© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g585.t1 |
| Gene name | |
| Location | scaffold_01:1508888..1510554 |
| Strand | - |
| Gene length (bp) | 1666 |
| Transcript length (bp) | 1602 |
| Coding sequence length (bp) | 1602 |
| Protein length (aa) | 534 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06824 | Glyco_hydro_125 | Metal-independent alpha-mannosidase (GH125) | 6.8E-179 | 83 | 513 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 90.16 | 54.99 | 125.33 |
| 5d_25C | Five days - 25 degrees Celsius | 68.13 | 41.40 | 94.85 |
| 7d_25C | Seven days - 25 degrees Celsius | 62.08 | 37.73 | 86.43 |
| 10d_25C | Ten days - 25 degrees Celsius | 55.64 | 33.64 | 77.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 98.56 | 60.50 | 136.62 |
| 7d_30C | Seven days - 30 degrees Celsius | 72.89 | 43.67 | 102.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.225367 | no |
| 3d_25C | 7d_25C | 0.082612 | no |
| 3d_25C | 7d_15C | 0.757578 | no |
| 3d_25C | 7d_30C | 0.389166 | no |
| 3d_25C | 10d_25C | 0.021417 | yes |
| 5d_25C | 7d_25C | 0.748618 | no |
| 5d_25C | 7d_15C | 0.083510 | no |
| 5d_25C | 7d_30C | 0.829330 | no |
| 5d_25C | 10d_25C | 0.406040 | no |
| 7d_25C | 7d_15C | 0.024892 | yes |
| 7d_25C | 7d_30C | 0.543309 | no |
| 7d_25C | 10d_25C | 0.699684 | no |
| 7d_15C | 7d_30C | 0.175871 | no |
| 7d_15C | 10d_25C | 0.003197 | yes |
| 7d_30C | 10d_25C | 0.246480 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g585.t1 MNIPTALAIALLGLQASALPDRDDPAILRRACPDYTSYASTPHAPYSGGPLNLPFQRPAEPCRTFSSPAVEKVID DITSRLVDKDLAQLFRNAFPNTLDTTIRWHTNGSTSSGTNAKRSGAQWTGVQTFVVTGDINAEWLRDSTNQLTNY QKLAAKDESLYSLILGAINTQSEFVIQSPYCNAFQPPALSGIKPEASSQKDTVHPAYDSSFVFECKYELDSLAHF LQLGTEFHENTGSIAFLTDRWYKAVQTVLETIDAESQPTFNTQGQFVQNQYTFQRETTIGTETLNLAGVGNPLNS ETGLIRSAFRPSDDATILGFFIPPNAMMSVQLQKTAKVIKAAGGSPSLVADLQERGIKLAKAVRDHGIVKHPKYG DVYAFEVDGYGSRILMDDANIPSLLSLPYLGFVDKSDPVYKNTRKMITDKASNPYYLVGTQFHGIAGPHIGLEHA WPMSLLVQAMTSDDDAEIIGNLNLVRNSSLLGLVHESINVANIKDYTRPWFAWANSVFAQTVLKIAAERPHLIFG INAKPYTV* |
