© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5711.t1 |
| Gene name | |
| Location | scaffold_14:215969..218679 |
| Strand | + |
| Gene length (bp) | 2710 |
| Transcript length (bp) | 2613 |
| Coding sequence length (bp) | 2613 |
| Protein length (aa) | 871 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01915 | Glyco_hydro_3_C | Glycosyl hydrolase family 3 C-terminal domain | 4.3E-46 | 411 | 660 |
| PF00933 | Glyco_hydro_3 | Glycosyl hydrolase family 3 N terminal domain | 1.7E-35 | 99 | 349 |
| PF14310 | Fn3-like | Fibronectin type III-like domain | 1.0E-20 | 780 | 853 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.48 | 1.25 | 5.70 |
| 5d_25C | Five days - 25 degrees Celsius | 2.24 | 0.69 | 3.80 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.28 | 0.69 | 3.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.25 | 0.69 | 3.80 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.34 | 1.70 | 6.98 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.35 | 2.17 | 8.54 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.271936 | no |
| 3d_25C | 7d_25C | 0.287123 | no |
| 3d_25C | 7d_15C | 0.610331 | no |
| 3d_25C | 7d_30C | 0.246169 | no |
| 3d_25C | 10d_25C | 0.276910 | no |
| 5d_25C | 7d_25C | 0.979248 | no |
| 5d_25C | 7d_15C | 0.062457 | no |
| 5d_25C | 7d_30C | 0.007779 | yes |
| 5d_25C | 10d_25C | 0.996786 | no |
| 7d_25C | 7d_15C | 0.067113 | no |
| 7d_25C | 7d_30C | 0.009124 | yes |
| 7d_25C | 10d_25C | 0.981280 | no |
| 7d_15C | 7d_30C | 0.621139 | no |
| 7d_15C | 10d_25C | 0.064808 | no |
| 7d_30C | 10d_25C | 0.009124 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5711.t1 MAPWVHLTLVSLLTPLLLASPVPEEFESTTHLHERAAEGYESPAYYPTPPGGWISDWSEAYSKAHILVSNMTLAE KVNLTTGTGFFMGPCVGQTGSVPRLGVPNLCLQDSPLGVRNSDHNTAFPPGITVGATFNKELMYERGVGLGEEAR GKGVNVLLGPSVGALGRKPRGGRNWEGFGADPVLQAFGGAQTIKGMQSTGAIAAIKHYIGNEQEMHRMGSVITQG YSSNIDDRTLHELYLWPFAEGVRAGVGSLMTAYSDVNSSSCSQNSKLVNGILKDELGFQGFVMTDWLGHYSGVAS AIAGLDMSMPGDGAVPLFGDSYWGPELSRSVLNGSVPVDRLNDMVQRIVATWYKHGQDKDYPLPNFSTNTQDKEG LLYPGALFSPSGVVNQFVDVRGNHNITVRAVAREAITLLKNDMDILPLRSNDSLKVFGTDAGGNPDGLNSCADQG CNKGVLTMGWGSGTARLPYLITPQEAISNITKNAEFHITDNFPSDVTANANDIALVFISADSGENYITVEGNPGD