© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g584.t1 |
| Gene name | |
| Location | scaffold_01:1507243..1508744 |
| Strand | + |
| Gene length (bp) | 1501 |
| Transcript length (bp) | 1317 |
| Coding sequence length (bp) | 1317 |
| Protein length (aa) | 439 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain | 5.6E-29 | 262 | 416 |
| PF02771 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain | 7.5E-25 | 31 | 153 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 3.1E-24 | 157 | 250 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.41 | 1.76 | 9.06 |
| 5d_25C | Five days - 25 degrees Celsius | 6.95 | 2.48 | 11.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.66 | 2.34 | 10.97 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.05 | 1.09 | 7.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.21 | 2.52 | 11.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.10 | 4.52 | 17.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.572735 | no |
| 3d_25C | 7d_25C | 0.657851 | no |
| 3d_25C | 7d_15C | 0.506791 | no |
| 3d_25C | 7d_30C | 0.039155 | yes |
| 3d_25C | 10d_25C | 0.533155 | no |
| 5d_25C | 7d_25C | 0.937896 | no |
| 5d_25C | 7d_15C | 0.947318 | no |
| 5d_25C | 7d_30C | 0.197302 | no |
| 5d_25C | 10d_25C | 0.165436 | no |
| 7d_25C | 7d_15C | 0.878130 | no |
| 7d_25C | 7d_30C | 0.147227 | no |
| 7d_25C | 10d_25C | 0.206712 | no |
| 7d_15C | 7d_30C | 0.240999 | no |
| 7d_15C | 10d_25C | 0.133838 | no |
| 7d_30C | 10d_25C | 0.005235 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 912 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g584.t1 MAKILRPATAPYSEPLLPQLDIRNPYYTNLNHNLRATVREYIDIYITPYAAEWEEAGQVPEAVRRHYCKLGYSIV HPLTSEEDSAGLSLPGNVPREKWDTWCSLIVTDELTRVGYVGVIWGLGGGNGIGCPPVARFGNDEQRKRWLPGVA RGDIRFCLGITEPDAGSDVANIQTTAQRDGNHYIVNGAKKWITNGIWADYCTAAVRTGGPGRSGISLLVIPLATA GVTRRRMHNSGVNASGSTFIEFEDVRVPVENLIGQENKGFPLIMSNFNPERLTLACASLRLSRVCAEDAYNYAIQ RETFGSPLIEKQAIQSKIFKFGLMIEPAYAFMEQLVNILELTKDRPSDDVNIGGMTALLKVMSTRALEKSVREAQ QIMGGAGYNKAGKGARIEQISRDARVHVVGGGSEEIMAGLALREETKAIRTRRKALEKRQSKV* |
