Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g575.t1
Gene name
Locationscaffold_01:1486774..1488258
Strand-
Gene length (bp)1484
Transcript length (bp)1284
Coding sequence length (bp)1284
Protein length (aa) 428

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16010 CDH-cyt Cytochrome domain of cellobiose dehydrogenase 2.3E-24 28 196
PF03188 Cytochrom_B561 Eukaryotic cytochrome b561 4.3E-09 230 353
PF10348 DUF2427 Domain of unknown function (DUF2427) 8.4E-06 229 313

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 24 0.45

Transmembrane Domains

Domain # Start End Length
1 227 249 22
2 258 280 22
3 295 314 19
4 334 356 22
5 360 382 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 1.69 0.19 3.19
5d_25C Five days - 25 degrees Celsius 1.59 0.18 3.00
7d_25C Seven days - 25 degrees Celsius 1.80 0.24 3.37
10d_25C Ten days - 25 degrees Celsius 0.91 0.00 1.85
7d_15C Seven days - 15 degrees Celsius 6.39 2.07 10.70
7d_30C Seven days - 30 degrees Celsius 2.14 0.31 3.97

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.936891 no
3d_25C 7d_25C 0.932718 no
3d_25C 7d_15C 0.002761 yes
3d_25C 7d_30C 0.708992 no
3d_25C 10d_25C 0.281482 no
5d_25C 7d_25C 0.864027 no
5d_25C 7d_15C 0.002761 yes
5d_25C 7d_30C 0.628504 no
5d_25C 10d_25C 0.345179 no
7d_25C 7d_15C 0.004450 yes
7d_25C 7d_30C 0.799436 no
7d_25C 10d_25C 0.233034 no
7d_15C 7d_30C 0.011993 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.115508 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g575.t1
MRLPTRPEVVILLGHLFHSIALASAVSDSTTTSIFNLPLSQNQANFIFAINIPDGSTDLYFHMSGPTDYSWIAVG
TGNEMKDSLMFVIYSKANGENITFSPRLSSGEQEPVYSSSIKVDILNGTGISDNVMTVNARCSNCTQWETGSLDL
KSTSQPWIFGLGPTGSSAAMLRSNSQTANIERHSEYGIFTMDMVRATGGSGGLPTSYTNSTGSVLSKSITNDSNW
PSIIHGLCLCGALILLMPAGVVLLRVAPKSVRWHWINQTLSSAIAIVGIIIGFYLSTMFTKSQNYGSAHQILGII
LLLAMLAQWGMGFWHHRVYKQTKSPTRFGIIHRYFGHIIIFLAIVNGGIGLTWSSASKSVVIGYSIAVIIIGLGL
VLIIGWARWISRHGQQGFTSAPVNLRGLSGDDSHDYLDQHSDILPYNPYGRL*
Coding >Pro_DTO377G3_2|g575.t1
ATGCGACTGCCTACAAGGCCCGAAGTCGTGATTTTGCTAGGCCATTTATTTCACTCTATTGCCCTTGCGTCTGCC
GTGTCCGACTCGACTACTACGAGCATTTTCAATCTGCCTCTTAGCCAGAACCAGGCCAATTTCATTTTTGCTATC
