© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5752.t1 |
| Gene name | |
| Location | scaffold_14:335533..336217 |
| Strand | - |
| Gene length (bp) | 684 |
| Transcript length (bp) | 459 |
| Coding sequence length (bp) | 459 |
| Protein length (aa) | 153 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14853 | Fis1_TPR_C | Fis1 C-terminal tetratricopeptide repeat | 5.0E-25 | 73 | 125 |
| PF14852 | Fis1_TPR_N | Fis1 N-terminal tetratricopeptide repeat | 4.3E-16 | 36 | 66 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 124 | 146 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 241.28 | 142.48 | 340.09 |
| 5d_25C | Five days - 25 degrees Celsius | 404.38 | 246.45 | 562.31 |
| 7d_25C | Seven days - 25 degrees Celsius | 445.80 | 272.31 | 619.28 |
| 10d_25C | Ten days - 25 degrees Celsius | 673.07 | 410.93 | 935.20 |
| 7d_15C | Seven days - 15 degrees Celsius | 344.71 | 207.51 | 481.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 408.60 | 245.83 | 571.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.013211 | yes |
| 3d_25C | 7d_25C | 0.002761 | yes |
| 3d_25C | 7d_15C | 0.118029 | no |
| 3d_25C | 7d_30C | 0.010735 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.736583 | no |
| 5d_25C | 7d_15C | 0.552721 | no |
| 5d_25C | 7d_30C | 0.976742 | no |
| 5d_25C | 10d_25C | 0.012904 | yes |
| 7d_25C | 7d_15C | 0.282443 | no |
| 7d_25C | 7d_30C | 0.772073 | no |
| 7d_25C | 10d_25C | 0.055491 | no |
| 7d_15C | 7d_30C | 0.521135 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.014971 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5752.t1 MSNLPYAADAESPLKPAELQVLRAQYEKEGDYVGIQTKFNYAWGLIKSNIRSEQQEGVRLLSEIFRGAPERRREC LYYLALGNFKLGNYGEARRYNDLLLEKEPANLQAASLGSLIDDKVAKEGLVGVAIVSGLALVAGIVGSLVIKGAR RR* |
| Coding | >Pro_DTO377G3_2|g5752.t1 ATGTCCAATCTTCCATACGCTGCTGATGCGGAAAGTCCCTTGAAACCCGCGGAGCTACAGGTCCTGAGAGCCCAA TACGAGAAAGAAGGCGACTATGTCGGGATCCAGACAAAGTTCAACTACGCATGGGGTCTGATCAAATCCAACATC CGTTCCGAACAGCAAGAAGGCGTTCGCTTGCTTTCAGAGATCTTCCGTGGAGCTCCGGAGCGACGACGCGAATGC CTCTATTATCTAGCCCTCGGCAACTTCAAGCTAGGGAACTACGGCGAAGCCCGCCGATACAACGATTTGCTCCTG GAGAAGGAGCCCGCAAACCTCCAGGCTGCCAGCCTTGGGTCGCTCATCGATGATAAAGTCGCCAAGGAGGGTCTG GTAGGCGTCGCGATTGTTAGTGGCTTGGCTCTCGTCGCGGGTATCGTTGGTAGTCTGGTGATCAAGGGAGCCAGA AGACGATAA |
| Transcript | >Pro_DTO377G3_2|g5752.t1 ATGTCCAATCTTCCATACGCTGCTGATGCGGAAAGTCCCTTGAAACCCGCGGAGCTACAGGTCCTGAGAGCCCAA TACGAGAAAGAAGGCGACTATGTCGGGATCCAGACAAAGTTCAACTACGCATGGGGTCTGATCAAATCCAACATC CGTTCCGAACAGCAAGAAGGCGTTCGCTTGCTTTCAGAGATCTTCCGTGGAGCTCCGGAGCGACGACGCGAATGC CTCTATTATCTAGCCCTCGGCAACTTCAAGCTAGGGAACTACGGCGAAGCCCGCCGATACAACGATTTGCTCCTG GAGAAGGAGCCCGCAAACCTCCAGGCTGCCAGCCTTGGGTCGCTCATCGATGATAAAGTCGCCAAGGAGGGTCTG GTAGGCGTCGCGATTGTTAGTGGCTTGGCTCTCGTCGCGGGTATCGTTGGTAGTCTGGTGATCAAGGGAGCCAGA AGACGATAA |
| Gene | >Pro_DTO377G3_2|g5752.t1 ATGTCCAATCTTCCATGTAGGTGGTTCCGACCGATTGCCTGATGCCTGATGTTTGAAGACTGACTTGCTGACTTG TTATGTCACTCCAGACGCTGCTGATGCGGAAAGGTTTGTTTTCTGCGGAAACTCCGAAAGAAAATATCGGAATCG TCCGAACTGACTTGACTATCACCGACACAGTCCCTTGAAACCCGCGGAGCTACAGGTCCTGAGAGCCCAATACGA GAAAGAAGGCGACTATGTCGGGATCCAGACAAAGTTCAACTACGCATGGGTATCGTTTATCCAGTCCTGATCAGG TGTGCCCGCGCTGACCGGTGTTCCCCGCCTATGCGGGGTTGGCATTGACTATAGGGTCTGATCAAATCCAACATC CGTTCCGAACAGCAAGAAGGCGTTCGCTTGCTTTCAGAGATCTTCCGTGGAGCTCCGGAGCGACGACGCGAATGC CTCTATTATCTAGCCCTCGGCAACTTCAAGCTAGGGAACTACGGCGAAGCCCGCCGATACAACGATTTGCTCCTG GAGAAGGAGCCCGCAAACCTCCAGGCTGCCAGCCTTGGGTCGCTCATCGATGATAAAGTCGCCAAGGAGGGTCTG GTAGGCGTCGCGATTGTTAGTGGCTTGGCTCTCGTCGCGGGTATCGTTGGTAGTCTGGTGATCAAGGGAGCCAGA AGACGATAA |