| Coding | >Pro_DTO377G3_2|g584.t1 ATGGCCAAAATCCTCCGCCCCGCAACAGCTCCGTACAGCGAGCCCCTTCTCCCGCAACTAGACATCCGCAACCCC TACTATACAAACCTGAACCACAACCTGCGCGCCACCGTGCGCGAATATATCGATATATACATCACCCCCTACGCC GCAGAGTGGGAAGAAGCAGGCCAAGTCCCCGAAGCCGTACGCCGGCACTATTGCAAGCTGGGCTATAGCATCGTG CACCCCCTCACGAGCGAGGAGGACTCAGCCGGCCTCTCTCTGCCTGGGAATGTGCCGCGCGAGAAGTGGGATACG TGGTGCTCACTTATTGTAACGGACGAGCTCACGCGCGTTGGATATGTCGGTGTGATTTGGGGGCTTGGTGGTGGT AATGGGATTGGATGTCCGCCTGTTGCGCGTTTTGGGAATGATGAGCAGAGGAAGAGGTGGCTTCCTGGTGTTGCG AGGGGGGATATTCGATTTTGTTTGGGGATTACCGAGCCGGATGCGGGCTCTGATGTTGCCAATATCCAGACTACA GCCCAGCGGGATGGCAATCACTATATTGTGAATGGGGCGAAGAAATGGATTACCAATGGTATCTGGGCTGACTAT TGCACTGCTGCTGTTAGGACCGGTGGTCCTGGAAGGTCTGGTATCAGCTTGCTTGTTATTCCCTTGGCTACTGCC GGAGTGACTCGCAGGCGTATGCATAACTCGGGTGTGAATGCCAGTGGCTCAACCTTTATCGAGTTTGAAGATGTG CGTGTTCCTGTCGAAAACCTCATCGGCCAAGAGAACAAAGGATTTCCCCTTATCATGTCGAACTTCAACCCAGAG CGCCTTACTCTGGCGTGTGCGTCATTGCGACTCTCCCGAGTTTGTGCCGAAGATGCCTACAACTACGCCATCCAA CGCGAGACCTTTGGATCCCCACTGATTGAAAAGCAAGCAATTCAATCCAAGATCTTCAAATTCGGCCTCATGATT GAGCCAGCCTATGCCTTCATGGAACAGCTCGTGAACATCCTTGAACTTACCAAAGACCGTCCTTCCGACGACGTC AACATTGGTGGTATGACTGCCTTGCTTAAAGTCATGTCGACCAGGGCTCTGGAGAAGAGTGTTCGAGAAGCACAG CAGATTATGGGAGGTGCGGGCTATAACAAGGCTGGCAAAGGTGCTAGAATCGAGCAGATTAGTCGTGATGCTCGG GTTCATGTAGTCGGCGGCGGAAGTGAGGAGATTATGGCGGGACTGGCGCTGAGGGAGGAGACAAAGGCTATTCGC ACTCGGAGAAAGGCACTTGAGAAGAGACAGTCTAAAGTATGA |
| Transcript | >Pro_DTO377G3_2|g584.t1 ATGGCCAAAATCCTCCGCCCCGCAACAGCTCCGTACAGCGAGCCCCTTCTCCCGCAACTAGACATCCGCAACCCC TACTATACAAACCTGAACCACAACCTGCGCGCCACCGTGCGCGAATATATCGATATATACATCACCCCCTACGCC GCAGAGTGGGAAGAAGCAGGCCAAGTCCCCGAAGCCGTACGCCGGCACTATTGCAAGCTGGGCTATAGCATCGTG CACCCCCTCACGAGCGAGGAGGACTCAGCCGGCCTCTCTCTGCCTGGGAATGTGCCGCGCGAGAAGTGGGATACG TGGTGCTCACTTATTGTAACGGACGAGCTCACGCGCGTTGGATATGTCGGTGTGATTTGGGGGCTTGGTGGTGGT AATGGGATTGGATGTCCGCCTGTTGCGCGTTTTGGGAATGATGAGCAGAGGAAGAGGTGGCTTCCTGGTGTTGCG AGGGGGGATATTCGATTTTGTTTGGGGATTACCGAGCCGGATGCGGGCTCTGATGTTGCCAATATCCAGACTACA GCCCAGCGGGATGGCAATCACTATATTGTGAATGGGGCGAAGAAATGGATTACCAATGGTATCTGGGCTGACTAT TGCACTGCTGCTGTTAGGACCGGTGGTCCTGGAAGGTCTGGTATCAGCTTGCTTGTTATTCCCTTGGCTACTGCC GGAGTGACTCGCAGGCGTATGCATAACTCGGGTGTGAATGCCAGTGGCTCAACCTTTATCGAGTTTGAAGATGTG