© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g5781.t1 |
| Gene name | |
| Location | scaffold_14:432592..433351 |
| Strand | - |
| Gene length (bp) | 759 |
| Transcript length (bp) | 759 |
| Coding sequence length (bp) | 759 |
| Protein length (aa) | 253 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 3.3E-37 | 9 | 208 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 2.8E-24 | 13 | 213 |
| PF08659 | KR | KR domain | 1.8E-10 | 9 | 127 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.21 | 1.09 | 9.34 |
| 5d_25C | Five days - 25 degrees Celsius | 6.24 | 1.31 | 11.17 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.12 | 1.61 | 12.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.27 | 1.06 | 9.49 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.82 | 3.26 | 20.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.24 | 2.12 | 14.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.764459 | no |
| 3d_25C | 7d_25C | 0.561040 | no |
| 3d_25C | 7d_15C | 0.046955 | yes |
| 3d_25C | 7d_30C | 0.319022 | no |
| 3d_25C | 10d_25C | 0.987161 | no |
| 5d_25C | 7d_25C | 0.831762 | no |
| 5d_25C | 7d_15C | 0.136062 | no |
| 5d_25C | 7d_30C | 0.586072 | no |
| 5d_25C | 10d_25C | 0.774596 | no |
| 7d_25C | 7d_15C | 0.252630 | no |
| 7d_25C | 7d_30C | 0.806450 | no |
| 7d_25C | 10d_25C | 0.573712 | no |
| 7d_15C | 7d_30C | 0.421182 | no |
| 7d_15C | 10d_25C | 0.048822 | yes |
| 7d_30C | 10d_25C | 0.328123 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5781.t1 MAAVTKPLVLITGANQGLGFATAQQLASTGQYNLLVAARSQEKAEGAVKQLESSTNSSLTPIVIDLDQDESITAA AKFVEERFGSLDILINNAGINRSSDPNATLRESYRAVFETNVFGVAVMTATFLPLLRASKYHDRRIVNVTSGLGQ IGIAYSPTSEYSAKIWELPIYRSSKSAINMISAVDAVSLEKENILVILAAPGFCRTNFGGGQGVKSAEEGARPIV RAATEGSPKELFGKLVDDENTLVEFGW* |
| Coding | >Pro_DTO377G3_2|g5781.t1 ATGGCCGCCGTCACTAAACCCTTGGTTCTGATCACCGGTGCAAACCAGGGCCTGGGATTCGCGACAGCACAACAG CTTGCTAGCACTGGCCAATATAATCTTCTTGTTGCCGCCCGCTCCCAGGAAAAAGCCGAAGGCGCAGTCAAGCAA CTGGAGTCTAGCACCAATAGCTCTTTGACGCCTATTGTTATCGATCTTGACCAAGACGAATCTATCACTGCGGCA GCCAAGTTCGTTGAAGAGCGTTTCGGATCGCTGGATATCCTCATCAACAACGCTGGTATCAATAGATCGTCCGAC CCAAATGCTACTCTGCGCGAGAGCTACCGAGCTGTGTTTGAAACAAATGTTTTCGGTGTGGCGGTGATGACAGCA ACTTTCCTACCACTCCTACGCGCATCGAAGTACCATGACCGACGTATTGTCAATGTGACAAGCGGCCTTGGTCAA ATTGGCATCGCGTACTCGCCAACTTCAGAATACAGTGCTAAGATATGGGAACTGCCTATCTACCGCAGTAGCAAG TCTGCGATCAATATGATTAGTGCTGTCGATGCTGTCAGTCTCGAGAAAGAGAACATTCTCGTTATTCTAGCTGCC CCAGGCTTCTGTCGTACCAACTTTGGAGGTGGTCAGGGCGTCAAATCAGCAGAGGAGGGGGCTCGGCCTATTGTA CGGGCTGCTACAGAGGGTTCGCCAAAAGAACTATTTGGAAAGCTTGTGGACGACGAGAACACGCTGGTCGAGTTC GGCTGGTAG |
| Transcript | >Pro_DTO377G3_2|g5781.t1 ATGGCCGCCGTCACTAAACCCTTGGTTCTGATCACCGGTGCAAACCAGGGCCTGGGATTCGCGACAGCACAACAG CTTGCTAGCACTGGCCAATATAATCTTCTTGTTGCCGCCCGCTCCCAGGAAAAAGCCGAAGGCGCAGTCAAGCAA CTGGAGTCTAGCACCAATAGCTCTTTGACGCCTATTGTTATCGATCTTGACCAAGACGAATCTATCACTGCGGCA GCCAAGTTCGTTGAAGAGCGTTTCGGATCGCTGGATATCCTCATCAACAACGCTGGTATCAATAGATCGTCCGAC CCAAATGCTACTCTGCGCGAGAGCTACCGAGCTGTGTTTGAAACAAATGTTTTCGGTGTGGCGGTGATGACAGCA ACTTTCCTACCACTCCTACGCGCATCGAAGTACCATGACCGACGTATTGTCAATGTGACAAGCGGCCTTGGTCAA ATTGGCATCGCGTACTCGCCAACTTCAGAATACAGTGCTAAGATATGGGAACTGCCTATCTACCGCAGTAGCAAG TCTGCGATCAATATGATTAGTGCTGTCGATGCTGTCAGTCTCGAGAAAGAGAACATTCTCGTTATTCTAGCTGCC CCAGGCTTCTGTCGTACCAACTTTGGAGGTGGTCAGGGCGTCAAATCAGCAGAGGAGGGGGCTCGGCCTATTGTA CGGGCTGCTACAGAGGGTTCGCCAAAAGAACTATTTGGAAAGCTTGTGGACGACGAGAACACGCTGGTCGAGTTC GGCTGGTAG |
| Gene | >Pro_DTO377G3_2|g5781.t1 ATGGCCGCCGTCACTAAACCCTTGGTTCTGATCACCGGTGCAAACCAGGGCCTGGGATTCGCGACAGCACAACAG CTTGCTAGCACTGGCCAATATAATCTTCTTGTTGCCGCCCGCTCCCAGGAAAAAGCCGAAGGCGCAGTCAAGCAA CTGGAGTCTAGCACCAATAGCTCTTTGACGCCTATTGTTATCGATCTTGACCAAGACGAATCTATCACTGCGGCA GCCAAGTTCGTTGAAGAGCGTTTCGGATCGCTGGATATCCTCATCAACAACGCTGGTATCAATAGATCGTCCGAC CCAAATGCTACTCTGCGCGAGAGCTACCGAGCTGTGTTTGAAACAAATGTTTTCGGTGTGGCGGTGATGACAGCA ACTTTCCTACCACTCCTACGCGCATCGAAGTACCATGACCGACGTATTGTCAATGTGACAAGCGGCCTTGGTCAA ATTGGCATCGCGTACTCGCCAACTTCAGAATACAGTGCTAAGATATGGGAACTGCCTATCTACCGCAGTAGCAAG TCTGCGATCAATATGATTAGTGCTGTCGATGCTGTCAGTCTCGAGAAAGAGAACATTCTCGTTATTCTAGCTGCC CCAGGCTTCTGTCGTACCAACTTTGGAGGTGGTCAGGGCGTCAAATCAGCAGAGGAGGGGGCTCGGCCTATTGTA CGGGCTGCTACAGAGGGTTCGCCAAAAGAACTATTTGGAAAGCTTGTGGACGACGAGAACACGCTGGTCGAGTTC GGCTGGTAG |