| Coding | >Pro_DTO377G3_2|g585.t1 ATGAATATTCCTACGGCACTCGCAATCGCTCTGCTGGGCCTTCAGGCCAGCGCTCTCCCAGACAGAGACGACCCA GCCATCTTGCGACGTGCCTGCCCAGACTACACCTCCTATGCATCAACACCGCACGCTCCCTATAGTGGTGGTCCC TTGAATCTTCCCTTTCAGCGACCTGCGGAACCATGTCGGACATTTTCATCGCCCGCGGTGGAGAAGGTCATTGAC GATATCACCTCGCGCCTAGTCGATAAAGATCTTGCCCAGCTATTCCGAAATGCATTTCCAAATACCTTAGACACT ACAATTCGTTGGCATACAAACGGATCGACATCATCCGGCACCAATGCCAAGCGATCCGGCGCGCAATGGACCGGA GTGCAGACCTTCGTCGTGACGGGCGATATCAACGCCGAGTGGCTGCGTGACTCAACCAACCAGCTCACAAATTAC CAGAAACTAGCTGCTAAGGACGAGAGTCTTTACTCGCTGATACTAGGTGCAATCAACACTCAGTCCGAGTTTGTC ATCCAGTCGCCCTATTGCAATGCTTTCCAGCCACCGGCTCTCAGCGGCATCAAGCCAGAAGCCAGTAGCCAAAAA GACACTGTGCATCCTGCATATGACAGTTCTTTTGTATTTGAGTGCAAGTATGAACTTGACTCTCTGGCCCATTTC CTACAGCTAGGCACTGAGTTCCACGAAAATACTGGTTCAATTGCGTTCTTGACCGACCGCTGGTATAAAGCGGTG CAAACTGTGCTAGAGACCATCGACGCGGAGTCTCAGCCCACATTCAATACTCAGGGCCAGTTCGTCCAAAATCAG TACACGTTTCAACGAGAGACTACCATTGGCACTGAGACCCTCAACCTAGCTGGTGTTGGCAACCCGCTAAATAGC GAGACTGGCCTAATTCGCAGCGCATTCCGCCCCAGTGATGACGCTACGATCCTGGGATTCTTCATTCCGCCCAAC GCTATGATGTCCGTACAGCTCCAAAAGACAGCGAAAGTCATCAAGGCAGCCGGTGGGTCCCCAAGTCTCGTTGCG GACCTGCAGGAACGCGGTATCAAGCTAGCCAAGGCAGTTCGCGATCACGGCATTGTTAAACACCCCAAATATGGA GATGTCTACGCATTCGAAGTTGACGGGTATGGGTCGCGTATTCTGATGGACGATGCCAACATCCCCTCACTGCTC TCGTTGCCCTACCTCGGCTTTGTGGACAAATCAGACCCCGTCTACAAGAATACACGCAAAATGATCACCGACAAG GCTTCCAATCCATATTATCTGGTGGGTACACAGTTCCACGGCATTGCTGGTCCACATATCGGTCTAGAGCACGCC TGGCCCATGTCTCTACTTGTTCAAGCTATGACCTCTGACGACGACGCTGAGATCATTGGAAACCTCAATCTCGTT CGTAATTCTAGCTTGCTTGGGCTTGTTCACGAATCTATCAATGTTGCCAACATAAAGGACTATACCCGTCCTTGG TTCGCATGGGCGAACTCGGTCTTCGCGCAGACTGTTCTGAAGATTGCTGCTGAGAGGCCTCATCTGATCTTCGGT ATCAATGCAAAGCCTTATACTGTCTAA |
| Transcript | >Pro_DTO377G3_2|g585.t1 ATGAATATTCCTACGGCACTCGCAATCGCTCTGCTGGGCCTTCAGGCCAGCGCTCTCCCAGACAGAGACGACCCA GCCATCTTGCGACGTGCCTGCCCAGACTACACCTCCTATGCATCAACACCGCACGCTCCCTATAGTGGTGGTCCC TTGAATCTTCCCTTTCAGCGACCTGCGGAACCATGTCGGACATTTTCATCGCCCGCGGTGGAGAAGGTCATTGAC GATATCACCTCGCGCCTAGTCGATAAAGATCTTGCCCAGCTATTCCGAAATGCATTTCCAAATACCTTAGACACT ACAATTCGTTGGCATACAAACGGATCGACATCATCCGGCACCAATGCCAAGCGATCCGGCGCGCAATGGACCGGA GTGCAGACCTTCGTCGTGACGGGCGATATCAACGCCGAGTGGCTGCGTGACTCAACCAACCAGCTCACAAATTAC CAGAAACTAGCTGCTAAGGACGAGAGTCTTTACTCGCTGATACTAGGTGCAATCAACACTCAGTCCGAGTTTGTC ATCCAGTCGCCCTATTGCAATGCTTTCCAGCCACCGGCTCTCAGCGGCATCAAGCCAGAAGCCAGTAGCCAAAAA GACACTGTGCATCCTGCATATGACAGTTCTTTTGTATTTGAGTGCAAGTATGAACTTGACTCTCTGGCCCATTTC CTACAGCTAGGCACTGAGTTCCACGAAAATACTGGTTCAATTGCGTTCTTGACCGACCGCTGGTATAAAGCGGTG CAAACTGTGCTAGAGACCATCGACGCGGAGTCTCAGCCCACATTCAATACTCAGGGCCAGTTCGTCCAAAATCAG TACACGTTTCAACGAGAGACTACCATTGGCACTGAGACCCTCAACCTAGCTGGTGTTGGCAACCCGCTAAATAGC GAGACTGGCCTAATTCGCAGCGCATTCCGCCCCAGTGATGACGCTACGATCCTGGGATTCTTCATTCCGCCCAAC