© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g5759.t1 |
| Gene name | |
| Location | scaffold_14:354585..356368 |
| Strand | - |
| Gene length (bp) | 1783 |
| Transcript length (bp) | 1575 |
| Coding sequence length (bp) | 1575 |
| Protein length (aa) | 525 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06813 | Nodulin-like | Nodulin-like | 2.9E-23 | 13 | 198 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.8E-14 | 21 | 433 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 72 | 94 | 22 |
| 3 | 106 | 128 | 22 |
| 4 | 143 | 165 | 22 |
| 5 | 172 | 194 | 22 |
| 6 | 301 | 323 | 22 |
| 7 | 380 | 402 | 22 |
| 8 | 406 | 428 | 22 |
| 9 | 441 | 463 | 22 |
| 10 | 488 | 507 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 86.13 | 52.87 | 119.40 |
| 5d_25C | Five days - 25 degrees Celsius | 80.49 | 49.36 | 111.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 69.86 | 42.45 | 97.26 |
| 10d_25C | Ten days - 25 degrees Celsius | 57.69 | 34.84 | 80.54 |
| 7d_15C | Seven days - 15 degrees Celsius | 135.00 | 81.29 | 188.72 |
| 7d_30C | Seven days - 30 degrees Celsius | 38.45 | 22.36 | 54.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.823951 | no |
| 3d_25C | 7d_25C | 0.395031 | no |
| 3d_25C | 7d_15C | 0.027737 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.055151 | no |
| 5d_25C | 7d_25C | 0.596201 | no |
| 5d_25C | 7d_15C | 0.009770 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.124424 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.004840 | yes |
| 7d_25C | 10d_25C | 0.443940 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.067601 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5759.t1 MSGSLHRTARIISVIAGTLVALSCGTNYAYSAWAPQFAQRMKLSSTESNFIGVAGNLGMYAMGIPMGLLTDARGP RLVALIGSVGLGLGYFPIYMAYDNGQGSMPVVFLCLFAFLTGMGGCSAFGGAIKTAASNFPDHRGTATAFPMAAF GLSALFWSNLSTLIFKDDTGRFLLLLALGTSILSFASIPFLRILPSEPYSSIPHGGHESSDLDTVLEDSDLHGST AFDHEQYPVHARSHSVASNSQGRAFSHADETANLVSKHDRPRPSFDTLDDDFLDEVAIEAHQTDIRGLAMLRKVE FWQLFLTMALLSGIGLMTINNIGNSVKALWLYYDDSATDLFIQHRQVMHVSILSFGNFLGRLFSGIGSDLLVKKL GMSRIWCLFLSAVVFTLTQLAGTTISNPNSLVVVSAFTGIAYGFLFGVFPSLTAHTFGIGGLSQNWGVMTLAPVF SGNVFNLLYGNIYDAHSVVGHDGDRECPDGLGCYRSAYFMTFVSGLFGIAVCLWTIIRERNIDNIMNKKMDRLA* |