CGTGTTCCTGTCGAAAACCTCATCGGCCAAGAGAACAAAGGATTTCCCCTTATCATGTCGAACTTCAACCCAGAG CGCCTTACTCTGGCGTGTGCGTCATTGCGACTCTCCCGAGTTTGTGCCGAAGATGCCTACAACTACGCCATCCAA CGCGAGACCTTTGGATCCCCACTGATTGAAAAGCAAGCAATTCAATCCAAGATCTTCAAATTCGGCCTCATGATT GAGCCAGCCTATGCCTTCATGGAACAGCTCGTGAACATCCTTGAACTTACCAAAGACCGTCCTTCCGACGACGTC AACATTGGTGGTATGACTGCCTTGCTTAAAGTCATGTCGACCAGGGCTCTGGAGAAGAGTGTTCGAGAAGCACAG CAGATTATGGGAGGTGCGGGCTATAACAAGGCTGGCAAAGGTGCTAGAATCGAGCAGATTAGTCGTGATGCTCGG GTTCATGTAGTCGGCGGCGGAAGTGAGGAGATTATGGCGGGACTGGCGCTGAGGGAGGAGACAAAGGCTATTCGC ACTCGGAGAAAGGCACTTGAGAAGAGACAGTCTAAAGTATGA |
| Gene | >Pro_DTO377G3_2|g584.t1 ATGGCCAAAATCCTCCGCCCCGCAACAGCTCCGTACAGCGAGCCCCTTCTCCCGCAACTAGACATCCGCAACCCC TACTATACAAACCTGAACCACAACCTGCGCGCCACCGTGCGCGAATATATCGATATATACATCACCCCCTACGCC GCAGAGTGGGAAGAAGCAGGCCAAGTCCCCGAAGCCGTACGCCGGCACTATTGCAAGCTGGGCTATAGCATCGTG CACCCCCTCACGAGCGAGGAGGACTCAGCCGGCCTCTCTCTGCCTGGGAATGTGCCGCGCGAGAAGTGGGATACG TGGTGCTCACTTATTGTAACGGACGAGCTCACGCGCGTTGGATATGTCGGTGTGATTTGGGGGCTTGGTGGTGGT AATGGGATTGGATGTCCGCCTGTTGCGCGTTTTGGGAATGATGAGCAGAGGAAGAGGTGGCTTCCTGGTGTTGCG AGGGGGGATATTCGATTTTGTTTGGGGATTACCGAGCCGGATGGTATGTGGATGTTTACTTCAGAGGTATAACTA TCTTCAGGATATGGGTTGCTGACTTTGTTTACTTTTTGCAGCGGGCTCTGATGTTGCCAATATCCAGACTACAGC CCAGCGGGATGGCAATCACTATATTGTGAATGGGGCGAAGAAATGGATTACCAATGGTATCTGGGCTGACTATTG CACTGCTGCTGTTAGGACCGGTGGTCCTGGAAGGTCTGGTATCAGCTTGCTTGTTATTCCCTTGGCTACTGCCGG AGTGACTCGCAGGCGTATGCATAACTCGGGTGTGAATGCCAGTGGTGGGTGCTTCTTTCTCAATATGACCTGTGA AGAAAGACATCGCCAATCAACACAACTATAGGCTCAACCTTTATCGAGTTTGAAGATGTGCGTGTTCCTGTCGAA AACCTCATCGGCCAAGAGAACAAAGGATTTCCCCTTATCATGTCGAGTGAGTTGCCTTACCAAGGGTCTGAATTG GCTGCTAATATTTTCTTCAGACTTCAACCCAGAGCGCCTTACTCTGGCGTGTGCGTCATTGCGACTCTCCCGAGT TTGTGCCGAAGATGCCTACAACTACGCCATCCAACGCGAGACCTTTGGATCCCCACTGATTGAAAAGCAAGCAAT TCAATCCAAGATCTTCAAATTCGGCCTCATGATTGAGCCAGCCTATGCCTTCATGGAACAGCTCGTGAACATCCT TGAACTTACCAAAGACCGTCCTTCCGACGACGTCAACATTGGTGGTATGACTGCCTTGCTTAAAGTCATGTCGAC CAGGGCTCTGGAGAAGAGTGTTCGAGAAGCACAGCAGATTATGGGAGGTGCGGGCTATAACAAGGCTGGCAAAGG TGCTAGAATCGAGCAGATTAGTCGTGATGCTCGGGTTCATGTAGTCGGCGGCGGAAGTGAGGAGATTATGGCGGG ACTGGCGCTGAGGGAGGAGACAAAGGCTATTCGCACTCGGAGAAAGGCACTTGAGAAGAGACAGTCTAAAGTATG A |