© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5623.t1 |
| Gene name | |
| Location | scaffold_13:599512..600022 |
| Strand | + |
| Gene length (bp) | 510 |
| Transcript length (bp) | 510 |
| Coding sequence length (bp) | 510 |
| Protein length (aa) | 170 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999774 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
| 2 | 140 | 162 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 99.79 | 52.43 | 147.15 |
| 5d_25C | Five days - 25 degrees Celsius | 75.61 | 36.29 | 114.93 |
| 7d_25C | Seven days - 25 degrees Celsius | 71.67 | 33.56 | 109.79 |
| 10d_25C | Ten days - 25 degrees Celsius | 57.30 | 25.93 | 88.66 |
| 7d_15C | Seven days - 15 degrees Celsius | 69.06 | 32.94 | 105.17 |
| 7d_30C | Seven days - 30 degrees Celsius | 31.18 | 11.21 | 51.15 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.364890 | no |
| 3d_25C | 7d_25C | 0.270249 | no |
| 3d_25C | 7d_15C | 0.197494 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.039155 | yes |
| 5d_25C | 7d_25C | 0.906873 | no |
| 5d_25C | 7d_15C | 0.823457 | no |
| 5d_25C | 7d_30C | 0.004450 | yes |
| 5d_25C | 10d_25C | 0.404271 | no |
| 7d_25C | 7d_15C | 0.934875 | no |
| 7d_25C | 7d_30C | 0.007091 | yes |
| 7d_25C | 10d_25C | 0.527564 | no |
| 7d_15C | 7d_30C | 0.007091 | yes |
| 7d_15C | 10d_25C | 0.600505 | no |
| 7d_30C | 10d_25C | 0.064341 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 5681 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5623.t1 MARKLALLVILMHAIQILALPTPYENSIAFKSVLSGITQNNRHYFPETIPDQDELIVMLKETAMREAGFVLSSNP DPQSKEHKTETELHKSLPNPYAAIGTDATAKPQPNSYPKPRQSKSKSESRVKESFVVALGSYNYPIYWPPFGFFV IAAAVVCFCTILRGIRAKK* |
| Coding | >Pro_DTO377G3_2|g5623.t1 ATGGCCCGCAAACTGGCCCTGCTGGTCATATTAATGCACGCAATCCAAATCCTCGCTCTTCCTACTCCCTACGAA AACTCAATCGCATTCAAATCCGTTCTGTCTGGCATTACACAAAACAATCGCCACTACTTCCCAGAAACCATCCCC GATCAAGATGAGCTCATAGTCATGCTGAAGGAGACAGCCATGCGTGAAGCAGGCTTCGTGCTCTCGTCAAACCCG GACCCGCAATCAAAGGAGCATAAAACGGAGACGGAGCTTCACAAATCACTTCCGAATCCGTATGCAGCGATCGGC ACGGATGCAACGGCAAAACCACAACCGAATAGCTACCCAAAGCCGAGACAATCCAAGTCCAAGTCCGAGTCCCGT GTGAAGGAGTCTTTCGTGGTCGCATTAGGATCATACAATTACCCGATCTACTGGCCGCCATTTGGGTTCTTCGTT ATCGCGGCTGCGGTTGTGTGTTTCTGTACGATACTGCGGGGGATCCGCGCGAAGAAGTGA |
| Transcript | >Pro_DTO377G3_2|g5623.t1 ATGGCCCGCAAACTGGCCCTGCTGGTCATATTAATGCACGCAATCCAAATCCTCGCTCTTCCTACTCCCTACGAA AACTCAATCGCATTCAAATCCGTTCTGTCTGGCATTACACAAAACAATCGCCACTACTTCCCAGAAACCATCCCC GATCAAGATGAGCTCATAGTCATGCTGAAGGAGACAGCCATGCGTGAAGCAGGCTTCGTGCTCTCGTCAAACCCG GACCCGCAATCAAAGGAGCATAAAACGGAGACGGAGCTTCACAAATCACTTCCGAATCCGTATGCAGCGATCGGC ACGGATGCAACGGCAAAACCACAACCGAATAGCTACCCAAAGCCGAGACAATCCAAGTCCAAGTCCGAGTCCCGT GTGAAGGAGTCTTTCGTGGTCGCATTAGGATCATACAATTACCCGATCTACTGGCCGCCATTTGGGTTCTTCGTT ATCGCGGCTGCGGTTGTGTGTTTCTGTACGATACTGCGGGGGATCCGCGCGAAGAAGTGA |
| Gene | >Pro_DTO377G3_2|g5623.t1 ATGGCCCGCAAACTGGCCCTGCTGGTCATATTAATGCACGCAATCCAAATCCTCGCTCTTCCTACTCCCTACGAA AACTCAATCGCATTCAAATCCGTTCTGTCTGGCATTACACAAAACAATCGCCACTACTTCCCAGAAACCATCCCC GATCAAGATGAGCTCATAGTCATGCTGAAGGAGACAGCCATGCGTGAAGCAGGCTTCGTGCTCTCGTCAAACCCG GACCCGCAATCAAAGGAGCATAAAACGGAGACGGAGCTTCACAAATCACTTCCGAATCCGTATGCAGCGATCGGC ACGGATGCAACGGCAAAACCACAACCGAATAGCTACCCAAAGCCGAGACAATCCAAGTCCAAGTCCGAGTCCCGT GTGAAGGAGTCTTTCGTGGTCGCATTAGGATCATACAATTACCCGATCTACTGGCCGCCATTTGGGTTCTTCGTT ATCGCGGCTGCGGTTGTGTGTTTCTGTACGATACTGCGGGGGATCCGCGCGAAGAAGTGA |