGAGTGCCAAGAAC GTCTTCATGGGTCTCATTCAATCTGAGACTCCGTACTACCAGTCCAACCCGACTGCGCTGACCCCCTTCACCCCG CAAGACTCCTGGAACGACCCCGACTTCTCGAACTGCACGACAAACTCCTGCCGCAAGTCCTGGGGTCTGCGTGTT CTCGGCTCCTCGGACGTCTTCATCTACGGCGCCGGTCTCTACAGTTTCTTCGAGAACTACGCCCAATCCTGTCTC AACTCTGAGGACTGCCAGGAGAACATGGTCGAGGTCGACTGTTCGGACGTCAAGCTGTACGGTCTCAGCACCAAA GCCTCTGTCAACATGATTACCTCATCTGACGGCAAGGCTCTGGTCCTTGAGAAGCCTAATAAGAGCAACTACTGC TCCACCATCGCTCTCTTTGAGCAATCTGCTTAG |
Transcript | >Pro_DTO377G3_2|g5889.t1 ATGGCCGTTCTACAAACCTCCATCGCGATCTTTGTCGCCCATATCATCCTTTTGCTCGGTTTACCAGCCTCTTTG GTCGCAGCTGTGCCACTCTCCGTGCCTGTATCTCCTGTGAACAACGTCTTGGCCACTACCGAAAAGAGATCCACC TCAAGCTACTGGGTCGCCAATGTTGAGCGTCAGGGTGTTGTCCCCTTTGCCACGAGCACCGACTACAAGATCTTC CGAAATGTAATGGACTATGGTGCTAAGGGTGACGGTTCTACTGACGACACTGTCGCTATCAACAAGGCTATTTCT TCTGGGGGCCGTTGTGGCAAGGGCTGTGATTCTTCTACCACCACTCCTGCTATCGTCTACTTCCCCCCTGGTACC TATGTTGTCTCGAAGCCCATCGTGCAGTACTACTACACCCAGATCGTTGGTGACGCTGTCGAACTGCCCGTCATC AAGGCCTCCGCCAAATTCGCGGGTATGGCTGTGATAGATGCCGATCCCTACGAGGACAATGGCGACAACTGGTTC ACCAACCAGAACAACTTCTTCCGCGCCATTCGCAACTTGGTCATTGACCTGACCAGCGTCCCAGAAGGCTCCGGT GCCGGTATCCACTGGCAGGTCGGCCAGGCTACGAGCTTGCAGAACATTCGGTTCGAGATGGTCAAGGGTGGTGGT GACGCCAACAAGCAACAGGGTATCTTCATGGACAACGGATCCGGTGGTTTCATGTCCGACTTGACTTTCAACGGT GGTAACTACGGCATGTTCCTCGGTAACCAGCAGTTCACTACTCGTAACCTGACCTTCAACGGCTGCCAGACTGCC ATCTTCATGAACTGGAACTGGGCCTGGACTTTCAAGTCAGTCCAGATCAACAACTGCGAGGTTGGCCTCAATATG TCTACCTCGCCTTCCAACCAGACTGTTGGCTCCGTGTTGCTGCTGGACAGCAAGCTCACCAACACCCCCACTGGT ATCGTCACTGCCTGGACTCAGAAGAGCATCCCCGTTGGTGGTGGTGATCTGATTTTGGATAACGTGGATTTCTCT GGCTCCAAGATTGCTGTTGCCGGTATCAATGGCAATACCATCCTGGCTGGTGGCTCTGTTGTCGACAACTGGGTT CAGGGTAACACCTACACCCCGTCTAAGACTGTCACCAAGCGCGCCAGCGAGTCTGAGCCTGAGGTGGTCACCGTT ATTCAGACCGTTACGGAGACTATCATGGCCTGTCCCGCTTCCTACGGTCTTTCCAGCACCAGCTTGGTGAGCAGC GACGTTCCTGCCCCGGCGAAGACTGCGTCACTTGAATCTGCTCCCGCTCCTTCGCCTGTTCCCGGTGTTAGTACC AGCAGCGATTCTGATCGCATTGCTCAGACTTCCTCGATCTCTGTCTCCAACAGTGTCCTTTCCATTCTCGGATCC TCTTCTGAGGCCTCTGAAGTCTCTGAGCCCACTTCCGCAGCTGCTCCTTCTAGTGAGGCCCCTGCCACTTCTGTG GTGTCTGTTGGTTCTTCGCCCTCTAGTGTGGTTTCTACCAAGCAATCTGCTCTGCCTGTCGTCTCCACTGCTGTT CCTGTCACCTCCAATGTTGTGCCTGTCACCTCTATTGCTGCGTCCGTCACCTCCACTGCTGCGTCTGCTAAAATT ACTAGCAGCAGCTCTGCAGTTAGTCAGGCCACCCAGTCTGGTAGTGACAGCAGCACTGCCACTTGCGGCGCCTCG