Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g5804.t1
Gene name
Location	scaffold_14:487932..490394
Strand	-
Gene length (bp)	2462
Transcript length (bp)	2214
Coding sequence length (bp)	2214
Protein length (aa)	738

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01480	PWI	PWI domain	1.5E-11	11	73
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.5E-05	370	413

GO

GO Term	Description	Terminal node
GO:0006397	mRNA processing	Yes
GO:0003723	RNA binding	Yes
GO:0008152	metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0008150	biological_process	No
GO:0006396	RNA processing	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0016071	mRNA metabolic process	No
GO:0003676	nucleic acid binding	No
GO:0044238	primary metabolic process	No
GO:0005488	binding	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0003674	molecular_function	No
GO:0006807	nitrogen compound metabolic process	No
GO:0097159	organic cyclic compound binding	No
GO:1901363	heterocyclic compound binding	No
GO:0090304	nucleic acid metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0009987	cellular process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 45	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	47.55	29.15	65.95
5d_25C	Five days - 25 degrees Celsius	49.25	30.17	68.33
7d_25C	Seven days - 25 degrees Celsius	47.39	29.01	65.77
10d_25C	Ten days - 25 degrees Celsius	48.54	29.72	67.37
7d_15C	Seven days - 15 degrees Celsius	48.12	29.47	66.78
7d_30C	Seven days - 30 degrees Celsius	49.72	30.43	69.01

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.914614	no
3d_25C	7d_25C	0.992383	no
3d_25C	7d_15C	0.973090	no
3d_25C	7d_30C	0.890027	no
3d_25C	10d_25C	0.952800	no
5d_25C	7d_25C	0.907692	no
5d_25C	7d_15C	0.946035	no
5d_25C	7d_30C	0.979204	no
5d_25C	10d_25C	0.968333	no
7d_25C	7d_15C	0.965024	no
7d_25C	7d_30C	0.881142	no
7d_25C	10d_25C	0.945067	no
7d_15C	7d_30C	0.922745	no
7d_15C	10d_25C	0.979885	no
