© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5712.t1 |
| Gene name | |
| Location | scaffold_14:218914..219846 |
| Strand | - |
| Gene length (bp) | 932 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05368 | NmrA | NmrA-like family | 1.2E-23 | 6 | 225 |
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 1.6E-18 | 10 | 156 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.2E-04 | 8 | 78 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.20 | 1.97 | 12.43 |
| 5d_25C | Five days - 25 degrees Celsius | 9.62 | 3.13 | 16.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.80 | 2.78 | 14.83 |
| 10d_25C | Ten days - 25 degrees Celsius | 7.29 | 1.97 | 12.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.61 | 8.26 | 30.95 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.76 | 4.13 | 19.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.541030 | no |
| 3d_25C | 7d_25C | 0.696925 | no |
| 3d_25C | 7d_15C | 0.004450 | yes |
| 3d_25C | 7d_30C | 0.226177 | no |
| 3d_25C | 10d_25C | 0.985441 | no |
| 5d_25C | 7d_25C | 0.873742 | no |
| 5d_25C | 7d_15C | 0.041798 | yes |
| 5d_25C | 7d_30C | 0.671927 | no |
| 5d_25C | 10d_25C | 0.569569 | no |
| 7d_25C | 7d_15C | 0.018838 | yes |
| 7d_25C | 7d_30C | 0.503526 | no |
| 7d_25C | 10d_25C | 0.721361 | no |
| 7d_15C | 7d_30C | 0.145347 | no |
| 7d_15C | 10d_25C | 0.006371 | yes |
| 7d_30C | 10d_25C | 0.243976 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5712.t1 MANIKVALAGASGNLGPAVLKELLAAGFDVTVLTRQGSDKTFDSRAHVAQVDYESLDSLKAALSGQEAVVSTLHV GAVPISTHLRLIDVAVAAGVKRFIPSEYGCDTTNPLTSKLPVYGDKVVIQEHLKNVAKESGLSYSFLITGLFLDW GLEKGLIVNFAGPATLYDGGDRRFSATTLAGIGKGVVGIINNLDATKNSTVYINEARVTQNELLELSGKSLETKV VQTADLEQQAFAELAKPAPNRTIFATNLILRAVFGEGYGGLFDPEKVSNELFGLKILSKEELRGLIPK* |
| Coding | >Pro_DTO377G3_2|g5712.t1 ATGGCAAACATCAAGGTTGCTCTTGCCGGAGCCAGCGGAAACCTCGGTCCCGCCGTACTCAAGGAACTGCTCGCC GCAGGCTTTGACGTGACAGTCCTCACCCGACAAGGCAGCGATAAAACCTTCGATTCCCGCGCGCACGTCGCACAA GTGGACTACGAGTCCCTCGACTCCCTCAAGGCCGCTCTGTCTGGACAAGAAGCCGTAGTCAGCACTCTACATGTC GGCGCAGTTCCGATATCCACTCATCTGCGCTTGATTGATGTAGCAGTAGCAGCTGGTGTCAAGCGGTTCATCCCG TCGGAATACGGCTGCGACACCACGAACCCCCTCACGTCCAAATTGCCTGTCTACGGCGATAAGGTCGTCATCCAG GAACATCTCAAGAATGTCGCTAAGGAATCTGGCCTCAGCTACTCGTTCCTCATTACTGGTCTTTTCCTTGACTGG GGTCTTGAGAAGGGTCTTATAGTCAATTTTGCTGGCCCGGCGACGCTGTATGATGGCGGTGATCGCCGTTTTAGT