GGCGCCGTTGCCTCCGCACGTACCCAGAGCACTCTGAAGACTTCTTCTAAGCCCGCTAGCCTTCTCAATGGAGGT GCTATCTTCGAGCGGTCCAAGCCTCTGTACGAAGACGTCGCCGCATCCTCTTTCGTCAGCGTCAAGTCGGCTGGT GCCAAGGGTGATGGAACCACTGACGACACTGCGGCCATCCAGAAGGTGTTTGACAGCTACAAAGATGGCCAGGTC ATCTACTTTGATCACGGTGCCTATGTCATCACCTCCACCGTCAAGATCCCCAAGGATATCAAGATTACTGGTGAG ATCTGGCCCATGCTCATGGCATACGGCGAGAAGTTTGCCGACCAAGAGAACCCTGTTCCTGTCTTCCAGGTCGGC CAAAAGGGTGACACTGGCTCTGTCGAGATGAGCGACCTCATCATCACCACCAAGGGCGCCGCCCCTGGTGCTATC CTCATGGAGTGGAACGTTGCTGGCTCTTCCCAAGGCTCCGTTGGTATGTGGGATGTTCACTTCCGCATTGGTGGT GCCGCTGGTACTGAGCTGCAGAGTGACACTTGCCCCAAGACCCCTAAGCAGAAGACCACCCCTAATAAGGAGTGC ATGGCCGCCTTCATGCTCCTGCACATCACCAAGACGGGCAGTGCCTATCTCGAGAACACCTGGTTCTGGACTGCC GATCACGAGCTCGACCTCAAGGATCACAACCAGATCAATGTCTACACCGGTCGTGGTGTGCTCATCGAGTCGCAA AACCCCGTTTGGCTGTGGGGTACCTCTTCAGAGCACCACCAGCTGTACAACTACCAGGTCTCGAGTGCCAAGAAC GTCTTCATGGGTCTCATTCAATCTGAGACTCCGTACTACCAGTCCAACCCGACTGCGCTGACCCCCTTCACCCCG CAAGACTCCTGGAACGACCCCGACTTCTCGAACTGCACGACAAACTCCTGCCGCAAGTCCTGGGGTCTGCGTGTT CTCGGCTCCTCGGACGTCTTCATCTACGGCGCCGGTCTCTACAGTTTCTTCGAGAACTACGCCCAATCCTGTCTC AACTCTGAGGACTGCCAGGAGAACATGGTCGAGGTCGACTGTTCGGACGTCAAGCTGTACGGTCTCAGCACCAAA GCCTCTGTCAACATGATTACCTCATCTGACGGCAAGGCTCTGGTCCTTGAGAAGCCTAATAAGAGCAACTACTGC TCCACCATCGCTCTCTTTGAGCAATCTGCTTAG |
Gene | >Pro_DTO377G3_2|g5889.t1 ATGGCCGTTCTACAAACCTCCATCGCGATCTTTGTCGCCCATATCATCCTTTTGCTCGGTTTACCAGCCTCTTTG GTCGCAGCTGTGCCACTCTCCGTGCCTGTATCTCCTGTGAACAACGTCTTGGCCACTACCGAAAAGAGATCCACC TCAAGCTACTGGGTCGCCAATGTTGAGCGTCAGGGTGTTGTCCCCTTTGCCACGAGCACCGACTACAAGATCTTC CGAAATGTAATGGACTATGGTGCTAAGGGTCAGTCATTCATCTTACTTCTATACCCTCGGGCAATATGCTAACTA TGTCCCAGGTGACGGTTCTACTGACGACACTGTCGCTATCAACAAGGCTATTTCTTCTGGGGGCCGTTGTGGCAA GGGCTGTGATTCTTCTACCACCACTCCTGCTATCGTCTACTTCCCCCCTGGTACCTATGTTGTCTCGAAGCCCAT CGTGCAGTACTACTACACCCAGATCGTTGGTGACGCTGTCGAACTGCCCGTCATCAAGGCCTCCGCCAAATTCGC GGGTATGGCTGTGATAGATGCCGATCCCTACGAGGACAATGGCGACAACTGGTTCACCAACCAGAACAACTTCTT CCGCGCCATTCGCAACTTGGTCATTGACCTGACCAGCGTCCCAGAAGGCTCCGGTGCCGGTATCCACTGGCAGGT CGGCCAGGCTACGAGCTTGCAGAACATTCGGTTCGAGATGGTCAAGGGTGGTGGTGACGCCAACAAGCAACAGGG TATCTTCATGGACAACGGATCCGGTGGTTTCATGTCCGACTTGACTTTCAACGGTGGTAACTACGGCATGTTCCT