7d_30C	10d_25C	0.945320	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g5804.t1 MQFTDAEAADVKKWVVKKLEDISDADSDVLADYVLALVRSDAPAEEIKKISVENLEDFLREHTQPFVTELFTTFG PKQPAPPTPAPAPQPQRQPQPAAQIPLSQPPENAPSGPRATVTPGSANRKRTFNEGFQGEPDHDDSGFQNRAIKT ARRGGRGGSRGDFMGGQHMQAGQQYPPQQAGQLFPLQQQGQQFPSQQQGQQFPPHQQGQQFPPQQPGGFPMMPGF PPFDPNDPMAAMMAMQSMQGMGFPPMPGMPMPGMPGPPGQPGADQIPKSNQRCPFYDTQGICYLGNTCPYQHGEG VSKDDEYDPKTAGTHAQRGGAPSRGDRGRGRGRGGFSGRGRGRSDFSSAGPNEDQSVTTIVVEQIPDDKFNEDSV REFFSEFGKITEVSLQPYKKVALVKYETFPEAKAAWSSPKVIFDNRFVKVYWYKPNRDETHDSAQPEAPAFNKEE FEKQQQEAQRAHEEKMKKRQETEAAKQALERQRDELIKKQQEERARLMQRLGGTTDTNGATGGGDAMATEPPADE NISAETKQLRAQLAALEAEAKSLGLDPAADPSARGGYRGRGGFRGRGTYRGRGAYDPNFRGGYRGRGGFAARGRG GVLRLDNRPRRVAVSGVELNSDKDEALRQHLMGVGEYESIEAHPDQPNSVVVAFKERFQAEKLMFSPWNIPSVGE VQLTWVPNPPVVLPTAGSSTEFKGGIGQDEPEDTVMSSSSVANSAPARDMDYDVAEDDSWGA*
Coding	>Pro_DTO377G3_2\|g5804.t1 ATGCAGTTTACTGATGCAGAAGCCGCTGACGTAAAGAAATGGGTGGTAAAAAAACTGGAGGACATCTCGGATGCC GACTCCGACGTGCTCGCAGACTATGTTTTGGCGCTAGTTAGGTCCGATGCGCCAGCCGAGGAAATCAAGAAGATC TCGGTGGAAAACTTGGAGGATTTCCTGCGCGAACACACTCAACCGTTCGTTACCGAGCTCTTTACAACATTCGGT CCCAAACAACCCGCACCTCCTACGCCCGCGCCTGCACCCCAGCCTCAGCGCCAGCCCCAACCTGCTGCCCAGATT CCTTTGTCACAGCCTCCTGAGAATGCCCCCAGCGGCCCGAGAGCTACCGTCACCCCGGGCAGTGCCAACCGGAAA CGAACTTTCAATGAGGGATTCCAGGGGGAGCCGGATCACGACGATAGTGGGTTCCAGAATCGCGCTATCAAGACT GCACGGCGTGGTGGGCGCGGAGGTAGTCGCGGCGACTTCATGGGCGGACAACATATGCAAGCGGGTCAACAATAT CCTCCACAACAAGCGGGTCAACTGTTTCCTCTGCAGCAACAAGGCCAGCAATTCCCCTCTCAGCAACAAGGCCAG CAATTCCCCCCGCATCAGCAGGGCCAACAGTTCCCTCCGCAGCAGCCCGGTGGCTTCCCTATGATGCCAGGTTTC CCACCGTTCGACCCCAATGACCCTATGGCAGCAATGATGGCTATGCAGAGTATGCAAGGTATGGGATTCCCGCCG ATGCCGGGGATGCCTATGCCCGGGATGCCCGGTCCTCCCGGTCAGCCAGGAGCCGATCAGATCCCGAAAAGCAAC CAGCGATGTCCATTCTATGATACCCAAGGTATCTGTTACCTAGGAAACACTTGCCCTTACCAGCACGGCGAGGGA GTCTCGAAAGACGATGAATATGACCCCAAGACCGCGGGTACGCATGCGCAGCGGGGCGGTGCTCCTTCGCGCGGT GACCGTGGCCGCGGCCGTGGTCGCGGCGGGTTCAGCGGACGAGGACGCGGCCGGTCCGATTTCTCATCGGCAGGA CCTAATGAAGATCAGTCTGTTACGACTATTGTTGTTGAGCAGATTCCCGACGACAAGTTCAACGAGGATTCTGTG