RTEAGLKAWHDGDDLVKAAAEKFSNVVVIVHTVGPILMEEWIELKSVKAVIVAHLPGQEAGNSLTDILFGDYSPS GHMPYTIPRSEDNYPDSVGLISQPFGQIQDTYTEGLYIDYRHFIKANITPRYAFGHGLSYTTFNFSQPSLSTKTP LDSAYPAPRPTKPPTLSYNTSIPDASEVAWSSTSFTRIWRYLYPYLSNPQSITATNTYPYPDGYSTEPHAVPRAG GGEGGNPALFETVFTVQLEVQNTGKRTGKAVAQLYVELPSSLGLETPALQLRQFEKTRELAPGQSETVTLDITRK DVSVWDVVVQDWKAPVNGRGIKLWVGNSVADLPVLCVVGGQCSAQ* |
| Coding | >Pro_DTO377G3_2|g5711.t1 ATGGCTCCTTGGGTGCATCTAACTCTAGTCTCTCTTTTGACCCCGCTTCTCCTAGCTTCCCCAGTACCAGAAGAA TTCGAATCTACTACCCACCTACACGAGAGAGCAGCAGAAGGCTATGAATCACCTGCATACTATCCCACACCTCCA GGAGGCTGGATCTCCGACTGGAGTGAAGCCTACTCCAAGGCGCATATTCTCGTCAGTAATATGACGCTGGCCGAG AAAGTCAATCTGACTACAGGCACTGGCTTCTTCATGGGGCCCTGCGTAGGGCAGACAGGCAGCGTGCCTCGCCTG GGTGTGCCCAACTTGTGCCTCCAAGACAGCCCTCTGGGAGTCCGCAACTCGGACCACAATACTGCCTTCCCGCCT GGTATCACGGTTGGCGCGACCTTTAACAAAGAGCTCATGTATGAGAGAGGTGTTGGGCTCGGCGAGGAGGCTCGC GGTAAGGGAGTCAATGTGCTCCTCGGACCATCCGTGGGAGCACTGGGACGCAAGCCACGCGGTGGACGGAACTGG GAAGGCTTCGGTGCTGATCCTGTTCTGCAGGCTTTTGGAGGTGCCCAGACTATAAAGGGTATGCAGAGTACCGGT GCTATCGCGGCTATCAAGCATTACATTGGTAATGAGCAGGAAATGCATCGCATGGGAAGTGTTATTACCCAGGGC TATTCGTCTAATATTGATGATCGCACATTGCATGAACTGTACCTCTGGCCTTTTGCCGAGGGTGTTCGTGCGGGT GTTGGGTCCTTGATGACAGCTTATTCCGATGTCAATAGCTCTTCGTGCTCTCAGAACAGCAAGTTGGTCAATGGG ATTCTCAAGGATGAGCTTGGCTTCCAAGGATTTGTGATGACGGACTGGCTGGGTCATTACTCTGGCGTTGCGTCG GCCATAGCTGGTTTGGATATGTCCATGCCTGGCGATGGAGCAGTTCCTTTGTTCGGAGATTCATACTGGGGTCCT GAGCTGTCGCGTTCAGTTTTGAATGGCAGTGTTCCTGTCGACCGTCTCAACGATATGGTTCAACGTATCGTTGCT ACTTGGTACAAACACGGACAGGATAAGGACTATCCCTTGCCAAACTTCTCGACCAACACCCAGGATAAGGAGGGC TTGCTTTACCCCGGTGCTTTATTTTCTCCATCTGGTGTCGTTAACCAGTTTGTCGATGTGAGAGGAAATCACAAC ATCACCGTGAGAGCCGTCGCACGGGAAGCAATTACCTTGCTGAAGAACGATATGGACATCCTTCCTCTGCGTAGC AATGATTCTCTCAAGGTATTCGGCACAGACGCAGGTGGAAATCCAGACGGTCTCAACTCATGCGCCGACCAAGGG TGCAACAAAGGCGTGCTGACCATGGGCTGGGGCAGTGGCACAGCCAGGCTACCCTATCTGATCACACCGCAAGAG GCAATCTCTAATATCACCAAGAATGCCGAGTTCCACATCACCGACAACTTCCCCTCAGACGTTACCGCCAATGCC AACGATATCGCTCTCGTCTTCATCAGTGCCGATTCAGGCGAAAACTATATCACAGTCGAAGGGAACCCGGGAGAT CGAACCGAAGCTGGACTCAAAGCTTGGCACGATGGCGACGATCTCGTCAAAGCAGCAGCAGAGAAGTTTTCCAAT GTAGTCGTGATTGTTCACACCGTCGGTCCCATCCTGATGGAAGAGTGGATTGAACTCAAGTCCGTGAAAGCAGTG