CGGTAACCAGCAGTTCACTACTCGTAACCTGACCTTCAACGGCTGCCAGACTGCCATCTTCATGAACTGGAACTG GGCCTGGACTTTCAAGTCAGTCCAGATCAACAACTGCGAGGTTGGCCTCAATATGTCTACCTCGCCTTCCAACCA GACTGTTGGCTCCGTGTTGCTGCTGGACAGCAAGCTCACCAACACCCCCACTGGTATCGTCACTGCCTGGACTCA GAAGAGCATCCCCGTTGGTGGTGGTGATCTGATTTTGGATAACGTGGATTTCTCTGGCTCCAAGATTGCTGTTGC CGGTATCAATGGCAATACCATCCTGGCTGGTGGCTCTGTTGTCGACAACTGGGTTCAGGGTAACACCTACACCCC GTCTAAGACTGTCACCAAGCGCGCCAGCGAGTCTGAGCCTGAGGTGGTCACCGTTATTCAGACCGTTACGGAGAC TATCATGGCCTGTCCCGCTTCCTACGGTCTTTCCAGCACCAGCTTGGTGAGCAGCGACGTTCCTGCCCCGGCGAA GACTGCGTCACTTGAATCTGCTCCCGCTCCTTCGCCTGTTCCCGGTGTTAGTACCAGCAGCGATTCTGATCGCAT TGCTCAGACTTCCTCGATCTCTGTCTCCAACAGTGTCCTTTCCATTCTCGGATCCTCTTCTGAGGCCTCTGAAGT CTCTGAGCCCACTTCCGCAGCTGCTCCTTCTAGTGAGGCCCCTGCCACTTCTGTGGTGTCTGTTGGTTCTTCGCC CTCTAGTGTGGTTTCTACCAAGCAATCTGCTCTGCCTGTCGTCTCCACTGCTGTTCCTGTCACCTCCAATGTTGT GCCTGTCACCTCTATTGCTGCGTCCGTCACCTCCACTGCTGCGTCTGCTAAAATTACTAGCAGCAGCTCTGCAGT TAGTCAGGCCACCCAGTCTGGTAGTGACAGCAGCACTGCCACTTGCGGCGCCTCGGGCGCCGTTGCCTCCGCACG TACCCAGAGCACTCTGAAGACTTCTTCTAAGCCCGCTAGCCTTCTCAATGGAGGTGCTATCTTCGAGCGGTCCAA GCCTCTGTACGAAGACGTCGCCGCATCCTCTTTCGTCAGCGTCAAGTCGGCTGGTGCCAAGGGTGATGGAACCAC TGACGACACTGCGGCCATCCAGAAGGTGTTTGACAGCTACAAAGATGGCCAGGTCATCTACTTTGATCACGGTGC CTATGTCATCACCTCCACCGTCAAGATCCCCAAGGATATCAAGATTACTGGTGAGATCTGGCCCATGCTCATGGC ATACGGCGAGAAGTTTGCCGACCAAGAGAACCCTGTTCCTGTCTTCCAGGTCGGCCAAAAGGGTGACACTGGCTC TGTCGAGATGAGCGACCTCATCATCACCACCAAGGGCGCCGCCCCTGGTGCTATCCTCATGGAGTGGAACGTTGC TGGCTCTTCCCAAGGCTCCGTTGGTATGTGGGATGTTCACTTCCGCATTGGTGGTGCCGCTGGTACTGAGCTGCA GAGTGACACTTGCCCCAAGACCCCTAAGCAGAAGACCACCCCTAATAAGGAGTGCATGGCCGCCTTCATGCTCCT GCACATCACCAAGACGGGCAGTGCCTATCTCGAGAACACCTGGTTCTGGACTGCCGATCACGAGCTCGACCTCAA GGATCACAACCAGATCAATGTCTACACCGGTCGTGGTGTGCTCATCGAGTCGCAAAACCCCGTTTGGCTGTGGGG TACCTCTTCAGAGCACCACCAGCTGTACAACTACCAGGTCTCGAGTGCCAAGAACGTCTTCATGGGTCTCATTCA ATCTGAGACTCCGTACTACCAGTCCAACCCGACTGCGCTGACCCCCTTCACCCCGCAAGACTCCTGGAACGACCC CGACTTCTCGAACTGCACGACAAACTCCTGCCGCAAGTCCTGGGGTCTGCGTGTTCTCGGCTCCTCGGACGTCTT CATCTACGGCGCCGGTCTCTACAGTTTCTTCGAGAACTACGCCCAATCCTGTCTCAACTCTGAGGACTGCCAGGA GAACATGGTCGAGGTCGACTGTTCGGACGTCAAGCTGTACGGTCTCAGCACCAAAGCCTCTGTCAACATGATTAC CTCATCTGACGGCAAGGCTCTGGTCCTTGAGAAGCCTAATAAGAGCAACTACTGCTCCACCATCGCTCTCTTTGA GCAATCTGCTTAG |