GCTATGATGTCCGTACAGCTCCAAAAGACAGCGAAAGTCATCAAGGCAGCCGGTGGGTCCCCAAGTCTCGTTGCG GACCTGCAGGAACGCGGTATCAAGCTAGCCAAGGCAGTTCGCGATCACGGCATTGTTAAACACCCCAAATATGGA GATGTCTACGCATTCGAAGTTGACGGGTATGGGTCGCGTATTCTGATGGACGATGCCAACATCCCCTCACTGCTC TCGTTGCCCTACCTCGGCTTTGTGGACAAATCAGACCCCGTCTACAAGAATACACGCAAAATGATCACCGACAAG GCTTCCAATCCATATTATCTGGTGGGTACACAGTTCCACGGCATTGCTGGTCCACATATCGGTCTAGAGCACGCC TGGCCCATGTCTCTACTTGTTCAAGCTATGACCTCTGACGACGACGCTGAGATCATTGGAAACCTCAATCTCGTT CGTAATTCTAGCTTGCTTGGGCTTGTTCACGAATCTATCAATGTTGCCAACATAAAGGACTATACCCGTCCTTGG TTCGCATGGGCGAACTCGGTCTTCGCGCAGACTGTTCTGAAGATTGCTGCTGAGAGGCCTCATCTGATCTTCGGT ATCAATGCAAAGCCTTATACTGTCTAA |
| Gene | >Pro_DTO377G3_2|g585.t1 ATGAATATTCCTACGGCACTCGCAATCGCTCTGCTGGGCCTTCAGGCCAGCGCTCTCCCAGACAGAGACGACCCA GCCATCTTGCGACGTGCCTGCCCAGACTACACCTCCTATGCATCAACACCGCAGTGAGTGTCAATACCCCCATTG AGATATGTCAAGTATTCGCTAAACAAAACTTCAATATTACAGCGCTCCCTATAGTGGTGGTCCCTTGAATCTTCC CTTTCAGCGACCTGCGGAACCATGTCGGACATTTTCATCGCCCGCGGTGGAGAAGGTCATTGACGATATCACCTC GCGCCTAGTCGATAAAGATCTTGCCCAGCTATTCCGAAATGCATTTCCAAATACCTTAGACACTACAATTCGTTG GCATACAAACGGATCGACATCATCCGGCACCAATGCCAAGCGATCCGGCGCGCAATGGACCGGAGTGCAGACCTT CGTCGTGACGGGCGATATCAACGCCGAGTGGCTGCGTGACTCAACCAACCAGCTCACAAATTACCAGAAACTAGC TGCTAAGGACGAGAGTCTTTACTCGCTGATACTAGGTGCAATCAACACTCAGTCCGAGTTTGTCATCCAGTCGCC CTATTGCAATGCTTTCCAGCCACCGGCTCTCAGCGGCATCAAGCCAGAAGCCAGTAGCCAAAAAGACACTGTGCA TCCTGCATATGACAGTTCTTTTGTATTTGAGTGCAAGTATGAACTTGACTCTCTGGCCCATTTCCTACAGCTAGG CACTGAGTTCCACGAAAATACTGGTTCAATTGCGTTCTTGACCGACCGCTGGTATAAAGCGGTGCAAACTGTGCT AGAGACCATCGACGCGGAGTCTCAGCCCACATTCAATACTCAGGGCCAGTTCGTCCAAAATCAGTACACGTTTCA ACGAGAGACTACCATTGGCACTGAGACCCTCAACCTAGCTGGTGTTGGCAACCCGCTAAATAGCGAGACTGGCCT AATTCGCAGCGCATTCCGCCCCAGTGATGACGCTACGATCCTGGGATTCTTCATTCCGCCCAACGCTATGATGTC CGTACAGCTCCAAAAGACAGCGAAAGTCATCAAGGCAGCCGGTGGGTCCCCAAGTCTCGTTGCGGACCTGCAGGA ACGCGGTATCAAGCTAGCCAAGGCAGTTCGCGATCACGGCATTGTTAAACACCCCAAATATGGAGATGTCTACGC ATTCGAAGTTGACGGGTATGGGTCGCGTATTCTGATGGACGATGCCAACATCCCCTCACTGCTCTCGTTGCCCTA CCTCGGCTTTGTGGACAAATCAGACCCCGTCTACAAGAATACACGCAAAATGATCACCGACAAGGCTTCCAATCC ATATTATCTGGTGGGTACACAGTTCCACGGCATTGCTGGTCCACATATCGGTCTAGAGCACGCCTGGCCCATGTC TCTACTTGTTCAAGCTATGACCTCTGACGACGACGCTGAGATCATTGGAAACCTCAATCTCGTTCGTAATTCTAG CTTGCTTGGGCTTGTTCACGAATCTATCAATGTTGCCAACATAAAGGACTATACCCGTCCTTGGTTCGCATGGGC GAACTCGGTCTTCGCGCAGACTGTTCTGAAGATTGCTGCTGAGAGGCCTCATCTGATCTTCGGTATCAATGCAAA GCCTTATACTGTCTAA |