CGCGAGTTCTTCTCCGAGTTCGGTAAGATCACCGAGGTTTCTTTGCAACCCTACAAAAAGGTGGCTTTGGTCAAA TACGAGACTTTCCCGGAAGCCAAGGCTGCGTGGTCTAGTCCCAAGGTTATCTTCGACAACCGCTTCGTGAAGGTT TACTGGTACAAACCGAATCGCGATGAGACGCACGACAGTGCACAACCGGAGGCCCCAGCCTTCAACAAAGAAGAG TTCGAGAAGCAACAACAAGAAGCACAGAGGGCGCACGAGGAGAAAATGAAAAAGCGACAGGAGACCGAAGCAGCC AAGCAGGCTCTAGAACGCCAGCGCGATGAACTTATCAAGAAACAGCAGGAGGAGCGGGCCCGTCTCATGCAGCGA CTTGGAGGCACGACAGACACAAACGGTGCCACCGGTGGTGGAGACGCTATGGCCACCGAGCCTCCAGCTGACGAG AATATCAGTGCTGAGACGAAACAGCTGCGAGCTCAACTGGCTGCTCTCGAGGCGGAGGCAAAGAGTCTTGGTCTC GACCCTGCGGCGGACCCTTCAGCGCGGGGTGGCTACCGGGGTCGTGGTGGCTTCCGCGGCCGAGGCACGTACCGT GGACGCGGCGCTTACGATCCCAACTTCCGCGGAGGATATCGTGGACGCGGTGGATTTGCGGCTCGGGGACGGGGA GGTGTACTGCGTCTGGATAACCGGCCTCGACGAGTCGCCGTATCGGGCGTTGAGCTCAACTCAGACAAGGACGAG GCATTGCGTCAGCACCTGATGGGCGTTGGCGAATACGAATCCATCGAGGCACACCCAGACCAGCCAAACTCGGTC GTGGTGGCATTCAAAGAGCGCTTCCAGGCCGAGAAGCTAATGTTCTCCCCGTGGAACATCCCCTCCGTGGGCGAG GTTCAACTCACCTGGGTGCCCAATCCGCCCGTTGTACTTCCTACCGCTGGGTCATCCACGGAATTCAAGGGTGGT ATTGGACAGGACGAACCGGAAGACACAGTCATGTCGTCTTCGTCGGTGGCCAACAGCGCTCCTGCGCGGGATATG GATTACGACGTTGCGGAGGATGACAGCTGGGGCGCTTAA
Transcript	>Pro_DTO377G3_2\|g5804.t1 ATGCAGTTTACTGATGCAGAAGCCGCTGACGTAAAGAAATGGGTGGTAAAAAAACTGGAGGACATCTCGGATGCC GACTCCGACGTGCTCGCAGACTATGTTTTGGCGCTAGTTAGGTCCGATGCGCCAGCCGAGGAAATCAAGAAGATC TCGGTGGAAAACTTGGAGGATTTCCTGCGCGAACACACTCAACCGTTCGTTACCGAGCTCTTTACAACATTCGGT CCCAAACAACCCGCACCTCCTACGCCCGCGCCTGCACCCCAGCCTCAGCGCCAGCCCCAACCTGCTGCCCAGATT CCTTTGTCACAGCCTCCTGAGAATGCCCCCAGCGGCCCGAGAGCTACCGTCACCCCGGGCAGTGCCAACCGGAAA CGAACTTTCAATGAGGGATTCCAGGGGGAGCCGGATCACGACGATAGTGGGTTCCAGAATCGCGCTATCAAGACT GCACGGCGTGGTGGGCGCGGAGGTAGTCGCGGCGACTTCATGGGCGGACAACATATGCAAGCGGGTCAACAATAT CCTCCACAACAAGCGGGTCAACTGTTTCCTCTGCAGCAACAAGGCCAGCAATTCCCCTCTCAGCAACAAGGCCAG CAATTCCCCCCGCATCAGCAGGGCCAACAGTTCCCTCCGCAGCAGCCCGGTGGCTTCCCTATGATGCCAGGTTTC CCACCGTTCGACCCCAATGACCCTATGGCAGCAATGATGGCTATGCAGAGTATGCAAGGTATGGGATTCCCGCCG ATGCCGGGGATGCCTATGCCCGGGATGCCCGGTCCTCCCGGTCAGCCAGGAGCCGATCAGATCCCGAAAAGCAAC