| Coding | >Pro_DTO377G3_2|g5759.t1 ATGTCCGGCTCTCTACACCGAACTGCCCGGATTATTTCTGTCATTGCGGGGACGCTGGTCGCCCTCTCATGCGGA ACCAATTATGCATACTCCGCGTGGGCGCCGCAATTCGCGCAGCGGATGAAGCTCTCATCCACCGAGAGCAACTTT ATTGGTGTCGCGGGAAACCTGGGGATGTATGCTATGGGAATTCCAATGGGATTATTGACAGATGCCCGCGGTCCC CGACTTGTCGCCCTGATCGGCTCTGTTGGCCTAGGCCTGGGTTACTTCCCAATTTATATGGCATATGATAATGGC CAAGGATCGATGCCGGTTGTGTTCCTATGCCTTTTCGCTTTCCTTACTGGCATGGGCGGTTGCTCTGCCTTTGGC GGTGCCATCAAAACAGCGGCATCGAACTTCCCCGACCACCGCGGCACGGCAACCGCTTTCCCGATGGCCGCCTTC GGACTAAGCGCGCTATTCTGGTCCAACCTGTCGACTCTCATTTTCAAGGACGATACCGGCCGCTTCCTTCTGCTT CTAGCCCTCGGAACCTCGATTCTGTCCTTTGCCTCAATCCCATTCCTTCGAATCCTCCCCAGCGAGCCGTACTCA TCCATCCCACATGGCGGACACGAGTCTAGCGACCTTGATACCGTGCTAGAGGACTCCGATCTACATGGCTCTACC GCTTTTGATCATGAACAATACCCCGTGCATGCGCGGTCGCACTCTGTTGCATCGAACTCCCAAGGCAGGGCATTC AGCCATGCCGATGAGACTGCCAACTTGGTATCCAAGCACGACCGCCCGCGTCCCTCTTTCGATACACTTGACGAT GACTTCTTGGATGAAGTGGCCATTGAGGCGCACCAAACTGATATCCGAGGTCTCGCCATGCTCCGCAAAGTCGAG TTCTGGCAGCTCTTCTTGACCATGGCACTCTTGTCCGGTATCGGCTTGATGACCATCAACAACATCGGCAATAGC GTGAAGGCCCTGTGGCTGTACTACGACGACAGCGCAACAGACCTGTTCATCCAACACCGCCAGGTCATGCACGTC TCAATTCTCTCCTTCGGCAATTTCCTCGGCCGTCTGTTTAGCGGCATCGGCTCTGACCTACTAGTCAAGAAGCTC GGCATGTCCCGCATCTGGTGTTTATTCTTGTCAGCGGTAGTCTTTACCCTGACCCAGCTCGCCGGCACCACCATT TCCAACCCGAACAGCCTCGTCGTTGTCTCCGCCTTCACTGGAATCGCTTACGGGTTCTTGTTTGGCGTCTTCCCT TCCCTAACCGCACACACTTTCGGCATTGGTGGCCTGTCCCAGAATTGGGGCGTCATGACACTAGCCCCAGTGTTC AGTGGTAATGTCTTCAATTTGTTGTACGGTAATATCTACGACGCGCACTCTGTTGTCGGCCACGATGGCGACCGC GAGTGTCCCGATGGATTGGGCTGCTACCGCTCAGCCTATTTCATGACTTTCGTTTCCGGCTTATTTGGTATCGCT GTTTGTCTGTGGACCATCATCCGGGAGAGGAACATTGATAACATCATGAATAAGAAGATGGACCGACTCGCCTGA |
| Transcript | >Pro_DTO377G3_2|g5759.t1 ATGTCCGGCTCTCTACACCGAACTGCCCGGATTATTTCTGTCATTGCGGGGACGCTGGTCGCCCTCTCATGCGGA ACCAATTATGCATACTCCGCGTGGGCGCCGCAATTCGCGCAGCGGATGAAGCTCTCATCCACCGAGAGCAACTTT ATTGGTGTCGCGGGAAACCTGGGGATGTATGCTATGGGAATTCCAATGGGATTATTGACAGATGCCCGCGGTCCC CGACTTGTCGCCCTGATCGGCTCTGTTGGCCTAGGCCTGGGTTACTTCCCAATTTATATGGCATATGATAATGGC CAAGGATCGATGCCGGTTGTGTTCCTATGCCTTTTCGCTTTCCTTACTGGCATGGGCGGTTGCTCTGCCTTTGGC GGTGCCATCAAAACAGCGGCATCGAACTTCCCCGACCACCGCGGCACGGCAACCGCTTTCCCGATGGCCGCCTTC GGACTAAGCGCGCTATTCTGGTCCAACCTGTCGACTCTCATTTTCAAGGACGATACCGGCCGCTTCCTTCTGCTT CTAGCCCTCGGAACCTCGATTCTGTCCTTTGCCTCAATCCCATTCCTTCGAATCCTCCCCAGCGAGCCGTACTCA TCCATCCCACATGGCGGACACGAGTCTAGCGACCTTGATACCGTGCTAGAGGACTCCGATCTACATGGCTCTACC GCTTTTGATCATGAACAATACCCCGTGCATGCGCGGTCGCACTCTGTTGCATCGAACTCCCAAGGCAGGGCATTC AGCCATGCCGATGAGACTGCCAACTTGGTATCCAAGCACGACCGCCCGCGTCCCTCTTTCGATACACTTGACGAT GACTTCTTGGATGAAGTGGCCATTGAGGCGCACCAAACTGATATCCGAGGTCTCGCCATGCTCCGCAAAGTCGAG TTCTGGCAGCTCTTCTTGACCATGGCACTCTTGTCCGGTATCGGCTTGATGACCATCAACAACATCGGCAATAGC