© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g5882.t1 |
| Gene name | |
| Location | scaffold_15:59598..60359 |
| Strand | + |
| Gene length (bp) | 761 |
| Transcript length (bp) | 711 |
| Coding sequence length (bp) | 711 |
| Protein length (aa) | 237 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00877 | NLPC_P60 | NlpC/P60 family | 9.6E-19 | 117 | 215 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 245.76 | 143.30 | 348.21 |
| 5d_25C | Five days - 25 degrees Celsius | 88.37 | 45.12 | 131.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.75 | 7.22 | 32.28 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.83 | 5.79 | 35.88 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.75 | 0.55 | 12.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 1026.48 | 459.51 | 1593.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.000700 | yes |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.016361 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.925634 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.010411 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5882.t1 MHFISLIAFSLTTAITAVSAYPITGDTVNCRSGPGTSHTVVKTYKKAHDVKITCQTTGDSISGNNIWDKTSDGCY VADYYVKTGSNSYVTAKCSSSGSTSSTGTGKAIIAAAEKEKGLPYVWGGGGCKGPSGGGFDCSGLTQYAVCQALK KTIPRVAQDQYNSSLGKRYPRAQAKPGDLLFWATGGDCKNKVVHVGIFINDKTMINAAHTGTPVREQAIWTSYGG ESICPYVMRFT* |
| Coding | >Pro_DTO377G3_2|g5882.t1 ATGCATTTCATCTCCCTCATTGCCTTCTCCCTCACAACCGCTATAACAGCGGTCAGCGCCTACCCCATCACCGGC GACACCGTCAACTGCCGCTCCGGCCCTGGAACAAGCCATACAGTCGTCAAGACATACAAAAAAGCCCACGATGTC AAAATCACCTGCCAAACCACCGGAGACTCAATCTCCGGCAACAACATCTGGGACAAGACCTCCGACGGCTGCTAT GTAGCTGACTACTACGTGAAAACCGGCAGCAACAGCTACGTAACCGCCAAATGCAGTAGCAGTGGCAGCACCAGC AGCACCGGCACCGGAAAAGCCATCATCGCCGCAGCCGAGAAGGAGAAAGGCCTCCCGTACGTCTGGGGCGGCGGT GGTTGCAAGGGTCCCTCCGGCGGCGGCTTTGACTGCTCCGGTCTGACACAGTATGCTGTCTGCCAGGCTTTGAAG AAGACAATTCCGCGTGTCGCGCAGGACCAGTATAACTCCAGCTTGGGCAAGCGGTATCCTCGTGCGCAGGCTAAG CCTGGTGATCTCTTGTTCTGGGCTACTGGTGGTGATTGCAAGAACAAGGTTGTGCATGTCGGTATCTTTATCAAT GATAAGACGATGATTAATGCTGCTCACACTGGTACGCCGGTGCGTGAGCAGGCTATTTGGACTTCCTATGGTGGA GAGAGTATCTGTCCTTATGTTATGAGATTCACTTGA |
| Transcript | >Pro_DTO377G3_2|g5882.t1 ATGCATTTCATCTCCCTCATTGCCTTCTCCCTCACAACCGCTATAACAGCGGTCAGCGCCTACCCCATCACCGGC GACACCGTCAACTGCCGCTCCGGCCCTGGAACAAGCCATACAGTCGTCAAGACATACAAAAAAGCCCACGATGTC AAAATCACCTGCCAAACCACCGGAGACTCAATCTCCGGCAACAACATCTGGGACAAGACCTCCGACGGCTGCTAT GTAGCTGACTACTACGTGAAAACCGGCAGCAACAGCTACGTAACCGCCAAATGCAGTAGCAGTGGCAGCACCAGC AGCACCGGCACCGGAAAAGCCATCATCGCCGCAGCCGAGAAGGAGAAAGGCCTCCCGTACGTCTGGGGCGGCGGT GGTTGCAAGGGTCCCTCCGGCGGCGGCTTTGACTGCTCCGGTCTGACACAGTATGCTGTCTGCCAGGCTTTGAAG AAGACAATTCCGCGTGTCGCGCAGGACCAGTATAACTCCAGCTTGGGCAAGCGGTATCCTCGTGCGCAGGCTAAG CCTGGTGATCTCTTGTTCTGGGCTACTGGTGGTGATTGCAAGAACAAGGTTGTGCATGTCGGTATCTTTATCAAT GATAAGACGATGATTAATGCTGCTCACACTGGTACGCCGGTGCGTGAGCAGGCTATTTGGACTTCCTATGGTGGA GAGAGTATCTGTCCTTATGTTATGAGATTCACTTGA |
| Gene | >Pro_DTO377G3_2|g5882.t1 ATGCATTTCATCTCCCTCATTGCCTTCTCCCTCACAACCGCTATAACAGCGGTCAGCGCCTACCCCATCACCGGC GACACCGTCAACTGCCGCTCCGGCCCTGGAACAAGCCATACAGTCGTCAAGACATACAAAAAAGCCCACGATGTC AAAATCACCTGCCAAACCACCGGAGACTCAATCTCCGGCAACAACATCTGGGACAAGACCTCCGACGGCTGCTAT GTAGCTGACTACTACGTGAAAACCGGCAGCAACAGCTACGTAACCGCCAAATGCAGTAGCAGTGGCAGCACCAGC AGCACCGGCACCGGAAAAGCCATCATCGCCGCAGCCGAGAAGGAGAAAGGCCTCCCGTACGTCTGGGGCGGCGGT GGTTGCAAGGGTCCCTCCGGCGGCGGCTTTGACTGCTCCGGTCTGACACAGTATGCTGTCTGCCAGGCTTTGAAG AAGACAATTCCGCGTGTCGCGCAGGACCAGTATAACTCCAGCTTGGGCAAGCGGTATCCTCGTGCGCAGGCTAAG CCTGGTGATCTCTTGTTCTGGGCTACTGGTGGTGATTGCAAGAACAAGGTTGTGCATGTCGGTATCTTTATCAAT GATAAGACGATGATTAATGCTGCTCACACTGGTACGCCGGTGCGTGAGCAGGCTATTTGGACTTCCTATGGTGGA GAGAGTATCTGTCCTTATGTTATGAGGTATGTATATCATTCTTGGGTTTTGGGTTGTCATACTAACTGGTGTATA GATTCACTTGA |