ATCGTGGCACATCTCCCTGGACAAGAAGCTGGCAACTCCCTTACCGATATCCTATTTGGCGACTATAGTCCAAGC GGCCACATGCCATACACCATTCCTCGCAGCGAAGATAATTACCCGGATAGCGTGGGATTGATCAGTCAACCATTC GGCCAGATCCAAGATACCTATACCGAGGGGCTATACATCGACTACCGCCACTTCATTAAAGCCAATATCACACCT CGGTACGCATTCGGCCACGGTCTCTCTTACACCACCTTCAACTTTTCCCAGCCTTCGCTGTCAACAAAAACCCCG CTAGACTCAGCTTACCCAGCTCCACGACCCACAAAGCCGCCAACCCTGTCCTACAACACCAGCATTCCGGACGCG TCAGAAGTCGCCTGGTCGTCTACCAGCTTCACCCGCATCTGGCGCTACCTTTACCCCTACCTTTCCAACCCGCAG TCGATCACTGCCACGAATACATACCCCTACCCGGACGGCTACAGCACCGAGCCGCATGCAGTCCCCCGGGCCGGG GGTGGCGAGGGGGGGAATCCCGCTCTCTTCGAGACTGTATTTACGGTCCAGTTGGAGGTCCAGAATACGGGTAAG CGAACCGGTAAGGCGGTCGCCCAGCTGTATGTTGAGCTTCCGTCTAGTCTGGGACTGGAGACGCCGGCCTTGCAG CTCCGGCAGTTTGAAAAGACAAGGGAGCTTGCGCCTGGTCAGAGTGAGACGGTTACGCTGGATATTACCCGGAAG GACGTTAGTGTTTGGGATGTTGTGGTGCAGGATTGGAAGGCTCCTGTCAATGGACGCGGCATTAAGCTCTGGGTT GGGAATAGTGTTGCTGATCTGCCTGTTCTCTGTGTGGTCGGTGGACAGTGTTCGGCTCAATAA |
| Transcript | >Pro_DTO377G3_2|g5711.t1 ATGGCTCCTTGGGTGCATCTAACTCTAGTCTCTCTTTTGACCCCGCTTCTCCTAGCTTCCCCAGTACCAGAAGAA TTCGAATCTACTACCCACCTACACGAGAGAGCAGCAGAAGGCTATGAATCACCTGCATACTATCCCACACCTCCA GGAGGCTGGATCTCCGACTGGAGTGAAGCCTACTCCAAGGCGCATATTCTCGTCAGTAATATGACGCTGGCCGAG AAAGTCAATCTGACTACAGGCACTGGCTTCTTCATGGGGCCCTGCGTAGGGCAGACAGGCAGCGTGCCTCGCCTG GGTGTGCCCAACTTGTGCCTCCAAGACAGCCCTCTGGGAGTCCGCAACTCGGACCACAATACTGCCTTCCCGCCT GGTATCACGGTTGGCGCGACCTTTAACAAAGAGCTCATGTATGAGAGAGGTGTTGGGCTCGGCGAGGAGGCTCGC GGTAAGGGAGTCAATGTGCTCCTCGGACCATCCGTGGGAGCACTGGGACGCAAGCCACGCGGTGGACGGAACTGG GAAGGCTTCGGTGCTGATCCTGTTCTGCAGGCTTTTGGAGGTGCCCAGACTATAAAGGGTATGCAGAGTACCGGT GCTATCGCGGCTATCAAGCATTACATTGGTAATGAGCAGGAAATGCATCGCATGGGAAGTGTTATTACCCAGGGC TATTCGTCTAATATTGATGATCGCACATTGCATGAACTGTACCTCTGGCCTTTTGCCGAGGGTGTTCGTGCGGGT GTTGGGTCCTTGATGACAGCTTATTCCGATGTCAATAGCTCTTCGTGCTCTCAGAACAGCAAGTTGGTCAATGGG ATTCTCAAGGATGAGCTTGGCTTCCAAGGATTTGTGATGACGGACTGGCTGGGTCATTACTCTGGCGTTGCGTCG GCCATAGCTGGTTTGGATATGTCCATGCCTGGCGATGGAGCAGTTCCTTTGTTCGGAGATTCATACTGGGGTCCT GAGCTGTCGCGTTCAGTTTTGAATGGCAGTGTTCCTGTCGACCGTCTCAACGATATGGTTCAACGTATCGTTGCT ACTTGGTACAAACACGGACAGGATAAGGACTATCCCTTGCCAAACTTCTCGACCAACACCCAGGATAAGGAGGGC