GTGAAGGCCCTGTGGCTGTACTACGACGACAGCGCAACAGACCTGTTCATCCAACACCGCCAGGTCATGCACGTC TCAATTCTCTCCTTCGGCAATTTCCTCGGCCGTCTGTTTAGCGGCATCGGCTCTGACCTACTAGTCAAGAAGCTC GGCATGTCCCGCATCTGGTGTTTATTCTTGTCAGCGGTAGTCTTTACCCTGACCCAGCTCGCCGGCACCACCATT TCCAACCCGAACAGCCTCGTCGTTGTCTCCGCCTTCACTGGAATCGCTTACGGGTTCTTGTTTGGCGTCTTCCCT TCCCTAACCGCACACACTTTCGGCATTGGTGGCCTGTCCCAGAATTGGGGCGTCATGACACTAGCCCCAGTGTTC AGTGGTAATGTCTTCAATTTGTTGTACGGTAATATCTACGACGCGCACTCTGTTGTCGGCCACGATGGCGACCGC GAGTGTCCCGATGGATTGGGCTGCTACCGCTCAGCCTATTTCATGACTTTCGTTTCCGGCTTATTTGGTATCGCT GTTTGTCTGTGGACCATCATCCGGGAGAGGAACATTGATAACATCATGAATAAGAAGATGGACCGACTCGCCTGA |
| Gene | >Pro_DTO377G3_2|g5759.t1 ATGTCCGGCTCTCTACACCGAACTGCCCGGATTATTTCTGTCATTGCGGGGACGCTGGTCGCCCTCTCATGCGGA ACCAATGTGCGTGATATCTCCGGTCTCATCCCCATTCAGGACCATTAAGGTTAACCCATCTTAGTATGCATACTC CGCGTGGGCGCCGCAATTCGCGCAGCGGATGAAGCTCTCATCCACCGAGAGCAACTTTATTGTGAGTAATGCCAT GTCCGGTGTCGGGAAACGGGTTTTAACAGTGTCTAGGGTGTCGCGGGAAACCTGGGGATGTATGCTATGGGAATT CCAATGGGATTATTGACAGATGCCCGCGGTCCCCGACTTGTCGCCCTGATCGGCTCTGTTGGCCTAGGCCTGGGT TACTTCCCAATTTATATGGGTATGTGTTGAGGTTACCTTGTCGGAATTGAGCAGCTCTAATGTCTGTAGCATATG ATAATGGCCAAGGATCGATGCCGGTTGTGTTCCTATGCCTTTTCGCTTTCCTTACTGGCATGGGCGGTTGCTCTG CCTTTGGCGGTGCCATCAAAACAGGTATGTTACACTAAGTAATTTGCTTAATAGAGTTAACCTAATGATTCCAGC GGCATCGAACTTCCCCGACCACCGCGGCACGGCAACCGCTTTCCCGATGGCCGCCTTCGGACTAAGCGCGCTATT CTGGTCCAACCTGTCGACTCTCATTTTCAAGGACGATACCGGCCGCTTCCTTCTGCTTCTAGCCCTCGGAACCTC GATTCTGTCCTTTGCCTCAATCCCATTCCTTCGAATCCTCCCCAGCGAGCCGTACTCATCCATCCCACATGGCGG ACACGAGTCTAGCGACCTTGATACCGTGCTAGAGGACTCCGATCTACATGGCTCTACCGCTTTTGATCATGAACA ATACCCCGTGCATGCGCGGTCGCACTCTGTTGCATCGAACTCCCAAGGCAGGGCATTCAGCCATGCCGATGAGAC TGCCAACTTGGTATCCAAGCACGACCGCCCGCGTCCCTCTTTCGATACACTTGACGATGACTTCTTGGATGAAGT GGCCATTGAGGCGCACCAAACTGATATCCGAGGTCTCGCCATGCTCCGCAAAGTCGAGTTCTGGCAGCTCTTCTT GACCATGGCACTCTTGTCCGGTATCGGCTTGATGACCATCAACAACATCGGCAATAGCGTGAAGGCCCTGTGGCT GTACTACGACGACAGCGCAACAGACCTGTTCATCCAACACCGCCAGGTCATGCACGTCTCAATTCTCTCCTTCGG CAATTTCCTCGGCCGTCTGTTTAGCGGCATCGGCTCTGACCTACTAGTCAAGAAGCTCGGCATGTCCCGCATCTG GTGTTTATTCTTGTCAGCGGTAGTCTTTACCCTGACCCAGCTCGCCGGCACCACCATTTCCAACCCGAACAGCCT CGTCGTTGTCTCCGCCTTCACTGGAATCGCTTACGGGTTCTTGTTTGGCGTCTTCCCTTCCCTAACCGCACACAC TTTCGGCATTGGTGGCCTGTCCCAGAATTGGGGCGTCATGACACTAGCCCCAGTGTTCAGTGGTAATGTCTTCAA TTTGTTGTACGGTAATATCTACGACGCGCACTCTGTTGTCGGCCACGATGGCGACCGCGAGTGTCCCGATGGATT GGGCTGCTACCGCTCAGCCTATTTCATGACTTTCGTTTCCGGCTTATTTGGTATCGCTGTTTGTCTGTGGACCAT CATCCGGGAGAGGAACATTGATAACATCATGAATAAGAAGATGGACCGACTCGCCTGA |