Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5798.t1
Gene name
Locationscaffold_14:477103..477574
Strand+
Gene length (bp)471
Transcript length (bp)360
Coding sequence length (bp)360
Protein length (aa) 120

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.5

Transmembrane Domains

Domain # Start End Length
1 22 41 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 1.78 0.0 4.54
5d_25C Five days - 25 degrees Celsius 1.63 0.0 4.16
7d_25C Seven days - 25 degrees Celsius 1.81 0.0 4.42
10d_25C Ten days - 25 degrees Celsius 0.90 0.0 2.19
7d_15C Seven days - 15 degrees Celsius 2.47 0.0 5.17
7d_30C Seven days - 30 degrees Celsius 0.91 0.0 2.15

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.946934 no
3d_25C 7d_25C 0.977831 no
3d_25C 7d_15C 0.780963 no
3d_25C 7d_30C 0.592448 no
3d_25C 10d_25C 0.595960 no
5d_25C 7d_25C 0.934727 no
5d_25C 7d_15C 0.719023 no
5d_25C 7d_30C 0.637903 no
5d_25C 10d_25C 0.643890 no
7d_25C 7d_15C 0.803801 no
7d_25C 7d_30C 0.599075 no
7d_25C 10d_25C 0.543637 no
7d_15C 7d_30C 0.407139 no
7d_15C 10d_25C 0.416842 no
7d_30C 10d_25C 1.000000 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5798.t1
MLSPRAEKYEVDTGKEVILTKLLLGLIVVAFGVFMGCTIWVKLKPRYEAEWKPKLKPKLQDCREKYEGWKEKMGA
WHGPNEPKAPAPAHVARHISQTPDIDRITCDLTPKYLRKSTAIV*
Coding >Pro_DTO377G3_2|g5798.t1
ATGCTCTCTCCTCGGGCTGAAAAATACGAGGTTGACACGGGGAAGGAAGTCATCCTCACCAAGCTTCTCCTGGGG
CTCATCGTGGTCGCCTTCGGTGTGTTCATGGGGTGCACAATCTGGGTTAAGTTGAAGCCCAGGTATGAGGCGGAG
TGGAAGCCGAAGCTTAAGCCCAAGCTTCAGGACTGCAGGGAGAAGTATGAGGGCTGGAAGGAGAAGATGGGGGCC
TGGCATGGCCCCAACGAACCAAAGGCGCCAGCGCCTGCTCATGTGGCTCGCCACATTTCTCAGACTCCGGATATC
GACCGGATCACTTGTGATCTGACTCCGAAGTACCTGAGAAAGTCGACGGCCATCGTCTAG
Transcript >Pro_DTO377G3_2|g5798.t1
ATGCTCTCTCCTCGGGCTGAAAAATACGAGGTTGACACGGGGAAGGAAGTCATCCTCACCAAGCTTCTCCTGGGG
CTCATCGTGGTCGCCTTCGGTGTGTTCATGGGGTGCACAATCTGGGTTAAGTTGAAGCCCAGGTATGAGGCGGAG
TGGAAGCCGAAGCTTAAGCCCAAGCTTCAGGACTGCAGGGAGAAGTATGAGGGCTGGAAGGAGAAGATGGGGGCC
TGGCATGGCCCCAACGAACCAAAGGCGCCAGCGCCTGCTCATGTGGCTCGCCACATTTCTCAGACTCCGGATATC
GACCGGATCACTTGTGATCTGACTCCGAAGTACCTGAGAAAGTCGACGGCCATCGTCTAG
Gene >Pro_DTO377G3_2|g5798.t1
ATGCTCTCTCCTCGGGCTGAAAAATACGAGGTTGACACGGGGAAGGAAGTCATCCTCACCAAGCTTCTCCTGGGG
CTCATCGTGGTCGCCTTCGGTGTGTTCATGGGGTGCACAATGTAAGTACACCATCAGTCCAATGGATCCAAAAAG
AAATACTCATAGCTCTATTAGCTGGGTTAAGTTGAAGCCCAGGTATGAGGCGGAGTGGAAGCCGAAGCTTAAGCC
CAAGCTTCAGGACTGCAGGGAGAAGTATGAGGGCTGGAAGGAGAAGATGGGGGCCTGGCATGGCCCCAACGAACC
AAGTAAGTTGATCCCATCAACAAAATGTACTTGTTCTTGATGCTAATGTTCCTTACAGAGGCGCCAGCGCCTGCT
CATGTGGCTCGCCACATTTCTCAGACTCCGGATATCGACCGGATCACTTGTGATCTGACTCCGAAGTACCTGAGA
AAGTCGACGGCCATCGTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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