© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5600.t1 |
| Gene name | |
| Location | scaffold_13:541385..543125 |
| Strand | + |
| Gene length (bp) | 1740 |
| Transcript length (bp) | 1740 |
| Coding sequence length (bp) | 1740 |
| Protein length (aa) | 580 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07519 | Tannase | Tannase and feruloyl esterase | 6.5E-148 | 70 | 562 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.80 | 2.44 | 11.16 |
| 5d_25C | Five days - 25 degrees Celsius | 1.83 | 0.33 | 3.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.11 | 0.00 | 2.28 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.76 | 0.00 | 1.56 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.36 | 0.00 | 0.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.51 | 0.07 | 2.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.001278 | yes |
| 3d_25C | 7d_30C | 0.001804 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.392353 | no |
| 5d_25C | 7d_15C | 0.019886 | yes |
| 5d_25C | 7d_30C | 0.771661 | no |
| 5d_25C | 10d_25C | 0.106051 | no |
| 7d_25C | 7d_15C | 0.116163 | no |
| 7d_25C | 7d_30C | 0.665570 | no |
| 7d_25C | 10d_25C | 0.599425 | no |
| 7d_15C | 7d_30C | 0.040599 | yes |
| 7d_15C | 10d_25C | 0.320263 | no |
| 7d_30C | 10d_25C | 0.254454 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5600.t1 MRVSLGAAAALAASAGATSLADVCTVSNVQAALPSNGTLVGISMIPSAVTASAVYNATAGTGSTETYTYCNVTVT YEHTGKGDSVVIKYAFPKPSDFKKRFYVAGGGGFSLSSDATGGLEYGAVSGATSAGYDAFNYAYDDIVLYGNGSI NWDATYMFGYQALGEMTKIGKVLTQGFYGMSSSAKVYTYYEGCSDGGREGMSQVQRYGEEYDGAITGAPAFRFAQ QQVHHVFPATAEQTLDYYPPPCELAKIVNATITACDPLDGRTDGVISRTDLCKLKFNLTSIIGEEYYCAAETSTS LGFGFSKRADGTSTSTTPEQSGNVTAEGVKVAQAVYDGLHNSQGERAYLSWQIGSELSDADTQWNNESSKWEIDI PSTGGEYVTKFIQLLDLDNLSDLDNVTYDTLVEWMNIGMVRYLDSLQTTLPDLTPFQASGGKLLHYHGESDPSIP AASSVHYWQSVRAIMYPNLSSQESLKELADWYQFYLIPGAAHCGTNSLQPGPYPENNMQTMIDWVENGVKPSRLN ATVSSGTYEGETQMLCQWPTRPLWKSNSTFKCVDDTASIESWTYSFPAFKLPVY* |
| Coding | >Pro_DTO377G3_2|g5600.t1 ATGCGCGTCTCCTTGGGCGCTGCTGCAGCCCTGGCAGCATCAGCAGGTGCTACTTCCCTTGCTGATGTCTGTACC GTCTCGAATGTGCAGGCTGCCCTGCCCTCCAACGGGACTCTAGTGGGTATCAGCATGATCCCCTCTGCTGTGACG GCCAGTGCTGTCTACAATGCCACCGCTGGCACGGGAAGCACCGAGACTTATACCTACTGCAATGTGACCGTCACC TACGAGCACACCGGCAAGGGAGACTCCGTTGTCATCAAGTATGCCTTCCCCAAGCCCTCCGATTTCAAGAAGCGC TTCTACGTCGCCGGCGGCGGTGGCTTCTCTCTGTCCAGCGATGCAACCGGTGGTCTCGAGTACGGTGCTGTCAGC GGTGCCACCAGCGCAGGCTATGATGCCTTCAACTACGCCTACGACGACATCGTCCTCTACGGCAACGGGAGCATC