© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g560.t1 |
| Gene name | |
| Location | scaffold_01:1442634..1443440 |
| Strand | + |
| Gene length (bp) | 806 |
| Transcript length (bp) | 609 |
| Coding sequence length (bp) | 609 |
| Protein length (aa) | 203 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 45 | 67 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 68.73 | 35.92 | 101.53 |
| 5d_25C | Five days - 25 degrees Celsius | 55.78 | 27.72 | 83.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 57.50 | 28.84 | 86.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 48.95 | 23.60 | 74.31 |
| 7d_15C | Seven days - 15 degrees Celsius | 46.74 | 22.19 | 71.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 48.88 | 23.47 | 74.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.510549 | no |
| 3d_25C | 7d_25C | 0.589653 | no |
| 3d_25C | 7d_15C | 0.171107 | no |
| 3d_25C | 7d_30C | 0.241530 | no |
| 3d_25C | 10d_25C | 0.237804 | no |
| 5d_25C | 7d_25C | 0.943872 | no |
| 5d_25C | 7d_15C | 0.609307 | no |
| 5d_25C | 7d_30C | 0.721933 | no |
| 5d_25C | 10d_25C | 0.722947 | no |
| 7d_25C | 7d_15C | 0.539536 | no |
| 7d_25C | 7d_30C | 0.650338 | no |
| 7d_25C | 10d_25C | 0.651841 | no |
| 7d_15C | 7d_30C | 0.921874 | no |
| 7d_15C | 10d_25C | 0.916523 | no |
| 7d_30C | 10d_25C | 0.996846 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g560.t1 MGDQIKDMQDFQSNALMSAAKVGALSGTAGLIYGAAAGVVRSPNPMIHSLSCGIHWFACGSAFWWLRSNIIKHHY QDKASLQERTYTSALCGGIAGGSVTKLMGGRLVPGAIIFSLLGYCGQSVFNRVDAWQMENAHKTSKPLMQRMAES KWIPLRTLSDQEYRGMLREKLLSVEAEIALLDDKIQELEQSRPVSAPSPKQP* |
| Coding | >Pro_DTO377G3_2|g560.t1 ATGGGTGACCAAATCAAAGATATGCAGGATTTTCAGTCCAACGCTCTCATGTCTGCAGCCAAGGTCGGAGCCCTC AGCGGAACCGCTGGCCTGATCTATGGAGCAGCCGCTGGAGTTGTCAGATCCCCTAATCCCATGATTCATTCATTG TCATGTGGCATCCACTGGTTTGCGTGCGGCTCAGCCTTTTGGTGGCTACGGAGCAACATCATTAAACATCACTAC CAAGATAAAGCGTCGCTTCAGGAGCGCACGTACACGAGTGCTTTATGCGGTGGCATTGCCGGCGGAAGTGTAACG AAGTTGATGGGAGGCCGGCTGGTTCCGGGGGCTATCATTTTCTCATTACTCGGGTACTGCGGCCAGAGCGTCTTC AACCGAGTAGACGCGTGGCAAATGGAAAATGCACACAAGACATCGAAACCTTTGATGCAGCGAATGGCGGAATCT AAATGGATTCCACTCCGCACACTCTCTGACCAAGAATACAGGGGGATGTTGAGGGAAAAGCTCCTTAGCGTCGAG GCTGAGATTGCTCTTCTTGACGATAAAATCCAGGAACTGGAGCAGTCTCGACCGGTCTCTGCTCCAAGCCCCAAG CAACCCTGA |
| Transcript | >Pro_DTO377G3_2|g560.t1 ATGGGTGACCAAATCAAAGATATGCAGGATTTTCAGTCCAACGCTCTCATGTCTGCAGCCAAGGTCGGAGCCCTC AGCGGAACCGCTGGCCTGATCTATGGAGCAGCCGCTGGAGTTGTCAGATCCCCTAATCCCATGATTCATTCATTG TCATGTGGCATCCACTGGTTTGCGTGCGGCTCAGCCTTTTGGTGGCTACGGAGCAACATCATTAAACATCACTAC CAAGATAAAGCGTCGCTTCAGGAGCGCACGTACACGAGTGCTTTATGCGGTGGCATTGCCGGCGGAAGTGTAACG AAGTTGATGGGAGGCCGGCTGGTTCCGGGGGCTATCATTTTCTCATTACTCGGGTACTGCGGCCAGAGCGTCTTC AACCGAGTAGACGCGTGGCAAATGGAAAATGCACACAAGACATCGAAACCTTTGATGCAGCGAATGGCGGAATCT AAATGGATTCCACTCCGCACACTCTCTGACCAAGAATACAGGGGGATGTTGAGGGAAAAGCTCCTTAGCGTCGAG GCTGAGATTGCTCTTCTTGACGATAAAATCCAGGAACTGGAGCAGTCTCGACCGGTCTCTGCTCCAAGCCCCAAG CAACCCTGA |
| Gene | >Pro_DTO377G3_2|g560.t1 ATGGGTGACCAAATCAAAGATATGCAGGATTTTCAGTCCAACGCTCTCATGTCTGCAGCCAAGGTCGGAGCCCTC AGCGGTTAGTATCTGCCCTTCGTAAGATTGTTTGGATACAGACACAACGGGGTTTTCAAAGATGAAGTGCTGATT TTCCAACCAGGAACCGCTGGCCTGATCTATGGAGCAGCCGCTGGAGTTGTCAGATCCCCTAATCCCATGATTCAT TCATTGTCATGTGGCATCCACTGGTTTGCGTGCGGCTCAGCCTTTTGGTGTATGTGGGGACACTCTATGTTTATA TCGCTGATGTCTAACCTTAATCTTGGGACAGGGCTACGGAGCAACATCATTAAACATCACTACCAAGATAAAGCG TCGCTTCAGGAGCGCACGTACACGAGTGCTTTATGCGGTGGCATTGCCGGCGGAAGTGTAACGAAGTTGATGGGT ACCGTATCCCGCACTAAAAGCACATATTCTGGCATCACGTCTAACTAAATCATACAGGAGGCCGGCTGGTTCCGG GGGCTATCATTTTCTCATTACTCGGGTACTGCGGCCAGAGCGTCTTCAACCGAGTAGACGCGTGGCAAATGGAAA ATGCACACAAGACATCGAAACCTTTGATGCAGCGAATGGCGGAATCTAAATGGATTCCACTCCGCACACTCTCTG ACCAAGAATACAGGGGGATGTTGAGGGAAAAGCTCCTTAGCGTCGAGGCTGAGATTGCTCTTCTTGACGATAAAA TCCAGGAACTGGAGCAGTCTCGACCGGTCTCTGCTCCAAGCCCCAAGCAACCCTGA |