AACATCCCCGATGGCTCCACCGATCTCTACTTCCACATGTCTGGGCCGACGGACTATTCATGGATTGCGGTCGGG
ACTGGAAATGAAATGAAAGACTCTCTCATGTTTGTGATCTACTCCAAGGCCAATGGGGAAAATATTACCTTCAGC
CCTCGTCTCTCCTCCGGTGAACAAGAACCTGTGTATTCATCTTCGATCAAGGTGGACATTCTCAATGGTACAGGT
ATCTCCGATAACGTCATGACCGTGAATGCTAGGTGCTCAAACTGCACCCAGTGGGAGACTGGATCATTGGATTTG
AAATCCACGTCTCAGCCGTGGATTTTTGGGCTAGGTCCAACTGGTAGTTCGGCTGCCATGCTACGCAGTAACTCT
CAAACGGCAAACATAGAGAGACACTCAGAATATGGCATCTTCACTATGGATATGGTCCGCGCAACCGGCGGTTCG
GGTGGACTACCAACGTCGTATACAAACTCAACTGGCTCGGTGCTGAGCAAATCAATTACAAACGACAGCAACTGG
CCTAGCATCATTCACGGTCTGTGCCTTTGTGGAGCTCTCATCCTTCTGATGCCAGCCGGCGTCGTTCTCCTCCGT
GTTGCTCCGAAAAGTGTCCGGTGGCACTGGATCAACCAGACACTTTCTTCAGCAATTGCGATCGTCGGCATAATA
ATCGGCTTTTACCTAAGCACGATGTTCACAAAATCGCAAAACTACGGCTCCGCGCACCAGATCCTTGGTATTATC
CTTCTGCTTGCAATGCTAGCTCAGTGGGGAATGGGATTTTGGCATCACCGGGTATATAAACAGACTAAGTCACCT
ACCAGGTTTGGCATTATCCATCGCTACTTTGGACATATCATCATCTTCCTCGCGATCGTCAACGGAGGCATCGGA
CTTACTTGGTCATCTGCGTCCAAGTCCGTTGTAATAGGATATTCCATCGCTGTGATCATTATTGGGCTTGGGCTT
GTGCTTATCATTGGTTGGGCAAGGTGGATATCCAGACATGGCCAACAGGGTTTTACAAGTGCGCCTGTCAATCTC
CGAGGACTTAGTGGTGATGATTCCCACGATTACCTTGATCAGCACTCGGACATACTACCTTATAACCCTTACGGG
CGACTGTGA
Transcript >Pro_DTO377G3_2|g575.t1
ATGCGACTGCCTACAAGGCCCGAAGTCGTGATTTTGCTAGGCCATTTATTTCACTCTATTGCCCTTGCGTCTGCC
GTGTCCGACTCGACTACTACGAGCATTTTCAATCTGCCTCTTAGCCAGAACCAGGCCAATTTCATTTTTGCTATC
AACATCCCCGATGGCTCCACCGATCTCTACTTCCACATGTCTGGGCCGACGGACTATTCATGGATTGCGGTCGGG
ACTGGAAATGAAATGAAAGACTCTCTCATGTTTGTGATCTACTCCAAGGCCAATGGGGAAAATATTACCTTCAGC
CCTCGTCTCTCCTCCGGTGAACAAGAACCTGTGTATTCATCTTCGATCAAGGTGGACATTCTCAATGGTACAGGT
ATCTCCGATAACGTCATGACCGTGAATGCTAGGTGCTCAAACTGCACCCAGTGGGAGACTGGATCATTGGATTTG
AAATCCACGTCTCAGCCGTGGATTTTTGGGCTAGGTCCAACTGGTAGTTCGGCTGCCATGCTACGCAGTAACTCT
CAAACGGCAAACATAGAGAGACACTCAGAATATGGCATCTTCACTATGGATATGGTCCGCGCAACCGGCGGTTCG
GGTGGACTACCAACGTCGTATACAAACTCAACTGGCTCGGTGCTGAGCAAATCAATTACAAACGACAGCAACTGG
CCTAGCATCATTCACGGTCTGTGCCTTTGTGGAGCTCTCATCCTTCTGATGCCAGCCGGCGTCGTTCTCCTCCGT
GTTGCTCCGAAAAGTGTCCGGTGGCACTGGATCAACCAGACACTTTCTTCAGCAATTGCGATCGTCGGCATAATA