AACTGGGACGCAACCTACATGTTCGGATACCAAGCCTTGGGCGAAATGACCAAGATCGGAAAGGTCCTGACCCAG GGCTTCTATGGCATGTCTTCCTCCGCCAAGGTCTACACCTACTACGAAGGCTGCTCCGACGGCGGCCGCGAGGGC ATGAGCCAAGTCCAGCGCTACGGAGAGGAATACGACGGAGCCATCACCGGAGCCCCGGCCTTCCGTTTCGCCCAG CAGCAAGTCCACCACGTCTTCCCCGCTACAGCCGAGCAAACCCTCGACTACTACCCTCCTCCCTGCGAGCTGGCG AAGATAGTCAACGCCACAATCACCGCCTGCGATCCCCTCGACGGCCGCACCGACGGCGTCATCTCCCGCACCGAC CTCTGCAAGCTCAAATTCAACCTGACCTCCATCATCGGCGAGGAATACTACTGCGCCGCCGAAACCAGCACCTCC CTAGGCTTCGGCTTCAGCAAGCGCGCCGACGGCACCAGCACCTCCACCACCCCCGAACAAAGCGGCAACGTCACC GCCGAGGGCGTGAAAGTCGCACAAGCCGTCTACGACGGCCTGCACAACTCCCAAGGCGAGCGCGCCTACCTATCC TGGCAAATCGGCTCCGAGCTCAGCGACGCCGACACGCAATGGAACAACGAATCCAGCAAGTGGGAGATCGACATC CCCTCGACAGGCGGCGAGTACGTGACCAAGTTCATCCAGCTCCTCGACCTCGACAACCTCTCGGACCTCGACAAC GTCACCTACGACACCCTCGTCGAGTGGATGAACATCGGCATGGTCCGCTACCTGGACAGTCTGCAAACCACCCTA CCGGATCTCACGCCGTTCCAAGCCTCCGGCGGAAAACTGCTGCACTACCACGGCGAATCGGACCCCAGTATCCCT GCTGCGTCGTCTGTGCATTACTGGCAGTCGGTGCGCGCGATCATGTACCCGAATCTGTCGTCCCAGGAGAGTCTG AAGGAACTCGCCGATTGGTACCAATTCTACCTTATCCCTGGTGCGGCGCACTGCGGTACGAATTCTCTCCAGCCG GGTCCGTACCCGGAGAATAATATGCAGACTATGATCGACTGGGTGGAGAATGGTGTTAAGCCTTCGCGGTTGAAT GCCACTGTTTCGTCGGGTACTTATGAGGGCGAGACGCAGATGCTTTGCCAGTGGCCGACCCGTCCGCTTTGGAAG AGTAATAGCACTTTCAAGTGTGTTGATGATACGGCTTCGATTGAGAGCTGGACTTATTCTTTCCCGGCTTTCAAG CTGCCTGTGTACTAG |
| Transcript | >Pro_DTO377G3_2|g5600.t1 ATGCGCGTCTCCTTGGGCGCTGCTGCAGCCCTGGCAGCATCAGCAGGTGCTACTTCCCTTGCTGATGTCTGTACC GTCTCGAATGTGCAGGCTGCCCTGCCCTCCAACGGGACTCTAGTGGGTATCAGCATGATCCCCTCTGCTGTGACG GCCAGTGCTGTCTACAATGCCACCGCTGGCACGGGAAGCACCGAGACTTATACCTACTGCAATGTGACCGTCACC TACGAGCACACCGGCAAGGGAGACTCCGTTGTCATCAAGTATGCCTTCCCCAAGCCCTCCGATTTCAAGAAGCGC TTCTACGTCGCCGGCGGCGGTGGCTTCTCTCTGTCCAGCGATGCAACCGGTGGTCTCGAGTACGGTGCTGTCAGC GGTGCCACCAGCGCAGGCTATGATGCCTTCAACTACGCCTACGACGACATCGTCCTCTACGGCAACGGGAGCATC AACTGGGACGCAACCTACATGTTCGGATACCAAGCCTTGGGCGAAATGACCAAGATCGGAAAGGTCCTGACCCAG GGCTTCTATGGCATGTCTTCCTCCGCCAAGGTCTACACCTACTACGAAGGCTGCTCCGACGGCGGCCGCGAGGGC ATGAGCCAAGTCCAGCGCTACGGAGAGGAATACGACGGAGCCATCACCGGAGCCCCGGCCTTCCGTTTCGCCCAG CAGCAAGTCCACCACGTCTTCCCCGCTACAGCCGAGCAAACCCTCGACTACTACCCTCCTCCCTGCGAGCTGGCG AAGATAGTCAACGCCACAATCACCGCCTGCGATCCCCTCGACGGCCGCACCGACGGCGTCATCTCCCGCACCGAC CTCTGCAAGCTCAAATTCAACCTGACCTCCATCATCGGCGAGGAATACTACTGCGCCGCCGAAACCAGCACCTCC CTAGGCTTCGGCTTCAGCAAGCGCGCCGACGGCACCAGCACCTCCACCACCCCCGAACAAAGCGGCAACGTCACC GCCGAGGGCGTGAAAGTCGCACAAGCCGTCTACGACGGCCTGCACAACTCCCAAGGCGAGCGCGCCTACCTATCC TGGCAAATCGGCTCCGAGCTCAGCGACGCCGACACGCAATGGAACAACGAATCCAGCAAGTGGGAGATCGACATC