TTGCTTTACCCCGGTGCTTTATTTTCTCCATCTGGTGTCGTTAACCAGTTTGTCGATGTGAGAGGAAATCACAAC ATCACCGTGAGAGCCGTCGCACGGGAAGCAATTACCTTGCTGAAGAACGATATGGACATCCTTCCTCTGCGTAGC AATGATTCTCTCAAGGTATTCGGCACAGACGCAGGTGGAAATCCAGACGGTCTCAACTCATGCGCCGACCAAGGG TGCAACAAAGGCGTGCTGACCATGGGCTGGGGCAGTGGCACAGCCAGGCTACCCTATCTGATCACACCGCAAGAG GCAATCTCTAATATCACCAAGAATGCCGAGTTCCACATCACCGACAACTTCCCCTCAGACGTTACCGCCAATGCC AACGATATCGCTCTCGTCTTCATCAGTGCCGATTCAGGCGAAAACTATATCACAGTCGAAGGGAACCCGGGAGAT CGAACCGAAGCTGGACTCAAAGCTTGGCACGATGGCGACGATCTCGTCAAAGCAGCAGCAGAGAAGTTTTCCAAT GTAGTCGTGATTGTTCACACCGTCGGTCCCATCCTGATGGAAGAGTGGATTGAACTCAAGTCCGTGAAAGCAGTG ATCGTGGCACATCTCCCTGGACAAGAAGCTGGCAACTCCCTTACCGATATCCTATTTGGCGACTATAGTCCAAGC GGCCACATGCCATACACCATTCCTCGCAGCGAAGATAATTACCCGGATAGCGTGGGATTGATCAGTCAACCATTC GGCCAGATCCAAGATACCTATACCGAGGGGCTATACATCGACTACCGCCACTTCATTAAAGCCAATATCACACCT CGGTACGCATTCGGCCACGGTCTCTCTTACACCACCTTCAACTTTTCCCAGCCTTCGCTGTCAACAAAAACCCCG CTAGACTCAGCTTACCCAGCTCCACGACCCACAAAGCCGCCAACCCTGTCCTACAACACCAGCATTCCGGACGCG TCAGAAGTCGCCTGGTCGTCTACCAGCTTCACCCGCATCTGGCGCTACCTTTACCCCTACCTTTCCAACCCGCAG TCGATCACTGCCACGAATACATACCCCTACCCGGACGGCTACAGCACCGAGCCGCATGCAGTCCCCCGGGCCGGG GGTGGCGAGGGGGGGAATCCCGCTCTCTTCGAGACTGTATTTACGGTCCAGTTGGAGGTCCAGAATACGGGTAAG CGAACCGGTAAGGCGGTCGCCCAGCTGTATGTTGAGCTTCCGTCTAGTCTGGGACTGGAGACGCCGGCCTTGCAG CTCCGGCAGTTTGAAAAGACAAGGGAGCTTGCGCCTGGTCAGAGTGAGACGGTTACGCTGGATATTACCCGGAAG GACGTTAGTGTTTGGGATGTTGTGGTGCAGGATTGGAAGGCTCCTGTCAATGGACGCGGCATTAAGCTCTGGGTT GGGAATAGTGTTGCTGATCTGCCTGTTCTCTGTGTGGTCGGTGGACAGTGTTCGGCTCAATAA |
| Gene | >Pro_DTO377G3_2|g5711.t1 ATGGCTCCTTGGGTGCATCTAACTCTAGTCTCTCTTTTGACCCCGCTTCTCCTAGCTTCCCCAGTACCAGAAGAA TTCGAATCTACTACCCACCTACACGAGAGAGCAGCAGAAGGCTATGAATCACCTGCATACTATCCCACACCTCCA GGAGGCTGGATCTCCGACTGGAGTGAAGCCTACTCCAAGGCGCATATTCTCGTCAGTAATATGACGCTGGCCGAG AAAGTCAATCTGACTACAGGCACTGGCTTCTTCATGGGGCCCTGCGTAGGGCAGACAGGCAGCGTGCCTCGCCTG GGTGTGCCCAACTTGTGCCTCCAAGACAGCCCTCTGGGAGTCCGCAACTCGGACCACAATACTGCCTTCCCGCCT GGTATCACGGTTGGCGCGACCTTTAACAAAGAGCTCATGTATGAGAGAGGTGTTGGGCTCGGCGAGGAGGCTCGC GGTAAGGGAGTCAATGTGCTCCTCGGACCATCCGTGGGAGCACTGGGACGCAAGCCACGCGGTGGACGGAACTGG GAAGGCTTCGGTGCTGATCCTGTTCTGCAGGCTTTTGGAGGTGCCCAGACTATAAAGGGTATGCAGAGTACCGGT