CAGCGATGTCCATTCTATGATACCCAAGGTATCTGTTACCTAGGAAACACTTGCCCTTACCAGCACGGCGAGGGA GTCTCGAAAGACGATGAATATGACCCCAAGACCGCGGGTACGCATGCGCAGCGGGGCGGTGCTCCTTCGCGCGGT GACCGTGGCCGCGGCCGTGGTCGCGGCGGGTTCAGCGGACGAGGACGCGGCCGGTCCGATTTCTCATCGGCAGGA CCTAATGAAGATCAGTCTGTTACGACTATTGTTGTTGAGCAGATTCCCGACGACAAGTTCAACGAGGATTCTGTG CGCGAGTTCTTCTCCGAGTTCGGTAAGATCACCGAGGTTTCTTTGCAACCCTACAAAAAGGTGGCTTTGGTCAAA TACGAGACTTTCCCGGAAGCCAAGGCTGCGTGGTCTAGTCCCAAGGTTATCTTCGACAACCGCTTCGTGAAGGTT TACTGGTACAAACCGAATCGCGATGAGACGCACGACAGTGCACAACCGGAGGCCCCAGCCTTCAACAAAGAAGAG TTCGAGAAGCAACAACAAGAAGCACAGAGGGCGCACGAGGAGAAAATGAAAAAGCGACAGGAGACCGAAGCAGCC AAGCAGGCTCTAGAACGCCAGCGCGATGAACTTATCAAGAAACAGCAGGAGGAGCGGGCCCGTCTCATGCAGCGA CTTGGAGGCACGACAGACACAAACGGTGCCACCGGTGGTGGAGACGCTATGGCCACCGAGCCTCCAGCTGACGAG AATATCAGTGCTGAGACGAAACAGCTGCGAGCTCAACTGGCTGCTCTCGAGGCGGAGGCAAAGAGTCTTGGTCTC GACCCTGCGGCGGACCCTTCAGCGCGGGGTGGCTACCGGGGTCGTGGTGGCTTCCGCGGCCGAGGCACGTACCGT GGACGCGGCGCTTACGATCCCAACTTCCGCGGAGGATATCGTGGACGCGGTGGATTTGCGGCTCGGGGACGGGGA GGTGTACTGCGTCTGGATAACCGGCCTCGACGAGTCGCCGTATCGGGCGTTGAGCTCAACTCAGACAAGGACGAG GCATTGCGTCAGCACCTGATGGGCGTTGGCGAATACGAATCCATCGAGGCACACCCAGACCAGCCAAACTCGGTC GTGGTGGCATTCAAAGAGCGCTTCCAGGCCGAGAAGCTAATGTTCTCCCCGTGGAACATCCCCTCCGTGGGCGAG GTTCAACTCACCTGGGTGCCCAATCCGCCCGTTGTACTTCCTACCGCTGGGTCATCCACGGAATTCAAGGGTGGT ATTGGACAGGACGAACCGGAAGACACAGTCATGTCGTCTTCGTCGGTGGCCAACAGCGCTCCTGCGCGGGATATG GATTACGACGTTGCGGAGGATGACAGCTGGGGCGCTTAA
Gene	>Pro_DTO377G3_2\|g5804.t1 ATGCAGTTTACTGATGCAGAAGCCGCTGACGTAAAGAAATGGGTGGTAAAAAAACTGGAGGACATGTGAGTTGAT CAGGCACCAGAATCGGGGACTGAGACCCGTGGATTGCCCTAGGGGAAGCAAACTGAGACTAATTGGCTTTATTCT GTCTTTAGCTCGGATGCCGACTCCGACGTGCTCGCAGACTATGTTTTGGCGCTAGTTAGGTCCGATGCGCCAGCC GAGGAAATCAAGAAGATCTCGGTGGAAAACTTGGAGGATTTCCTGCGCGAACGTGAGTCCATATCTCAATCCCGA ATTGTTTCATACAACTAACAACTCTTAGACACTCAACCGTTCGTTACCGAGCTCTTTACAACATTCGGTCCCAAA CAACCCGCACCTCCTACGCCCGCGCCTGCACCCCAGCCTCAGCGCCAGCCCCAACCTGCTGCCCAGATTCCTTTG TCACAGCCTCCTGAGAATGCCCCCAGCGGCCCGAGAGCTACCGTCACCCCGGGCAGTGCCAACCGGAAACGAACT