CCCTCGACAGGCGGCGAGTACGTGACCAAGTTCATCCAGCTCCTCGACCTCGACAACCTCTCGGACCTCGACAAC GTCACCTACGACACCCTCGTCGAGTGGATGAACATCGGCATGGTCCGCTACCTGGACAGTCTGCAAACCACCCTA CCGGATCTCACGCCGTTCCAAGCCTCCGGCGGAAAACTGCTGCACTACCACGGCGAATCGGACCCCAGTATCCCT GCTGCGTCGTCTGTGCATTACTGGCAGTCGGTGCGCGCGATCATGTACCCGAATCTGTCGTCCCAGGAGAGTCTG AAGGAACTCGCCGATTGGTACCAATTCTACCTTATCCCTGGTGCGGCGCACTGCGGTACGAATTCTCTCCAGCCG GGTCCGTACCCGGAGAATAATATGCAGACTATGATCGACTGGGTGGAGAATGGTGTTAAGCCTTCGCGGTTGAAT GCCACTGTTTCGTCGGGTACTTATGAGGGCGAGACGCAGATGCTTTGCCAGTGGCCGACCCGTCCGCTTTGGAAG AGTAATAGCACTTTCAAGTGTGTTGATGATACGGCTTCGATTGAGAGCTGGACTTATTCTTTCCCGGCTTTCAAG CTGCCTGTGTACTAG |
| Gene | >Pro_DTO377G3_2|g5600.t1 ATGCGCGTCTCCTTGGGCGCTGCTGCAGCCCTGGCAGCATCAGCAGGTGCTACTTCCCTTGCTGATGTCTGTACC GTCTCGAATGTGCAGGCTGCCCTGCCCTCCAACGGGACTCTAGTGGGTATCAGCATGATCCCCTCTGCTGTGACG GCCAGTGCTGTCTACAATGCCACCGCTGGCACGGGAAGCACCGAGACTTATACCTACTGCAATGTGACCGTCACC TACGAGCACACCGGCAAGGGAGACTCCGTTGTCATCAAGTATGCCTTCCCCAAGCCCTCCGATTTCAAGAAGCGC TTCTACGTCGCCGGCGGCGGTGGCTTCTCTCTGTCCAGCGATGCAACCGGTGGTCTCGAGTACGGTGCTGTCAGC GGTGCCACCAGCGCAGGCTATGATGCCTTCAACTACGCCTACGACGACATCGTCCTCTACGGCAACGGGAGCATC AACTGGGACGCAACCTACATGTTCGGATACCAAGCCTTGGGCGAAATGACCAAGATCGGAAAGGTCCTGACCCAG GGCTTCTATGGCATGTCTTCCTCCGCCAAGGTCTACACCTACTACGAAGGCTGCTCCGACGGCGGCCGCGAGGGC ATGAGCCAAGTCCAGCGCTACGGAGAGGAATACGACGGAGCCATCACCGGAGCCCCGGCCTTCCGTTTCGCCCAG CAGCAAGTCCACCACGTCTTCCCCGCTACAGCCGAGCAAACCCTCGACTACTACCCTCCTCCCTGCGAGCTGGCG AAGATAGTCAACGCCACAATCACCGCCTGCGATCCCCTCGACGGCCGCACCGACGGCGTCATCTCCCGCACCGAC CTCTGCAAGCTCAAATTCAACCTGACCTCCATCATCGGCGAGGAATACTACTGCGCCGCCGAAACCAGCACCTCC CTAGGCTTCGGCTTCAGCAAGCGCGCCGACGGCACCAGCACCTCCACCACCCCCGAACAAAGCGGCAACGTCACC GCCGAGGGCGTGAAAGTCGCACAAGCCGTCTACGACGGCCTGCACAACTCCCAAGGCGAGCGCGCCTACCTATCC TGGCAAATCGGCTCCGAGCTCAGCGACGCCGACACGCAATGGAACAACGAATCCAGCAAGTGGGAGATCGACATC CCCTCGACAGGCGGCGAGTACGTGACCAAGTTCATCCAGCTCCTCGACCTCGACAACCTCTCGGACCTCGACAAC GTCACCTACGACACCCTCGTCGAGTGGATGAACATCGGCATGGTCCGCTACCTGGACAGTCTGCAAACCACCCTA CCGGATCTCACGCCGTTCCAAGCCTCCGGCGGAAAACTGCTGCACTACCACGGCGAATCGGACCCCAGTATCCCT GCTGCGTCGTCTGTGCATTACTGGCAGTCGGTGCGCGCGATCATGTACCCGAATCTGTCGTCCCAGGAGAGTCTG AAGGAACTCGCCGATTGGTACCAATTCTACCTTATCCCTGGTGCGGCGCACTGCGGTACGAATTCTCTCCAGCCG GGTCCGTACCCGGAGAATAATATGCAGACTATGATCGACTGGGTGGAGAATGGTGTTAAGCCTTCGCGGTTGAAT GCCACTGTTTCGTCGGGTACTTATGAGGGCGAGACGCAGATGCTTTGCCAGTGGCCGACCCGTCCGCTTTGGAAG AGTAATAGCACTTTCAAGTGTGTTGATGATACGGCTTCGATTGAGAGCTGGACTTATTCTTTCCCGGCTTTCAAG CTGCCTGTGTACTAG |