GCTATCGCGGCTATCAAGCATTACATTGGTAATGAGCAGGAAATGCATCGCATGGGAAGTGTTATTACCCAGGGC TATTCGTCTAATATTGATGATCGCACATTGCATGAACTGTACCTCTGGCCTTTTGCCGAGGGTGTTCGTGCGGGT GTTGGGTCCTTGATGACAGCTTATTCCGATGTGAGTCGCTTCAGTCCTTATTTTGTGTGTGTTGCTGACATCTGA TAGGTCAATAGCTCTTCGTGCTCTCAGAACAGCAAGTTGGTCAATGGGATTCTCAAGGATGAGCTTGGCTTCCAA GGATTTGTGATGACGGACTGGCTGGGTCATTACTCTGGCGTTGCGTCGGCCATAGCTGGTTTGGATATGTCCATG CCTGGCGATGGAGCAGTTCCTTTGTTCGGAGATTCATACTGGGGTCCTGAGCTGTCGCGTTCAGTTTTGAATGGC AGTGTTCCTGTCGACCGTCTCAACGATATGGTACGCGGTCCTCTATGTGAAATCTTTCATGTCTAATATACGGGT CTAGGTTCAACGTATCGTTGCTACTTGGTACAAACACGGACAGGATAAGGACTATCCCTTGCCAAACTTCTCGAC CAACACCCAGGATAAGGAGGGCTTGCTTTACCCCGGTGCTTTATTTTCTCCATCTGGTGTCGTTAACCAGTTTGT CGATGTGAGAGGAAATCACAACATCACCGTGAGAGCCGTCGCACGGGAAGCAATTACCTTGCTGAAGAACGATAT GGACATCCTTCCTCTGCGTAGCAATGATTCTCTCAAGGTATTCGGCACAGACGCAGGTGGAAATCCAGACGGTCT CAACTCATGCGCCGACCAAGGGTGCAACAAAGGCGTGCTGACCATGGGCTGGGGCAGTGGCACAGCCAGGCTACC CTATCTGATCACACCGCAAGAGGCAATCTCTAATATCACCAAGAATGCCGAGTTCCACATCACCGACAACTTCCC CTCAGACGTTACCGCCAATGCCAACGATATCGCTCTCGTCTTCATCAGTGCCGATTCAGGCGAAAACTATATCAC AGTCGAAGGGAACCCGGGAGATCGAACCGAAGCTGGACTCAAAGCTTGGCACGATGGCGACGATCTCGTCAAAGC AGCAGCAGAGAAGTTTTCCAATGTAGTCGTGATTGTTCACACCGTCGGTCCCATCCTGATGGAAGAGTGGATTGA ACTCAAGTCCGTGAAAGCAGTGATCGTGGCACATCTCCCTGGACAAGAAGCTGGCAACTCCCTTACCGATATCCT ATTTGGCGACTATAGTCCAAGCGGCCACATGCCATACACCATTCCTCGCAGCGAAGATAATTACCCGGATAGCGT GGGATTGATCAGTCAACCATTCGGCCAGATCCAAGATACCTATACCGAGGGGCTATACATCGACTACCGCCACTT CATTAAAGCCAATATCACACCTCGGTACGCATTCGGCCACGGTCTCTCTTACACCACCTTCAACTTTTCCCAGCC TTCGCTGTCAACAAAAACCCCGCTAGACTCAGCTTACCCAGCTCCACGACCCACAAAGCCGCCAACCCTGTCCTA CAACACCAGCATTCCGGACGCGTCAGAAGTCGCCTGGTCGTCTACCAGCTTCACCCGCATCTGGCGCTACCTTTA CCCCTACCTTTCCAACCCGCAGTCGATCACTGCCACGAATACATACCCCTACCCGGACGGCTACAGCACCGAGCC GCATGCAGTCCCCCGGGCCGGGGGTGGCGAGGGGGGGAATCCCGCTCTCTTCGAGACTGTATTTACGGTCCAGTT GGAGGTCCAGAATACGGGTAAGCGAACCGGTAAGGCGGTCGCCCAGCTGTATGTTGAGCTTCCGTCTAGTCTGGG ACTGGAGACGCCGGCCTTGCAGCTCCGGCAGTTTGAAAAGACAAGGGAGCTTGCGCCTGGTCAGAGTGAGACGGT TACGCTGGATATTACCCGGAAGGACGTTAGTGTTTGGGATGTTGTGGTGCAGGATTGGAAGGCTCCTGTCAATGG ACGCGGCATTAAGCTCTGGGTTGGGAATAGTGTTGCTGATCTGCCTGTTCTCTGTGTGGTCGGTGGACAGTGTTC GGCTCAATAA |