© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5706.t1 |
| Gene name | |
| Location | scaffold_14:201307..202736 |
| Strand | + |
| Gene length (bp) | 1429 |
| Transcript length (bp) | 1314 |
| Coding sequence length (bp) | 1314 |
| Protein length (aa) | 438 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12756 | zf-C2H2_2 | C2H2 type zinc-finger (2 copies) | 1.5E-03 | 15 | 110 |
| PF12756 | zf-C2H2_2 | C2H2 type zinc-finger (2 copies) | 1.6E-30 | 170 | 266 |
| PF12874 | zf-met | Zinc-finger of C2H2 type | 3.7E-06 | 79 | 102 |
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 6.8E-06 | 80 | 103 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| C2H2 zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 104.42 | 64.11 | 144.73 |
| 5d_25C | Five days - 25 degrees Celsius | 98.32 | 60.29 | 136.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 95.43 | 58.52 | 132.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 86.89 | 53.22 | 120.56 |
| 7d_15C | Seven days - 15 degrees Celsius | 128.24 | 78.76 | 177.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 84.29 | 51.35 | 117.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.844545 | no |
| 3d_25C | 7d_25C | 0.751048 | no |
| 3d_25C | 7d_15C | 0.384047 | no |
| 3d_25C | 7d_30C | 0.375411 | no |
| 3d_25C | 10d_25C | 0.456448 | no |
| 5d_25C | 7d_25C | 0.929003 | no |
| 5d_25C | 7d_15C | 0.231043 | no |
| 5d_25C | 7d_30C | 0.551071 | no |
| 5d_25C | 10d_25C | 0.644175 | no |
| 7d_25C | 7d_15C | 0.175287 | no |
| 7d_25C | 7d_30C | 0.654499 | no |
| 7d_25C | 10d_25C | 0.743463 | no |
| 7d_15C | 7d_30C | 0.044784 | yes |
| 7d_15C | 10d_25C | 0.061637 | no |
| 7d_30C | 10d_25C | 0.926425 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5706.t1 MSSTTQDAASLQYTCNTCLVAFQRSDVQRDHMRKDWHLYNMKRRIASLPPVTLETFNEKVLAAKATSNEAAAKAS YENTCHTCNKAFYSENSYKNHLNSSKHKQRAASLRKDGDAASVQSSAFSLGEPVTKSGDDVSKVTEDLKAATIDE EEDEDMESDIKKDEFLATRCLFCKTESSDIHTNVDHMRIEHGMFIPEQKYLSDLDGLVHYLYRKITENFECLYCH AMKNDAQAIQTHMRDKSHCMIAFESEEEQVEIGQYYDFRSTYSEDEDESTAGSGGVKVHGDGDEGWETDSSASSV DEDDLDSYRNASGAYEADYELHLPSGKSVGHRSLAKYYRQNLHKYPSAAERAARQLAIANGEIEEEPPRGRTNHH RSLITRANGGMGMIGVTDEQKEAALTAERRERTRALRQENRYVARVQKANNHQKHFRDPLLQ* |
| Coding | >Pro_DTO377G3_2|g5706.t1 ATGTCGTCGACCACCCAAGACGCAGCCTCGCTGCAATACACTTGCAACACCTGTCTCGTTGCCTTCCAACGCAGC GATGTTCAGAGAGATCACATGCGCAAAGACTGGCATTTATACAACATGAAGCGTCGCATCGCCTCTCTGCCACCT GTCACTCTCGAAACCTTCAACGAGAAAGTTCTGGCCGCCAAAGCTACATCCAATGAGGCCGCTGCCAAAGCTTCG TACGAAAATACATGCCACACTTGCAATAAGGCATTCTACAGCGAAAACTCGTACAAGAATCACTTGAACAGCTCG AAGCACAAGCAACGTGCGGCCAGCCTACGTAAGGATGGCGATGCTGCCTCCGTACAAAGTTCCGCTTTCTCTCTC GGCGAGCCCGTGACCAAATCGGGCGATGACGTCAGCAAGGTCACCGAGGACCTGAAGGCTGCCACCATTGACGAA GAAGAAGATGAGGATATGGAAAGTGATATCAAGAAGGACGAGTTCTTGGCGACTCGCTGTCTCTTCTGCAAAACT GAATCATCTGATATTCACACCAACGTGGACCACATGCGGATAGAGCACGGCATGTTTATCCCCGAACAAAAATAT TTGTCGGATCTCGATGGCCTCGTGCATTATCTCTACCGAAAAATCACCGAAAACTTCGAATGTCTTTACTGTCAC GCTATGAAGAATGACGCACAAGCCATCCAAACCCACATGCGCGACAAGAGCCACTGCATGATTGCCTTCGAGTCC GAAGAAGAACAAGTTGAAATCGGCCAATACTACGATTTCCGAAGCACCTACTCCGAAGATGAAGACGAATCCACT GCCGGGAGCGGTGGCGTCAAGGTGCACGGAGATGGAGATGAAGGCTGGGAAACCGACAGTTCTGCATCCTCCGTC GACGAGGACGATCTTGACTCATATCGAAACGCCTCAGGTGCCTACGAGGCAGACTACGAGCTCCACCTTCCATCT GGAAAGAGTGTCGGTCATCGTTCGCTTGCCAAATATTACCGACAAAACCTGCACAAATACCCCTCAGCCGCCGAA CGAGCTGCCCGCCAGCTTGCCATTGCGAATGGAGAAATCGAGGAGGAACCTCCCCGCGGCCGCACCAACCATCAC CGCTCTCTTATCACTCGTGCCAACGGTGGCATGGGCATGATTGGAGTTACCGACGAACAAAAAGAAGCTGCTCTT ACTGCCGAGCGCCGCGAGAGGACTCGTGCCCTTCGCCAAGAGAACCGCTACGTTGCCCGCGTTCAAAAAGCCAAC AATCACCAGAAGCACTTCAGGGACCCTCTTCTGCAATGA |
| Transcript | >Pro_DTO377G3_2|g5706.t1 ATGTCGTCGACCACCCAAGACGCAGCCTCGCTGCAATACACTTGCAACACCTGTCTCGTTGCCTTCCAACGCAGC GATGTTCAGAGAGATCACATGCGCAAAGACTGGCATTTATACAACATGAAGCGTCGCATCGCCTCTCTGCCACCT GTCACTCTCGAAACCTTCAACGAGAAAGTTCTGGCCGCCAAAGCTACATCCAATGAGGCCGCTGCCAAAGCTTCG TACGAAAATACATGCCACACTTGCAATAAGGCATTCTACAGCGAAAACTCGTACAAGAATCACTTGAACAGCTCG AAGCACAAGCAACGTGCGGCCAGCCTACGTAAGGATGGCGATGCTGCCTCCGTACAAAGTTCCGCTTTCTCTCTC GGCGAGCCCGTGACCAAATCGGGCGATGACGTCAGCAAGGTCACCGAGGACCTGAAGGCTGCCACCATTGACGAA GAAGAAGATGAGGATATGGAAAGTGATATCAAGAAGGACGAGTTCTTGGCGACTCGCTGTCTCTTCTGCAAAACT GAATCATCTGATATTCACACCAACGTGGACCACATGCGGATAGAGCACGGCATGTTTATCCCCGAACAAAAATAT TTGTCGGATCTCGATGGCCTCGTGCATTATCTCTACCGAAAAATCACCGAAAACTTCGAATGTCTTTACTGTCAC GCTATGAAGAATGACGCACAAGCCATCCAAACCCACATGCGCGACAAGAGCCACTGCATGATTGCCTTCGAGTCC GAAGAAGAACAAGTTGAAATCGGCCAATACTACGATTTCCGAAGCACCTACTCCGAAGATGAAGACGAATCCACT GCCGGGAGCGGTGGCGTCAAGGTGCACGGAGATGGAGATGAAGGCTGGGAAACCGACAGTTCTGCATCCTCCGTC GACGAGGACGATCTTGACTCATATCGAAACGCCTCAGGTGCCTACGAGGCAGACTACGAGCTCCACCTTCCATCT GGAAAGAGTGTCGGTCATCGTTCGCTTGCCAAATATTACCGACAAAACCTGCACAAATACCCCTCAGCCGCCGAA CGAGCTGCCCGCCAGCTTGCCATTGCGAATGGAGAAATCGAGGAGGAACCTCCCCGCGGCCGCACCAACCATCAC CGCTCTCTTATCACTCGTGCCAACGGTGGCATGGGCATGATTGGAGTTACCGACGAACAAAAAGAAGCTGCTCTT ACTGCCGAGCGCCGCGAGAGGACTCGTGCCCTTCGCCAAGAGAACCGCTACGTTGCCCGCGTTCAAAAAGCCAAC AATCACCAGAAGCACTTCAGGGACCCTCTTCTGCAATGA |
| Gene | >Pro_DTO377G3_2|g5706.t1 ATGTCGTCGACCACCCAAGACGCAGCCTCGCTGCAATACACTTGCAACACCTGTCTCGTTGCCTTCCAACGCAGC GATGTTCAGAGAGATCACATGCGCAAAGACTGGCAGTAAGTCTCTTTTCCGTCTTGATTTTTTTTTTTTTTGCGA CTTCAGAAGCTGATTTTCTATAGTTTATACAACATGAAGCGTCGCATCGCCTCTCTGCCACCTGTCACTCTCGAA ACCTTCAACGAGAAAGTTCTGGCCGCCAAAGCTACATCCAATGAGGCCGCTGCCAAAGCTTCGTACGAAAATACA TGCCACACTTGCAATAAGGCATTCTACAGCGAAAACTCGTACAAGAATCACTTGAACAGCTCGAAGCACAAGCAA CGTGCGGCCAGCCTACGTAAGGATGGCGATGCTGCCTCCGTACAAAGTTCCGCTTTCTCTCTCGGCGAGCCCGTG ACCAAATCGGGCGATGACGTCAGCAAGGTCACCGAGGACCTGAAGGCTGCCACCATTGACGAAGAAGAAGATGAG GATATGGAAAGTGATATCAAGAAGGACGAGTTCTTGGCGACTCGCTGTCTCTTCTGCAAAACTGAATCATCTGAT ATTCACACCAACGTGGACCACATGCGGATAGAGCACGGCATGTTTATCCCCGAACAAAAATATTTGTCGGATCTC GATGGCCTCGTGCATTATCTCTACCGAAAAATCACCGAAAACTTCGAATGTCTTTACTGTCACGCTATGAAGAAT GACGCACAAGCCATCCAAACCCACATGCGCGACAAGAGCCACTGCATGATTGCCTTCGAGTCCGAAGAAGAACAA GTTGAAATCGGCCAATACTACGATTTCCGAAGCACCTACTCCGAAGATGAAGACGAATCCACTGCCGGGAGCGGT GGCGTCAAGGTGCACGGAGATGGAGATGAAGGCTGGGAAACCGACAGTTCTGCATCCTCCGTCGACGAGGACGAT CTTGACTCATATCGAAACGCCTCAGGTGCCTACGAGGCAGACTACGAGCTCCACCTTCCATCTGGAAAGAGTGTC GGTCATCGTTCGCTTGCCAAATATTACCGACAAAACCTGCACAAATACCCCTCAGCCGCCGAACGAGCTGCCCGC CAGCTTGCCATTGCGAATGGAGAAATCGAGGAGGAACCTCCCCGCGGCCGCACCAACCATCACCGCTCTCTTATC ACTCGTGCCAACGGTGGCATGGGCATGATTGGAGTTACCGACGAACAAAAAGAAGCTGCTCTTACTGCCGAGCGC CGCGAGAGGACTCGTGCCCTTCGCCAAGAGAACCGCTACGTTGCCCGCGTTCAAAAAGCCAACAATCACCAGAAG CACTTCAGGGTATGTTCGACCTGTACTCTTTTTTTGTTTTGCAAAACTAACTTCCCACTAGGACCCTCTTCTGCA ATGA |