GCGACGACTCTCGCTGGTATTGGCAAGGGAGTTGTTGGGATCATCAACAACCTTGACGCTACTAAGAACTCCACG GTCTATATCAATGAGGCTAGGGTCACGCAGAATGAGCTCCTGGAATTGTCTGGAAAGAGCCTTGAGACGAAGGTT GTTCAGACTGCAGATCTGGAACAGCAGGCTTTTGCGGAACTGGCTAAACCGGCCCCCAACCGGACAATCTTTGCT ACGAATTTGATTCTGCGGGCTGTCTTTGGTGAAGGATACGGCGGTCTTTTCGACCCTGAGAAGGTCTCGAATGAG TTGTTTGGTCTGAAGATTTTGTCCAAGGAGGAACTCCGCGGCCTGATCCCCAAGTAA |
| Transcript | >Pro_DTO377G3_2|g5712.t1 ATGGCAAACATCAAGGTTGCTCTTGCCGGAGCCAGCGGAAACCTCGGTCCCGCCGTACTCAAGGAACTGCTCGCC GCAGGCTTTGACGTGACAGTCCTCACCCGACAAGGCAGCGATAAAACCTTCGATTCCCGCGCGCACGTCGCACAA GTGGACTACGAGTCCCTCGACTCCCTCAAGGCCGCTCTGTCTGGACAAGAAGCCGTAGTCAGCACTCTACATGTC GGCGCAGTTCCGATATCCACTCATCTGCGCTTGATTGATGTAGCAGTAGCAGCTGGTGTCAAGCGGTTCATCCCG TCGGAATACGGCTGCGACACCACGAACCCCCTCACGTCCAAATTGCCTGTCTACGGCGATAAGGTCGTCATCCAG GAACATCTCAAGAATGTCGCTAAGGAATCTGGCCTCAGCTACTCGTTCCTCATTACTGGTCTTTTCCTTGACTGG GGTCTTGAGAAGGGTCTTATAGTCAATTTTGCTGGCCCGGCGACGCTGTATGATGGCGGTGATCGCCGTTTTAGT GCGACGACTCTCGCTGGTATTGGCAAGGGAGTTGTTGGGATCATCAACAACCTTGACGCTACTAAGAACTCCACG GTCTATATCAATGAGGCTAGGGTCACGCAGAATGAGCTCCTGGAATTGTCTGGAAAGAGCCTTGAGACGAAGGTT GTTCAGACTGCAGATCTGGAACAGCAGGCTTTTGCGGAACTGGCTAAACCGGCCCCCAACCGGACAATCTTTGCT ACGAATTTGATTCTGCGGGCTGTCTTTGGTGAAGGATACGGCGGTCTTTTCGACCCTGAGAAGGTCTCGAATGAG TTGTTTGGTCTGAAGATTTTGTCCAAGGAGGAACTCCGCGGCCTGATCCCCAAGTAA |
| Gene | >Pro_DTO377G3_2|g5712.t1 ATGGCAAACATCAAGGTTGCTCTTGCCGGAGTATGTCAGCAAACGACCCTCATACCATCCCATTCTCTAACATGA TCCAGGCCAGCGGAAACCTCGGTCCCGCCGTACTCAAGGAACTGCTCGCCGCAGGCTTTGACGTGACAGTCCTCA CCCGACAAGGCAGCGATAAAACCTTCGATTCCCGCGCGCACGTCGCACAAGTGGACTACGAGTCCCTCGACTCCC TCAAGGCCGCTCTGTCTGGACAAGAAGCCGTAGTCAGCACTCTACATGTCGGCGCAGTTCCGATATCCACTCATC TGCGCTTGATTGATGTAGCAGTAGCAGCTGGTGTCAAGCGGTTCATCCCGTCGGAATACGGCTGCGACACCACGA ACCCCCTCACGTCCAAATTGCCTGTCTACGGCGATAAGGTCGTCATCCAGGAACATCTCAAGAATGTCGCTAAGG AATCTGGCCTCAGCTACTCGTTCCTCATTACTGGTCTTTTCCTTGACTGGGGTCTTGAGAAGGGTCTTATAGTCA ATTTTGCTGGCCCGGCGACGCTGTATGATGGCGGTGATCGCCGTTTTAGTGCGACGACTCTCGCTGGTATTGGCA AGGGAGTTGTTGGGATCATCAACAACCTTGACGCTACTAAGAACTCCACGGTCTATATCAATGAGGCTAGGGTCA CGCAGAATGAGCTCCTGGAATTGTCTGGAAAGAGCCTTGAGACGAAGGTTGTTCAGACTGCAGATCTGGAACAGC AGGCTTTTGCGGAACTGGCTAAACCGGCCCCCAACCGGACAATCTTTGCTACGAATTTGATTCTGCGGGCTGTCT TTGGTGAAGGATACGGCGGTCTTTTCGACCCTGAGAAGGTCTCGAATGAGTTGTTTGGTCTGAAGATTTTGTCCA AGGAGGAACTCCGCGGCCTGATCCCCAAGTAA |