ATCGGCTTTTACCTAAGCACGATGTTCACAAAATCGCAAAACTACGGCTCCGCGCACCAGATCCTTGGTATTATC
CTTCTGCTTGCAATGCTAGCTCAGTGGGGAATGGGATTTTGGCATCACCGGGTATATAAACAGACTAAGTCACCT
ACCAGGTTTGGCATTATCCATCGCTACTTTGGACATATCATCATCTTCCTCGCGATCGTCAACGGAGGCATCGGA
CTTACTTGGTCATCTGCGTCCAAGTCCGTTGTAATAGGATATTCCATCGCTGTGATCATTATTGGGCTTGGGCTT
GTGCTTATCATTGGTTGGGCAAGGTGGATATCCAGACATGGCCAACAGGGTTTTACAAGTGCGCCTGTCAATCTC
CGAGGACTTAGTGGTGATGATTCCCACGATTACCTTGATCAGCACTCGGACATACTACCTTATAACCCTTACGGG
CGACTGTGA
Gene >Pro_DTO377G3_2|g575.t1
ATGCGACTGCCTACAAGGCCCGAAGTCGTGATTTTGCTAGGTCGGTCAGGTCCCGATGCTTAGCCATTTTGGTAT
TGCTTCACATGTTATCTAACAGAATCACTGGCTCTTAACAGGCCATTTATTTCACTCTATTGCCCTTGCGTCTGC
CGTGTCCGACTCGACTACTACGAGCATTTTCAATCTGCCTCTTAGCCAGAACCAGGCCAATTTCATTTTTGCTAT
CAACATCCCCGATGGCTCCACCGATCTCTACTTCCACATGTCTGGGCCGACGGACTATTCATGGATTGCGGTCGG
GACTGGAAATGAAATGAAAGACTCTCTCATGTTTGTGATCTACTCCAAGGCCAATGGGGAAAGTGAGTTGACGTG
ACCCAAATACCTCTGAGAAGACAATCCTGACGCGCCTGTTTAGATATTACCTTCAGCCCTCGTCTCTCCTCCGGT
GAACAAGAACCTGTGTATTCATCTTCGATCAAGGTGGACATTCTCAATGGTACAGGTATCTCCGATAACGTCATG
ACCGTGAATGCTAGGTGCTCAAACTGCACCCAGTGGGAGACTGGATCATTGGATTTGAAATCCACGTCTCAGCCG
TGGATTTTTGGGCTAGGTCCAACTGGTAGTTCGGCTGCCATGCTACGCAGTAACTCTCAAACGGCAAACATAGAG
AGACACTCAGAATATGGTTCGTGATATCTTACTTGAACGGTATTTACTCGGGCTCCTGGACACTAATTTGTTTTG
ACATCCTAGGCATCTTCACTATGGATATGGTCCGCGCAACCGGCGGTTCGGGTGGACTACCAACGTCGTATACAA
ACTCAACTGGCTCGGTGCTGAGCAAATCAATTACAAACGACAGCAACTGGCCTAGCATCATTCACGGTCTGTGCC
TTTGTGGAGCTCTCATCCTTCTGATGCCAGCCGGCGTCGTTCTCCTCCGTGTTGCTCCGAAAAGTGTCCGGTGGC
ACTGGATCAACCAGACACTTTCTTCAGCAATTGCGATCGTCGGCATAATAATCGGCTTTTACCTAAGCACGATGT
TCACAAAATCGCAAAACTACGGCTCCGCGCACCAGATCCTTGGTATTATCCTTCTGCTTGCAATGCTAGCTCAGT
GGGGAATGGGATTTTGGCATCACCGGGTATATAAACAGACTAAGTCACCTACCAGGTTTGGCATTATCCATCGCT
ACTTTGGACATATCATCATCTTCCTCGCGATCGTCAACGGAGGCATCGGACTTACTTGGTCATCTGCGTCCAAGT
CCGTTGTAATAGGATATTCCATCGCTGTGATCATTATTGGGCTTGGGCTTGTGCTTATCATTGGTTGGGCAAGGT
GGATATCCAGACATGGCCAACAGGGTTTTACAAGTGCGCCTGTCAATCTCCGAGGACTTAGTGGTGATGATTCCC
ACGATTACCTTGATCAGCACTCGGACATACTACCTTATAACCCTTACGGGCGACTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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