TTCAATGAGGGATTCCAGGGGGAGCCGGATCACGACGATAGTGGGTTCCAGAATCGCGCTATCAAGACTGCACGG CGTGGTGGGCGCGGAGGTAGTCGCGGCGACTTCATGGGCGGACAACATATGCAAGCGGGTCAACAATATCCTCCA CAACAAGCGGGTCAACTGTTTCCTCTGCAGCAACAAGGCCAGCAATTCCCCTCTCAGCAACAAGGCCAGCAATTC CCCCCGCATCAGCAGGGCCAACAGTTCCCTCCGCAGCAGCCCGGTGGCTTCCCTATGATGCCAGGTTTCCCACCG TTCGACCCCAATGACCCTATGGCAGCAATGATGGCTATGCAGAGTATGCAAGGTATGGGATTCCCGCCGATGCCG GGGATGCCTATGCCCGGGATGCCCGGTCCTCCCGGTCAGCCAGGAGCCGATCAGATCCCGAAAAGCAACCAGCGA TGTCCATTCTATGATACCCAAGGTATCTGTTACCTAGGAAACACTTGCCCTTACCAGCACGGCGAGGGAGTCTCG AAAGACGATGGTAAGAACAATTCATTTATCCTAGATATACCATTGCTAACAATCGCAGAATATGACCCCAAGACC GCGGGTACGCATGCGCAGCGGGGCGGTGCTCCTTCGCGCGGTGACCGTGGCCGCGGCCGTGGTCGCGGCGGGTTC AGCGGACGAGGACGCGGCCGGTCCGATTTCTCATCGGCAGGACCTAATGAAGATCAGTCTGTTACGACTATTGTT GTTGAGCAGATTCCCGACGACAAGTTCAACGAGGATTCTGTGCGCGAGTTCTTCTCCGAGTTCGGTAAGATCACC GAGGTTTCTTTGCAACCCTACAAAAAGGTGGCTTTGGTCAAATACGAGACTTTCCCGGAAGCCAAGGCTGCGTGG TCTAGTCCCAAGGTTATCTTCGACAACCGCTTCGTGAAGGTTTACTGGTACAAACCGAATCGCGATGAGACGCAC GACAGTGCACAACCGGAGGCCCCAGCCTTCAACAAAGAAGAGTTCGAGAAGCAACAACAAGAAGCACAGAGGGCG CACGAGGAGAAAATGAAAAAGCGACAGGAGACCGAAGCAGCCAAGCAGGCTCTAGAACGCCAGCGCGATGAACTT ATCAAGAAACAGCAGGAGGAGCGGGCCCGTCTCATGCAGCGACTTGGAGGCACGACAGACACAAACGGTGCCACC GGTGGTGGAGACGCTATGGCCACCGAGCCTCCAGCTGACGAGAATATCAGTGCTGAGACGAAACAGCTGCGAGCT CAACTGGCTGCTCTCGAGGCGGAGGCAAAGAGTCTTGGTCTCGACCCTGCGGCGGACCCTTCAGCGCGGGGTGGC TACCGGGGTCGTGGTGGCTTCCGCGGCCGAGGCACGTACCGTGGACGCGGCGCTTACGATCCCAACTTCCGCGGA GGATATCGTGGACGCGGTGGATTTGCGGCTCGGGGACGGGGAGGTGTACTGCGTCTGGATAACCGGCCTCGACGA GTCGCCGTATCGGGCGTTGAGCTCAACTCAGACAAGGACGAGGCATTGCGTCAGCACCTGATGGTAAGTTATGTA TCTTTCTAACCAAGCAAAGCGTGTACTAATTTGTTGTGTTCTAGGGCGTTGGCGAATACGAATCCATCGAGGCAC ACCCAGACCAGCCAAACTCGGTCGTGGTGGCATTCAAAGAGCGCTTCCAGGCCGAGAAGCTAATGTTCTCCCCGT GGAACATCCCCTCCGTGGGCGAGGTTCAACTCACCTGGGTGCCCAATCCGCCCGTTGTACTTCCTACCGCTGGGT CATCCACGGAATTCAAGGGTGGTATTGGACAGGACGAACCGGAAGACACAGTCATGTCGTCTTCGTCGGTGGCCA ACAGCGCTCCTGCGCGGGATATGGATTACGACGTTGCGGAGGATGACAGCTGGGGCGCTTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences