Protein ID | Pro_DTO377G3_2|g5706.t1 |
Gene name | |
Location | scaffold_14:201307..202736 |
Strand | + |
Gene length (bp) | 1429 |
Transcript length (bp) | 1314 |
Coding sequence length (bp) | 1314 |
Protein length (aa) | 438 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12756 | zf-C2H2_2 | C2H2 type zinc-finger (2 copies) | 1.5E-03 | 15 | 110 |
PF12756 | zf-C2H2_2 | C2H2 type zinc-finger (2 copies) | 1.6E-30 | 170 | 266 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 3.7E-06 | 79 | 102 |
PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 6.8E-06 | 80 | 103 |
Transcription Factor Class (based on PFAM domains) |
---|
C2H2 zinc finger |
Orthofinder run ID | 2 |
Orthogroup | 2952 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5706.t1 MSSTTQDAASLQYTCNTCLVAFQRSDVQRDHMRKDWHLYNMKRRIASLPPVTLETFNEKVLAAKATSNEAAAKAS YENTCHTCNKAFYSENSYKNHLNSSKHKQRAASLRKDGDAASVQSSAFSLGEPVTKSGDDVSKVTEDLKAATIDE EEDEDMESDIKKDEFLATRCLFCKTESSDIHTNVDHMRIEHGMFIPEQKYLSDLDGLVHYLYRKITENFECLYCH AMKNDAQAIQTHMRDKSHCMIAFESEEEQVEIGQYYDFRSTYSEDEDESTAGSGGVKVHGDGDEGWETDSSASSV DEDDLDSYRNASGAYEADYELHLPSGKSVGHRSLAKYYRQNLHKYPSAAERAARQLAIANGEIEEEPPRGRTNHH RSLITRANGGMGMIGVTDEQKEAALTAERRERTRALRQENRYVARVQKANNHQKHFRDPLLQ* |
Coding | >Pro_DTO377G3_2|g5706.t1 ATGTCGTCGACCACCCAAGACGCAGCCTCGCTGCAATACACTTGCAACACCTGTCTCGTTGCCTTCCAACGCAGC GATGTTCAGAGAGATCACATGCGCAAAGACTGGCATTTATACAACATGAAGCGTCGCATCGCCTCTCTGCCACCT GTCACTCTCGAAACCTTCAACGAGAAAGTTCTGGCCGCCAAAGCTACATCCAATGAGGCCGCTGCCAAAGCTTCG TACGAAAATACATGCCACACTTGCAATAAGGCATTCTACAGCGAAAACTCGTACAAGAATCACTTGAACAGCTCG AAGCACAAGCAACGTGCGGCCAGCCTACGTAAGGATGGCGATGCTGCCTCCGTACAAAGTTCCGCTTTCTCTCTC GGCGAGCCCGTGACCAAATCGGGCGATGACGTCAGCAAGGTCACCGAGGACCTGAAGGCTGCCACCATTGACGAA GAAGAAGATGAGGATATGGAAAGTGATATCAAGAAGGACGAGTTCTTGGCGACTCGCTGTCTCTTCTGCAAAACT GAATCATCTGATATTCACACCAACGTGGACCACATGCGGATAGAGCACGGCATGTTTATCCCCGAACAAAAATAT TTGTCGGATCTCGATGGCCTCGTGCATTATCTCTACCGAAAAATCACCGAAAACTTCGAATGTCTTTACTGTCAC GCTATGAAGAATGACGCACAAGCCATCCAAACCCACATGCGCGACAAGAGCCACTGCATGATTGCCTTCGAGTCC GAAGAAGAACAAGTTGAAATCGGCCAATACTACGATTTCCGAAGCACCTACTCCGAAGATGAAGACGAATCCACT GCCGGGAGCGGTGGCGTCAAGGTGCACGGAGATGGAGATGAAGGCTGGGAAACCGACAGTTCTGCATCCTCCGTC GACGAGGACGATCTTGACTCATATCGAAACGCCTCAGGTGCCTACGAGGCAGACTACGAGCTCCACCTTCCATCT GGAAAGAGTGTCGGTCATCGTTCGCTTGCCAAATATTACCGACAAAACCTGCACAAATACCCCTCAGCCGCCGAA CGAGCTGCCCGCCAGCTTGCCATTGCGAATGGAGAAATCGAGGAGGAACCTCCCCGCGGCCGCACCAACCATCAC CGCTCTCTTATCACTCGTGCCAACGGTGGCATGGGCATGATTGGAGTTACCGACGAACAAAAAGAAGCTGCTCTT ACTGCCGAGCGCCGCGAGAGGACTCGTGCCCTTCGCCAAGAGAACCGCTACGTTGCCCGCGTTCAAAAAGCCAAC AATCACCAGAAGCACTTCAGGGACCCTCTTCTGCAATGA |
Transcript | >Pro_DTO377G3_2|g5706.t1 ATGTCGTCGACCACCCAAGACGCAGCCTCGCTGCAATACACTTGCAACACCTGTCTCGTTGCCTTCCAACGCAGC GATGTTCAGAGAGATCACATGCGCAAAGACTGGCATTTATACAACATGAAGCGTCGCATCGCCTCTCTGCCACCT GTCACTCTCGAAACCTTCAACGAGAAAGTTCTGGCCGCCAAAGCTACATCCAATGAGGCCGCTGCCAAAGCTTCG TACGAAAATACATGCCACACTTGCAATAAGGCATTCTACAGCGAAAACTCGTACAAGAATCACTTGAACAGCTCG AAGCACAAGCAACGTGCGGCCAGCCTACGTAAGGATGGCGATGCTGCCTCCGTACAAAGTTCCGCTTTCTCTCTC GGCGAGCCCGTGACCAAATCGGGCGATGACGTCAGCAAGGTCACCGAGGACCTGAAGGCTGCCACCATTGACGAA GAAGAAGATGAGGATATGGAAAGTGATATCAAGAAGGACGAGTTCTTGGCGACTCGCTGTCTCTTCTGCAAAACT GAATCATCTGATATTCACACCAACGTGGACCACATGCGGATAGAGCACGGCATGTTTATCCCCGAACAAAAATAT TTGTCGGATCTCGATGGCCTCGTGCATTATCTCTACCGAAAAATCACCGAAAACTTCGAATGTCTTTACTGTCAC GCTATGAAGAATGACGCACAAGCCATCCAAACCCACATGCGCGACAAGAGCCACTGCATGATTGCCTTCGAGTCC GAAGAAGAACAAGTTGAAATCGGCCAATACTACGATTTCCGAAGCACCTACTCCGAAGATGAAGACGAATCCACT GCCGGGAGCGGTGGCGTCAAGGTGCACGGAGATGGAGATGAAGGCTGGGAAACCGACAGTTCTGCATCCTCCGTC GACGAGGACGATCTTGACTCATATCGAAACGCCTCAGGTGCCTACGAGGCAGACTACGAGCTCCACCTTCCATCT GGAAAGAGTGTCGGTCATCGTTCGCTTGCCAAATATTACCGACAAAACCTGCACAAATACCCCTCAGCCGCCGAA CGAGCTGCCCGCCAGCTTGCCATTGCGAATGGAGAAATCGAGGAGGAACCTCCCCGCGGCCGCACCAACCATCAC CGCTCTCTTATCACTCGTGCCAACGGTGGCATGGGCATGATTGGAGTTACCGACGAACAAAAAGAAGCTGCTCTT ACTGCCGAGCGCCGCGAGAGGACTCGTGCCCTTCGCCAAGAGAACCGCTACGTTGCCCGCGTTCAAAAAGCCAAC AATCACCAGAAGCACTTCAGGGACCCTCTTCTGCAATGA |
Gene | >Pro_DTO377G3_2|g5706.t1 ATGTCGTCGACCACCCAAGACGCAGCCTCGCTGCAATACACTTGCAACACCTGTCTCGTTGCCTTCCAACGCAGC GATGTTCAGAGAGATCACATGCGCAAAGACTGGCAGTAAGTCTCTTTTCCGTCTTGATTTTTTTTTTTTTTGCGA CTTCAGAAGCTGATTTTCTATAGTTTATACAACATGAAGCGTCGCATCGCCTCTCTGCCACCTGTCACTCTCGAA ACCTTCAACGAGAAAGTTCTGGCCGCCAAAGCTACATCCAATGAGGCCGCTGCCAAAGCTTCGTACGAAAATACA TGCCACACTTGCAATAAGGCATTCTACAGCGAAAACTCGTACAAGAATCACTTGAACAGCTCGAAGCACAAGCAA CGTGCGGCCAGCCTACGTAAGGATGGCGATGCTGCCTCCGTACAAAGTTCCGCTTTCTCTCTCGGCGAGCCCGTG ACCAAATCGGGCGATGACGTCAGCAAGGTCACCGAGGACCTGAAGGCTGCCACCATTGACGAAGAAGAAGATGAG GATATGGAAAGTGATATCAAGAAGGACGAGTTCTTGGCGACTCGCTGTCTCTTCTGCAAAACTGAATCATCTGAT ATTCACACCAACGTGGACCACATGCGGATAGAGCACGGCATGTTTATCCCCGAACAAAAATATTTGTCGGATCTC GATGGCCTCGTGCATTATCTCTACCGAAAAATCACCGAAAACTTCGAATGTCTTTACTGTCACGCTATGAAGAAT GACGCACAAGCCATCCAAACCCACATGCGCGACAAGAGCCACTGCATGATTGCCTTCGAGTCCGAAGAAGAACAA GTTGAAATCGGCCAATACTACGATTTCCGAAGCACCTACTCCGAAGATGAAGACGAATCCACTGCCGGGAGCGGT GGCGTCAAGGTGCACGGAGATGGAGATGAAGGCTGGGAAACCGACAGTTCTGCATCCTCCGTCGACGAGGACGAT CTTGACTCATATCGAAACGCCTCAGGTGCCTACGAGGCAGACTACGAGCTCCACCTTCCATCTGGAAAGAGTGTC GGTCATCGTTCGCTTGCCAAATATTACCGACAAAACCTGCACAAATACCCCTCAGCCGCCGAACGAGCTGCCCGC CAGCTTGCCATTGCGAATGGAGAAATCGAGGAGGAACCTCCCCGCGGCCGCACCAACCATCACCGCTCTCTTATC ACTCGTGCCAACGGTGGCATGGGCATGATTGGAGTTACCGACGAACAAAAAGAAGCTGCTCTTACTGCCGAGCGC CGCGAGAGGACTCGTGCCCTTCGCCAAGAGAACCGCTACGTTGCCCGCGTTCAAAAAGCCAACAATCACCAGAAG CACTTCAGGGTATGTTCGACCTGTACTCTTTTTTTGTTTTGCAAAACTAACTTCCCACTAGGACCCTCTTCTGCA ATGA |