Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5836.t1
Gene name
Locationscaffold_14:571910..572602
Strand-
Gene length (bp)692
Transcript length (bp)579
Coding sequence length (bp)579
Protein length (aa) 193

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.2E-08 17 63
PF13445 zf-RING_UBOX RING-type zinc-finger 1.1E-07 17 61

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5836.t1
MSQVQSSALADLEKELICTELLYQPLTLLDCLHTFCGSCVKEWFSAQGSRRSHASPRFTCPSCRTEVRDTRPNAT
VTTLLDMVLTAHPERARAADEKAEIATRYTQGESVFPALPSGGESAEDGEDDRRLLEDVRELSLRESRAQARREA
RRTGQSSRTRERSTHIERPAEDARSRRRRDEDPTRQPLCDHY*
Coding >Pro_DTO377G3_2|g5836.t1
ATGTCTCAAGTTCAAAGTTCCGCGTTGGCAGATCTTGAGAAAGAGCTGATTTGTACCGAGCTCCTCTACCAGCCC
CTCACTCTCCTCGACTGCCTCCACACCTTCTGCGGATCCTGCGTGAAAGAATGGTTCTCCGCACAAGGATCGCGT
CGCTCCCATGCCTCGCCTCGATTTACCTGCCCGTCCTGTCGCACCGAAGTGCGCGACACCCGCCCAAATGCCACC
GTCACGACCCTGCTGGACATGGTCCTGACCGCGCACCCCGAGCGTGCTAGAGCTGCAGATGAAAAGGCGGAAATT
GCTACGAGGTACACACAAGGCGAGTCGGTGTTCCCGGCACTTCCTTCGGGCGGGGAGAGCGCGGAGGATGGCGAG
GACGATAGACGCCTGCTGGAGGATGTACGCGAGCTGAGTCTACGCGAAAGCCGGGCACAAGCTAGGCGCGAGGCC
CGGCGAACGGGCCAGTCTTCGCGGACGCGCGAGAGGAGCACCCATATCGAGAGGCCTGCGGAGGACGCCCGGTCA
AGGCGGAGGAGGGATGAGGATCCAACGCGGCAGCCACTCTGCGATCATTATTGA
Transcript >Pro_DTO377G3_2|g5836.t1
ATGTCTCAAGTTCAAAGTTCCGCGTTGGCAGATCTTGAGAAAGAGCTGATTTGTACCGAGCTCCTCTACCAGCCC
CTCACTCTCCTCGACTGCCTCCACACCTTCTGCGGATCCTGCGTGAAAGAATGGTTCTCCGCACAAGGATCGCGT
CGCTCCCATGCCTCGCCTCGATTTACCTGCCCGTCCTGTCGCACCGAAGTGCGCGACACCCGCCCAAATGCCACC
GTCACGACCCTGCTGGACATGGTCCTGACCGCGCACCCCGAGCGTGCTAGAGCTGCAGATGAAAAGGCGGAAATT
GCTACGAGGTACACACAAGGCGAGTCGGTGTTCCCGGCACTTCCTTCGGGCGGGGAGAGCGCGGAGGATGGCGAG
GACGATAGACGCCTGCTGGAGGATGTACGCGAGCTGAGTCTACGCGAAAGCCGGGCACAAGCTAGGCGCGAGGCC
CGGCGAACGGGCCAGTCTTCGCGGACGCGCGAGAGGAGCACCCATATCGAGAGGCCTGCGGAGGACGCCCGGTCA
AGGCGGAGGAGGGATGAGGATCCAACGCGGCAGCCACTCTGCGATCATTATTGA
Gene >Pro_DTO377G3_2|g5836.t1
ATGTCTCAAGTTCAAAGTTCCGCGTTGGCAGATCTTGAGAAAGAGCTGGTATGCTCGGTATGTACTTGGCCATGC
CACCCCTTGCATCTCTAACACTCTGCCCCAGATTTGTACCGAGCTCCTCTACCAGCCCCTCACTCTCCTCGACTG
CCTCCACACCTTCTGCGGATCCTGCGTGAAAGAATGGTTCTCCGCACAAGGATCGCGTCGCTCCCATGCCTCGCC
TCGATTTACCTGCCCGTCCTGTCGCACCGAAGTGCGCGACACCCGCCCAAATGCCACCGTCACGACCCTGCTGGA
CATGGTCCTGACCGCGCACCCCGAGCGTGCTAGAGCTGCAGATGAAAAGGCGGAAATTGCTACGAGGTACACACA
AGGCGAGTCGGTGTTCCCGGCACTTCCTTCGGGCGGGGAGAGCGCGGAGGATGGCGAGGACGATAGACGCCTGCT
GGAGGATGTACGCGAGCTGAGTCTACGCGAAAGCCGGGCACAAGCTAGGCGCGAGGCCCGGCGAACGGGCCAGTC
TTCGCGGACGCGCGAGAGGAGCACCCATATCGAGAGGCCTGCGGAGGACGCCCGGTCAAGGCGGAGGAGGGATGA
GGATCCAACGCGGCAGCCACGTACGTTGCGGCCCGATGATTCGGACCGTGCCCGACGGGTTGAGCATCAATCTAG
TCTGCGATCATTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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